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Search of human proteins with 209870086
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209870086 F-box protein 28 isoform b [Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209870086 F-box protein 28 isoform b [Homo sapiens] 362 e-101
gi|7662158 F-box protein 28 isoform a [Homo sapiens] 349 8e-97
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 38 0.004
gi|28269693 xylosyltransferase I [Homo sapiens] 38 0.004
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 38 0.005
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 37 0.007
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 37 0.012
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 37 0.012
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 37 0.012
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] 37 0.012
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 36 0.015
gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo ... 36 0.020
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 36 0.020
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 35 0.026
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 35 0.026
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 35 0.026
gi|62955044 F-box protein 42 [Homo sapiens] 35 0.026
gi|4557853 transcription factor SOX9 [Homo sapiens] 35 0.034
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 35 0.034
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 35 0.034
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 35 0.034
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 35 0.034
gi|90903231 huntingtin [Homo sapiens] 35 0.034
gi|188536004 zinc finger protein 469 [Homo sapiens] 35 0.034
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 35 0.034
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 35 0.034
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 35 0.034
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 35 0.045
gi|52485606 formin-like 2 [Homo sapiens] 35 0.045
>gi|209870086 F-box protein 28 isoform b [Homo sapiens]
Length = 179
Score = 362 bits (929), Expect = e-101
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ 60
MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
Sbjct: 1 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ 60
Query: 61 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV 120
NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
Sbjct: 61 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV 120
Query: 121 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKFQDRLQP 179
KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKFQDRLQP
Sbjct: 121 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKFQDRLQP 179
>gi|7662158 F-box protein 28 isoform a [Homo sapiens]
Length = 368
Score = 349 bits (895), Expect = 8e-97
Identities = 173/177 (97%), Positives = 174/177 (98%)
Query: 1 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ 60
MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
Sbjct: 1 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ 60
Query: 61 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV 120
NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
Sbjct: 61 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV 120
Query: 121 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKFQDRL 177
KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGK D +
Sbjct: 121 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEI 177
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 38.1 bits (87), Expect = 0.004
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 31/137 (22%)
Query: 2 AAAAEERMAEEGGGGQGDGGSSLASGS------TQRQPPP--------PAPQHPQPGSQA 47
AA++EE AEE GGG+ G GS +Q Q P P+ + P S
Sbjct: 835 AASSEEAKAEETGGGKEKGSGGSGGGSQPRAERSQLQGPSSSEYWKEWPSAESPYSQSSE 894
Query: 48 LPAPALAPDQLPQNNTLVALPIVAIE---------------NILSFMSYDEISQLRLVCK 92
L + + PQN+ L + PIV + + + D I R V +
Sbjct: 895 LSLTGASRSETPQNSPLPSSPIVPMSKPTKPSVPPLTPEQYEVYMYQEVDTIELTRQVKE 954
Query: 93 RM--DLVCQRMLNQGFL 107
++ + +CQR+ + L
Sbjct: 955 KLAKNGICQRIFGEKVL 971
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 38.1 bits (87), Expect = 0.004
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 5 AEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQ-ALPAPALAPDQLP 59
AE A GGGG G GG + R P P+ QP S+ ALPA AL P P
Sbjct: 72 AEPAAARGGGGGGGGGGGGRGPQARARGGGPGEPRGQQPASRGALPARALDPHPSP 127
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 12 EGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPA 52
+ G G+ GG+++ G ++ PP PAP+ + A PA A
Sbjct: 39 DSGAGERRGGAAVGGG--EQPPPAPAPRRERRDLPAEPAAA 77
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 37.7 bits (86), Expect = 0.005
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 1 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPA---PQHPQPGSQALPAPALAPDQ 57
+A + R A E GG+ GG++L + R+PPPP P PQPG + +P P
Sbjct: 77 LAVGSAARRASERAGGRA-GGTALRA----REPPPPLLPPPSPPQPGPKGPASPRPLPSP 131
Query: 58 LP 59
LP
Sbjct: 132 LP 133
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 37.7 bits (86), Expect = 0.005
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 2 AAAAEERMAEEGGGGQGDGGSSLASG----------STQRQPPPPAPQHPQPGSQALPAP 51
A +R GG G G GG+ G +T+ PPPP P P S A+
Sbjct: 18 AERRSKRRRRSGGDGGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERK 77
Query: 52 ALAPDQLPQNNTLVALP 68
+L P + P + L P
Sbjct: 78 SLDPSEEPVDEVLQIPP 94
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 37.4 bits (85), Expect = 0.007
Identities = 24/52 (46%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 9 MAEEGG-GGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLP 59
M+ EGG GG G+ QPPPP P P PG A P PA AP LP
Sbjct: 1 MSFEGGHGGSRCRGAESGDAEPPPQPPPPPPPTPPPGEPA-PVPA-APRYLP 50
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 36.6 bits (83), Expect = 0.012
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 13 GGGGQGDGGSSLASG------STQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ 60
GG G G GG G Q+QP P APQ PQ Q P P+ P Q
Sbjct: 903 GGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQ 956
Score = 29.6 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 28 STQRQPPPPAPQHPQPGSQALPAPALAPDQLPQNNTLVAL 67
+ + PPPP +P +QA P A QLP ++ A+
Sbjct: 150 NNEGSPPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAV 189
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 36.6 bits (83), Expect = 0.012
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 13 GGGGQGDGGSSLASG------STQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ 60
GG G G GG G Q+QP P APQ PQ Q P P+ P Q
Sbjct: 910 GGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQ 963
Score = 29.6 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 28 STQRQPPPPAPQHPQPGSQALPAPALAPDQLPQNNTLVAL 67
+ + PPPP +P +QA P A QLP ++ A+
Sbjct: 135 NNEGSPPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAV 174
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 36.6 bits (83), Expect = 0.012
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 13 GGGGQGDGGSSLASG------STQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ 60
GG G G GG G Q+QP P APQ PQ Q P P+ P Q
Sbjct: 925 GGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQ 978
Score = 29.6 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 28 STQRQPPPPAPQHPQPGSQALPAPALAPDQLPQNNTLVAL 67
+ + PPPP +P +QA P A QLP ++ A+
Sbjct: 150 NNEGSPPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAV 189
>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
Length = 340
Score = 36.6 bits (83), Expect = 0.012
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 19 DGGSSLASGSTQRQPPPPAPQ-HPQPGSQALPAPALAPD 56
D GS L S + P PAPQ P+P SQ P PAL P+
Sbjct: 121 DQGSRLESAAPPEPAPEPAPQPDPRPDSQPTPKPALQPE 159
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 36.2 bits (82), Expect = 0.015
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 11 EEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLP 59
EEG G G + A G +P PP P+ G+ APA+AP LP
Sbjct: 79 EEGAAGDGAAAAGGADGGAAPEPVPP--DGPEAGAPPTLAPAVAPGSLP 125
Score = 33.9 bits (76), Expect = 0.077
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 12 EGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPD 56
+GGGG G GG + + P P P P+ +A PAP P+
Sbjct: 9 DGGGGGGGGGGGVGAAGEDPGPGPAPP--PEGAQEAAPAPRPPPE 51
Score = 29.3 bits (64), Expect = 1.9
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 13 GGGGQGDGGSSLASGSTQRQPPP-------PAPQHPQPGSQALPAPALAPDQL 58
GGGG G G++ PPP PAP+ P A A LA DQL
Sbjct: 14 GGGGGGGVGAAGEDPGPGPAPPPEGAQEAAPAPRPPPEPDDAAAALRLALDQL 66
>gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo
sapiens]
Length = 963
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 9 MAEEGG-----GGQGDGGSSLASGSTQR-QPPPPAPQHPQPGSQALPAPALAPDQLPQNN 62
MAE GG GG G G SG Q Q PPP Q QP Q P P LA ++
Sbjct: 1 MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQPPPQQQQQQPPQQPTP-PKLAQATSSSSS 59
Query: 63 TLVA 66
T A
Sbjct: 60 TSAA 63
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 35.8 bits (81), Expect = 0.020
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 2 AAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQL 58
AA A +A G G GG S SG+ PPPPAP P S P P P L
Sbjct: 121 AARAAALVAHPGAGSYPCGGGS--SGAQPSAPPPPAPPLPPTPSPPPPPPPPPPPAL 175
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 35.4 bits (80), Expect = 0.026
Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 30 QRQPPPPAPQHPQ-PGSQALPAPALAPDQ 57
Q+QPPPP PQ PQ P Q PAP P Q
Sbjct: 1648 QQQPPPPPPQQPQPPPPQPQPAPQPPPPQ 1676
Score = 30.4 bits (67), Expect = 0.85
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 30 QRQPPPPAPQ-HPQPGSQALPAPALAPDQLPQ 60
Q QPPPP PQ PQP P P P Q PQ
Sbjct: 1658 QPQPPPPQPQPAPQP-----PPPQQQPQQQPQ 1684
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 35.4 bits (80), Expect = 0.026
Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 30 QRQPPPPAPQHPQ-PGSQALPAPALAPDQ 57
Q+QPPPP PQ PQ P Q PAP P Q
Sbjct: 1648 QQQPPPPPPQQPQPPPPQPQPAPQPPPPQ 1676
Score = 30.4 bits (67), Expect = 0.85
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 30 QRQPPPPAPQ-HPQPGSQALPAPALAPDQLPQ 60
Q QPPPP PQ PQP P P P Q PQ
Sbjct: 1658 QPQPPPPQPQPAPQP-----PPPQQQPQQQPQ 1684
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 35.4 bits (80), Expect = 0.026
Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 30 QRQPPPPAPQHPQ-PGSQALPAPALAPDQ 57
Q+QPPPP PQ PQ P Q PAP P Q
Sbjct: 1648 QQQPPPPPPQQPQPPPPQPQPAPQPPPPQ 1676
Score = 30.4 bits (67), Expect = 0.85
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 30 QRQPPPPAPQ-HPQPGSQALPAPALAPDQLPQ 60
Q QPPPP PQ PQP P P P Q PQ
Sbjct: 1658 QPQPPPPQPQPAPQP-----PPPQQQPQQQPQ 1684
>gi|62955044 F-box protein 42 [Homo sapiens]
Length = 717
Score = 35.4 bits (80), Expect = 0.026
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 49 PAPALAPDQLPQNNTLVALPIVAIENILSFMS-YDEISQLRLVCKRMDLVCQRMLNQ--- 104
P P L ++ N ++ LP +E ILSF+S Y E LVCK+ + + + +Q
Sbjct: 32 PHPVLEAEETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYH 91
Query: 105 GFLKVERYHNL 115
GF+K + N+
Sbjct: 92 GFMKAVQEGNI 102
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 35.0 bits (79), Expect = 0.034
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 28 STQRQPPPPAPQHPQ--PGSQALPAPALAPDQLP 59
S Q+ PPPP Q PQ P QA P P AP Q P
Sbjct: 337 SKQQAPPPPPQQPPQAPPAPQAPPQPQAAPPQQP 370
Score = 34.7 bits (78), Expect = 0.045
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 31 RQPP--PPAPQHPQPGSQALPAPALAPDQLPQNNTLVAL 67
+QPP PPAPQ P A P AP Q PQ +TL L
Sbjct: 347 QQPPQAPPAPQAPPQPQAAPPQQPAAPPQQPQAHTLTTL 385
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 35.0 bits (79), Expect = 0.034
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 22 SSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLP 59
SSL + T PPPP P P P + AL APA+ P P
Sbjct: 338 SSLRASMTST-PPPPVPPPPPPPATALQAPAVPPPPAP 374
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 35.0 bits (79), Expect = 0.034
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 22 SSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLP 59
SSL + T PPPP P P P + AL APA+ P P
Sbjct: 338 SSLRASMTST-PPPPVPPPPPPPATALQAPAVPPPPAP 374
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 35.0 bits (79), Expect = 0.034
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 22 SSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLP 59
SSL + T PPPP P P P + AL APA+ P P
Sbjct: 338 SSLRASMTST-PPPPVPPPPPPPATALQAPAVPPPPAP 374
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 35.0 bits (79), Expect = 0.034
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 22 SSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLP 59
SSL + T PPPP P P P + AL APA+ P P
Sbjct: 338 SSLRASMTST-PPPPVPPPPPPPATALQAPAVPPPPAP 374
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 35.0 bits (79), Expect = 0.034
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 33 PPPPAPQHPQPGSQA-----LPAPALAPDQLPQNNTLVALPIVAIENILSFMSYDEISQL 87
PPPP PQ PQP QA P P P P + P+ + LS D ++
Sbjct: 46 PPPPPPQLPQPPPQAQPLLPQPQPPPPPPPPPPGPAVAEEPLHRPKKELSATKKDRVNHC 105
Query: 88 RLVCKRMDLVCQRMLN 103
+C+ ++V Q + N
Sbjct: 106 LTICE--NIVAQSVRN 119
Score = 26.9 bits (58), Expect = 9.4
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 30 QRQPPPPAPQHPQPGSQALP-APALAPDQLPQ 60
Q+QPPPP P P P LP P A LPQ
Sbjct: 38 QQQPPPPPPPPPPP---QLPQPPPQAQPLLPQ 66
Score = 26.9 bits (58), Expect = 9.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 30 QRQPPPPAPQHPQPGSQALPAPALAPDQL 58
Q QP P PQ P P P PA+A + L
Sbjct: 59 QAQPLLPQPQPPPPPPPPPPGPAVAEEPL 87
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 35.0 bits (79), Expect = 0.034
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 11 EEGGG--GQGDGGSSLASGSTQR------QPPPPAPQHPQ---PGSQALPAP 51
+ GG G G GG ASG R + PPP P+ P+ PGS+A PAP
Sbjct: 959 DSGGAAEGSGSGGGGRASGLRPRRNDGLGERPPPRPRRPRTQAPGSRADPAP 1010
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 35.0 bits (79), Expect = 0.034
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 33 PPPPAPQHPQPGSQALPAPALAPDQLP 59
PPPP P P PG LP P L P+ P
Sbjct: 840 PPPPPPPPPVPGPVTLPPPQLVPEGTP 866
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 35.0 bits (79), Expect = 0.034
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 18 GDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPAL 53
G GG L T PPPPAP P+PG A P P L
Sbjct: 402 GPGGVELVDMETLCAPPPPAPAAPRPG-PAQPGPCL 436
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 35.0 bits (79), Expect = 0.034
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 18 GDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPAL 53
G GG L T PPPPAP P+PG A P P L
Sbjct: 375 GPGGVELVDMETLCAPPPPAPAAPRPG-PAQPGPCL 409
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 34.7 bits (78), Expect = 0.045
Identities = 18/51 (35%), Positives = 19/51 (37%)
Query: 9 MAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLP 59
M GGGG+ PPPPAP QP PAP P P
Sbjct: 1 MDARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAP 51
Score = 27.7 bits (60), Expect = 5.5
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 17/60 (28%)
Query: 10 AEEGGGGQGDG-GSSLASGST---------QRQPPPPAPQHPQPGSQALPAPALAPDQLP 59
A GGG G+ G++ A G Q+ PPPP P P P P AP Q P
Sbjct: 3 ARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPP-------PGPGPAPPQHP 55
Score = 26.9 bits (58), Expect = 9.4
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 20 GGSSLASGSTQRQPPP---PAPQHPQPGSQALPAPALAPDQLPQNNTLVALP 68
G +L S R+PPP PA P P A P A A + P+ + LP
Sbjct: 748 GPLALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLP 799
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 34.7 bits (78), Expect = 0.045
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 33 PPPPAPQHPQPGSQALPAPALAP 55
PPPP P P P ++ +PAP LAP
Sbjct: 567 PPPPPPPLPGPAAETVPAPPLAP 589
Score = 28.1 bits (61), Expect = 4.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 33 PPPPAPQHPQPGSQALPAPA 52
PPPP P P P LP PA
Sbjct: 559 PPPPPPPPPPPPPPPLPGPA 578
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,901,939
Number of Sequences: 37866
Number of extensions: 438784
Number of successful extensions: 10527
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 368
Number of HSP's that attempted gapping in prelim test: 7512
Number of HSP's gapped (non-prelim): 2753
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.