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Search of human proteins with 209870062
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209870062 brain expressed, associated with Nedd4 [Homo
sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209870062 brain expressed, associated with Nedd4 [Homo sapiens] 324 2e-89
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 45 2e-05
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 45 2e-05
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 42 2e-04
gi|55750053 atrophin-1 [Homo sapiens] 40 6e-04
gi|55750041 atrophin-1 [Homo sapiens] 40 6e-04
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 40 7e-04
gi|13273315 homeobox B4 [Homo sapiens] 40 7e-04
gi|239747867 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 39 0.002
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 38 0.003
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 38 0.003
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 38 0.003
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 38 0.003
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 38 0.003
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 38 0.003
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 38 0.003
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 38 0.004
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 38 0.004
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 37 0.005
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.006
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.006
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 37 0.006
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 37 0.006
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 37 0.006
gi|209862789 microtubule associated monoxygenase, calponin and L... 37 0.006
gi|38348382 spermatogenesis associated 21 [Homo sapiens] 37 0.006
gi|239741142 PREDICTED: forkhead box protein O6 [Homo sapiens] 37 0.008
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 37 0.008
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 36 0.011
>gi|209870062 brain expressed, associated with Nedd4 [Homo sapiens]
Length = 150
Score = 324 bits (831), Expect = 2e-89
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MRYACSSSEDWPPPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPY 60
MRYACSSSEDWPPPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPY
Sbjct: 1 MRYACSSSEDWPPPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPY 60
Query: 61 SLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLL 120
SLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLL
Sbjct: 61 SLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLL 120
Query: 121 PLPGPDPGPRGSQGSPTPTRAPASGPERIV 150
PLPGPDPGPRGSQGSPTPTRAPASGPERIV
Sbjct: 121 PLPGPDPGPRGSQGSPTPTRAPASGPERIV 150
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 45.1 bits (105), Expect = 2e-05
Identities = 39/118 (33%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 33 PDSPPGYEECVGP------GATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQ 86
P PP Y P G+ + A P+ ++S PTL S SP
Sbjct: 64 PSRPPRYSSSSIPEPFGSRGSPRKAATDGADTPFGRSESAPTLHPYSPL----SPKGRPS 119
Query: 87 EQRTP------AQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTP 138
RTP A G L T P A GAG G P P P PGP QG PTP
Sbjct: 120 SPRTPLYLQPDAYGSLDRA---TSPRPRAFDGAGSSLGRAPSPRPGPGPLRQQGPPTP 174
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 45.1 bits (105), Expect = 2e-05
Identities = 39/118 (33%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 33 PDSPPGYEECVGP------GATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQ 86
P PP Y P G+ + A P+ ++S PTL S SP
Sbjct: 64 PSRPPRYSSSSIPEPFGSRGSPRKAATDGADTPFGRSESAPTLHPYSPL----SPKGRPS 119
Query: 87 EQRTP------AQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTP 138
RTP A G L T P A GAG G P P P PGP QG PTP
Sbjct: 120 SPRTPLYLQPDAYGSLDRA---TSPRPRAFDGAGSSLGRAPSPRPGPGPLRQQGPPTP 174
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 42.0 bits (97), Expect = 2e-04
Identities = 38/126 (30%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 36 PPGYEECVGPGATQLYVPTDAPPPYS-LTDSCP------TLDGTSDSGSGHSPGRHQQEQ 88
PP + P Q P PPP S + S P T T+ +G+G P QQ+
Sbjct: 490 PPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQA 549
Query: 89 RTPAQGGLHTV----SMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPAS 144
A G + +M LPP V PP P P P PG G +P P P
Sbjct: 550 AAAASPGAPQMQGNPTMVPLPP--GVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPM 607
Query: 145 GPERIV 150
P V
Sbjct: 608 DPSNFV 613
Score = 36.2 bits (82), Expect = 0.011
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 53 PTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDT--LPPYEAV 110
P PPP+ P G G P Q TP G++ + +PP
Sbjct: 417 PNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPP---- 472
Query: 111 CGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPASGP 146
PP G++P P P P G P P P SGP
Sbjct: 473 ----PPMGMMPPPPPPP-----SGQPPP---PPSGP 496
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 40.4 bits (93), Expect = 6e-04
Identities = 43/138 (31%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 11 WPPPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCPTLD 70
+PP +++ +TV+ + SP GY+ PG PPPY P
Sbjct: 601 FPPVPTVTTSSATLSTVIATV-ASSPAGYKTASPPG----------PPPYGKRAPSPGAY 649
Query: 71 GTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDP--G 128
T+ + G+ PG RT G S PP A G P PGP P G
Sbjct: 650 KTA-TPPGYKPGS-PPSFRTGTPPGYRGTS----PP--AGPGTFKPGSPTVGPGPLPPAG 701
Query: 129 PRGSQGSPTPTRAPASGP 146
P G P P APASGP
Sbjct: 702 PSGLPSLPPPPAAPASGP 719
Score = 29.3 bits (64), Expect = 1.3
Identities = 50/194 (25%), Positives = 65/194 (33%), Gaps = 59/194 (30%)
Query: 12 PPPLDISSDGDVDATVLR-----ELYPD-SPPGYEECVGPGATQLY-VPTDAPPPY---- 60
PPPL S D+T + E +P +P GY + P ++++ P APPP+
Sbjct: 161 PPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLY 220
Query: 61 --------SLTDSCPTLDGTSDSGSGHSPGRHQQEQRTP-------AQGGLHTVSMDT-- 103
S P G + S G + G+ TP A G T T
Sbjct: 221 PGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPV 280
Query: 104 --------------------LPPYEAV-----CGAGPPS-GLLPLPGPDPGPRG-SQG-- 134
LPP A+ A PP G PLPG P P QG
Sbjct: 281 GGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMG 340
Query: 135 --SPTPTRAPASGP 146
P P + P P
Sbjct: 341 GLPPGPEKGPTLAP 354
Score = 28.5 bits (62), Expect = 2.2
Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 28/135 (20%)
Query: 12 PP--PLDISSDGDVDATVLRELYPDSPP------GYEECVGPGATQLYVPTDAPPPYSLT 63
PP P+ +SS G A P PP G P A +V + PPP +L
Sbjct: 255 PPTTPISVSSSGASGAP------PTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALR 308
Query: 64 DSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLP 123
G+ PG H QG M LPP GP G P
Sbjct: 309 PLNNASASPPGLGAQPLPG-HLPSPHAMGQG------MGGLPP-------GPEKGPTLAP 354
Query: 124 GPDPGPRGSQGSPTP 138
P P S +P P
Sbjct: 355 SPHSLPPASSSAPAP 369
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 40.4 bits (93), Expect = 6e-04
Identities = 43/138 (31%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 11 WPPPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCPTLD 70
+PP +++ +TV+ + SP GY+ PG PPPY P
Sbjct: 601 FPPVPTVTTSSATLSTVIATV-ASSPAGYKTASPPG----------PPPYGKRAPSPGAY 649
Query: 71 GTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDP--G 128
T+ + G+ PG RT G S PP A G P PGP P G
Sbjct: 650 KTA-TPPGYKPGS-PPSFRTGTPPGYRGTS----PP--AGPGTFKPGSPTVGPGPLPPAG 701
Query: 129 PRGSQGSPTPTRAPASGP 146
P G P P APASGP
Sbjct: 702 PSGLPSLPPPPAAPASGP 719
Score = 29.3 bits (64), Expect = 1.3
Identities = 50/194 (25%), Positives = 65/194 (33%), Gaps = 59/194 (30%)
Query: 12 PPPLDISSDGDVDATVLR-----ELYPD-SPPGYEECVGPGATQLY-VPTDAPPPY---- 60
PPPL S D+T + E +P +P GY + P ++++ P APPP+
Sbjct: 161 PPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLY 220
Query: 61 --------SLTDSCPTLDGTSDSGSGHSPGRHQQEQRTP-------AQGGLHTVSMDT-- 103
S P G + S G + G+ TP A G T T
Sbjct: 221 PGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPV 280
Query: 104 --------------------LPPYEAV-----CGAGPPS-GLLPLPGPDPGPRG-SQG-- 134
LPP A+ A PP G PLPG P P QG
Sbjct: 281 GGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMG 340
Query: 135 --SPTPTRAPASGP 146
P P + P P
Sbjct: 341 GLPPGPEKGPTLAP 354
Score = 28.5 bits (62), Expect = 2.2
Identities = 37/135 (27%), Positives = 44/135 (32%), Gaps = 28/135 (20%)
Query: 12 PP--PLDISSDGDVDATVLRELYPDSPP------GYEECVGPGATQLYVPTDAPPPYSLT 63
PP P+ +SS G A P PP G P A +V + PPP +L
Sbjct: 255 PPTTPISVSSSGASGAP------PTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALR 308
Query: 64 DSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLP 123
G+ PG H QG M LPP GP G P
Sbjct: 309 PLNNASASPPGLGAQPLPG-HLPSPHAMGQG------MGGLPP-------GPEKGPTLAP 354
Query: 124 GPDPGPRGSQGSPTP 138
P P S +P P
Sbjct: 355 SPHSLPPASSSAPAP 369
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 40.0 bits (92), Expect = 7e-04
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 17/116 (14%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPA 92
P PP VG A VP A PP P +S S S PG R
Sbjct: 252 PGGPP-----VGAEAWARRVPQPAAPPRR-----PPQSASSLSASLRPPGAPATFLRPSP 301
Query: 93 QGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPASGPER 148
+ + P++++CG GPP P P PG R S G +P R+P + R
Sbjct: 302 ------IPCSSPGPWQSLCGLGPPCAGCPWPTAGPG-RRSPGGTSPERSPGTARAR 350
Score = 28.5 bits (62), Expect = 2.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 104 LPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPASGPERIV 150
+P + V GA PP G P + P S+ SP AP +GP +V
Sbjct: 137 MPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLV 183
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 40.0 bits (92), Expect = 7e-04
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 51 YVPTDAPP--PYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYE 108
YV PP YS +D P SD G+ G ++E + G + T+ Y
Sbjct: 12 YVDPKFPPCEEYSQSDYLP-----SDHSPGYYAGGQRRESSFQPEAGFGRRAACTVQRYA 66
Query: 109 AVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPASGPE 147
A GPP P P P P P S +P P A A PE
Sbjct: 67 ACRDPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPE 105
>gi|239747867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.002
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 42/163 (25%)
Query: 17 ISSDGDVDATVLRELYPDSPPGYEECVG----------------------PGATQLYVPT 54
+ DG +D +R SPP + CV P +Q+ P
Sbjct: 1 MGEDGQLDTWRVRSTGGSSPPVFPACVPQRPLCGSPGPESRCQPLNRGTYPVRSQVAAPL 60
Query: 55 DAPPPYSLTDSCPTL-------DGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPY 107
+P P + P SG H P +QR+ +GG TL P
Sbjct: 61 LSPEPQTHHPDTPLWPWLLCLPQAVHASGMQHIPSAQASKQRS--RGGAQP---STLSPA 115
Query: 108 EAVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPASGPERIV 150
E + G +G + LP PDPGP +P+ + PA GP+ +V
Sbjct: 116 EELLRPG--AGAVGLPSPDPGP-----APSGKKLPA-GPDLVV 150
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 38.5 bits (88), Expect = 0.002
Identities = 38/125 (30%), Positives = 46/125 (36%), Gaps = 21/125 (16%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPA 92
P PPG+ + GAT L P+ PP P G P ++ EQ
Sbjct: 155 PPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKG---------PTGYKGEQGEVG 205
Query: 93 QGGLHTVSMDTLPPYEA----VCGAGPPSGLLPLPGP-----DPGPRGSQGSPTPTRAPA 143
+ G D PP A G P GL LPGP D GP G +G P AP
Sbjct: 206 KDG---EKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPG 262
Query: 144 SGPER 148
+R
Sbjct: 263 KAGDR 267
Score = 28.9 bits (63), Expect = 1.7
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 112 GAGPPSGLLPLPGPDPGPRGSQGSP 136
G PSGL LPGP PGP G G P
Sbjct: 139 GPPGPSGLPGLPGP-PGPPGPPGHP 162
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 38.1 bits (87), Expect = 0.003
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 38/147 (25%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCP-TLDGTSDSGSGHSPGRHQQEQRTP 91
PD P G GP P P P ++ P G++ S G SPG P
Sbjct: 4 PDPPLGGTPRPGPS------PGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIP 57
Query: 92 AQG-----------------GLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP--RGS 132
QG +H M P Y + G G SG GP P P + S
Sbjct: 58 TQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHS 117
Query: 133 QG------------SPTPTRAPASGPE 147
QG SP P P+SGP+
Sbjct: 118 QGYPSPLGGSEHASSPVPASGPSSGPQ 144
Score = 30.4 bits (67), Expect = 0.59
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 25/119 (21%)
Query: 45 PGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTL 104
P Q+ V P P + PTL S S +G PG P
Sbjct: 197 PDHLQMAVQGKRPMP-GMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAP--------- 246
Query: 105 PPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSP-------------TPTRAPASGPERIV 150
P Y G G P+ +P PGP P G G P AP S P++++
Sbjct: 247 PNYSRPHGMGGPN--MPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 38.1 bits (87), Expect = 0.003
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 38/147 (25%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCP-TLDGTSDSGSGHSPGRHQQEQRTP 91
PD P G GP P P P ++ P G++ S G SPG P
Sbjct: 4 PDPPLGGTPRPGPS------PGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIP 57
Query: 92 AQG-----------------GLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP--RGS 132
QG +H M P Y + G G SG GP P P + S
Sbjct: 58 TQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHS 117
Query: 133 QG------------SPTPTRAPASGPE 147
QG SP P P+SGP+
Sbjct: 118 QGYPSPLGGSEHASSPVPASGPSSGPQ 144
Score = 30.4 bits (67), Expect = 0.59
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 25/119 (21%)
Query: 45 PGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTL 104
P Q+ V P P + PTL S S +G PG P
Sbjct: 197 PDHLQMAVQGKRPMP-GMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAP--------- 246
Query: 105 PPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSP-------------TPTRAPASGPERIV 150
P Y G G P+ +P PGP P G G P AP S P++++
Sbjct: 247 PNYSRPHGMGGPN--MPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 38.1 bits (87), Expect = 0.003
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 38/147 (25%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCP-TLDGTSDSGSGHSPGRHQQEQRTP 91
PD P G GP P P P ++ P G++ S G SPG P
Sbjct: 4 PDPPLGGTPRPGPS------PGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIP 57
Query: 92 AQG-----------------GLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP--RGS 132
QG +H M P Y + G G SG GP P P + S
Sbjct: 58 TQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHS 117
Query: 133 QG------------SPTPTRAPASGPE 147
QG SP P P+SGP+
Sbjct: 118 QGYPSPLGGSEHASSPVPASGPSSGPQ 144
Score = 30.4 bits (67), Expect = 0.59
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 25/119 (21%)
Query: 45 PGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTL 104
P Q+ V P P + PTL S S +G PG P
Sbjct: 197 PDHLQMAVQGKRPMP-GMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAP--------- 246
Query: 105 PPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSP-------------TPTRAPASGPERIV 150
P Y G G P+ +P PGP P G G P AP S P++++
Sbjct: 247 PNYSRPHGMGGPN--MPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 38.1 bits (87), Expect = 0.003
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 38/147 (25%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCP-TLDGTSDSGSGHSPGRHQQEQRTP 91
PD P G GP P P P ++ P G++ S G SPG P
Sbjct: 4 PDPPLGGTPRPGPS------PGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIP 57
Query: 92 AQG-----------------GLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP--RGS 132
QG +H M P Y + G G SG GP P P + S
Sbjct: 58 TQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHS 117
Query: 133 QG------------SPTPTRAPASGPE 147
QG SP P P+SGP+
Sbjct: 118 QGYPSPLGGSEHASSPVPASGPSSGPQ 144
Score = 30.4 bits (67), Expect = 0.59
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 25/119 (21%)
Query: 45 PGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTL 104
P Q+ V P P + PTL S S +G PG P
Sbjct: 197 PDHLQMAVQGKRPMP-GMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAP--------- 246
Query: 105 PPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSP-------------TPTRAPASGPERIV 150
P Y G G P+ +P PGP P G G P AP S P++++
Sbjct: 247 PNYSRPHGMGGPN--MPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 38.1 bits (87), Expect = 0.003
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 38/147 (25%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCP-TLDGTSDSGSGHSPGRHQQEQRTP 91
PD P G GP P P P ++ P G++ S G SPG P
Sbjct: 4 PDPPLGGTPRPGPS------PGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIP 57
Query: 92 AQG-----------------GLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP--RGS 132
QG +H M P Y + G G SG GP P P + S
Sbjct: 58 TQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHS 117
Query: 133 QG------------SPTPTRAPASGPE 147
QG SP P P+SGP+
Sbjct: 118 QGYPSPLGGSEHASSPVPASGPSSGPQ 144
Score = 30.4 bits (67), Expect = 0.59
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 25/119 (21%)
Query: 45 PGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTL 104
P Q+ V P P + PTL S S +G PG P
Sbjct: 197 PDHLQMAVQGKRPMP-GMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAP--------- 246
Query: 105 PPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSP-------------TPTRAPASGPERIV 150
P Y G G P+ +P PGP P G G P AP S P++++
Sbjct: 247 PNYSRPHGMGGPN--MPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 38.1 bits (87), Expect = 0.003
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 38/147 (25%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCP-TLDGTSDSGSGHSPGRHQQEQRTP 91
PD P G GP P P P ++ P G++ S G SPG P
Sbjct: 4 PDPPLGGTPRPGPS------PGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIP 57
Query: 92 AQG-----------------GLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP--RGS 132
QG +H M P Y + G G SG GP P P + S
Sbjct: 58 TQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHS 117
Query: 133 QG------------SPTPTRAPASGPE 147
QG SP P P+SGP+
Sbjct: 118 QGYPSPLGGSEHASSPVPASGPSSGPQ 144
Score = 30.4 bits (67), Expect = 0.59
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 25/119 (21%)
Query: 45 PGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTL 104
P Q+ V P P + PTL S S +G PG P
Sbjct: 197 PDHLQMAVQGKRPMP-GMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAP--------- 246
Query: 105 PPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSP-------------TPTRAPASGPERIV 150
P Y G G P+ +P PGP P G G P AP S P++++
Sbjct: 247 PNYSRPHGMGGPN--MPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 38.1 bits (87), Expect = 0.003
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 38/147 (25%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCP-TLDGTSDSGSGHSPGRHQQEQRTP 91
PD P G GP P P P ++ P G++ S G SPG P
Sbjct: 4 PDPPLGGTPRPGPS------PGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIP 57
Query: 92 AQG-----------------GLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP--RGS 132
QG +H M P Y + G G SG GP P P + S
Sbjct: 58 TQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHS 117
Query: 133 QG------------SPTPTRAPASGPE 147
QG SP P P+SGP+
Sbjct: 118 QGYPSPLGGSEHASSPVPASGPSSGPQ 144
Score = 30.4 bits (67), Expect = 0.59
Identities = 31/119 (26%), Positives = 40/119 (33%), Gaps = 25/119 (21%)
Query: 45 PGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTL 104
P Q+ V P P + PTL S S +G PG P
Sbjct: 197 PDHLQMAVQGKRPMP-GMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAP--------- 246
Query: 105 PPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSP-------------TPTRAPASGPERIV 150
P Y G G P+ +P PGP P G G P AP S P++++
Sbjct: 247 PNYSRPHGMGGPN--MPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLI 303
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 37.7 bits (86), Expect = 0.004
Identities = 38/122 (31%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Query: 36 PPGYEECVGPGATQLYVPTDAPPPYS-LTDSCP------TLDGTSDSGSGHSPGRHQQEQ 88
PP + P Q P PPP S + S P T T+ +G+G P QQ+
Sbjct: 490 PPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQA 549
Query: 89 RTPAQGGLHTV----SMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPAS 144
A G + +M LPP G PP P P P P GS G P R
Sbjct: 550 AAAASPGAPQMQGNPTMVPLPP-----GVQPPLPPGAPPPPPPPPPGSAGMMIPPRG-GD 603
Query: 145 GP 146
GP
Sbjct: 604 GP 605
Score = 36.2 bits (82), Expect = 0.011
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 53 PTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDT--LPPYEAV 110
P PPP+ P G G P Q TP G++ + +PP
Sbjct: 417 PNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPP---- 472
Query: 111 CGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPASGP 146
PP G++P P P P G P P P SGP
Sbjct: 473 ----PPMGMMPPPPPPP-----SGQPPP---PPSGP 496
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 37.7 bits (86), Expect = 0.004
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 16/126 (12%)
Query: 9 EDWPPPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCPT 68
E PPPL+ S+ + + L P P + P P PP ++ + PT
Sbjct: 1565 EPLPPPLEFSNSFEKPESPLT---PGPPHPLPDTPAPAT-----PLPPVPPPAVAAAPPT 1616
Query: 69 LDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPG 128
LD T+ S + + E T QG D PP A P+ P PGPDP
Sbjct: 1617 LDSTASSLTSYD-----SEVATLTQGA-SAAPGDPHPPGPPAPAAPAPAA--PQPGPDPP 1668
Query: 129 PRGSQG 134
P G
Sbjct: 1669 PGTDSG 1674
Score = 31.2 bits (69), Expect = 0.34
Identities = 29/94 (30%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 53 PTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCG 112
P A P + PT+ + S S S GR Q T A+ P G
Sbjct: 1142 PAVAAPSEKNSIPIPTIIIKAPSTS--SSGRSSQGSSTEAEP----------PTQPEPTG 1189
Query: 113 AGPPSGLLPLPGPDPGPRGSQGSPTPTRAPASGP 146
G G P P P P SP PT A SGP
Sbjct: 1190 GGGGGGSSPSPAPAMSPVPPSPSPVPTPASPSGP 1223
Score = 27.3 bits (59), Expect = 5.0
Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPA 92
P + PG VGP QL AP P G S +P ++ +R P
Sbjct: 1449 PPTAPG----VGPLLLQLGTEPPAPHP-----------GVSKPWRSAAP---EEPERLP- 1489
Query: 93 QGGLHTVSMDTLPPYEAVC-GAGPPSGLLPLPG-PDPGPRGSQGSPTPTRAPAS 144
LH ++ P V G GPPS PG P P PR S P+PT AS
Sbjct: 1490 ---LHVRFLENCQPRAPVTSGRGPPSE--DGPGVPPPSPRRSV-PPSPTSPRAS 1537
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 37.4 bits (85), Expect = 0.005
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 56 APPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAG- 114
APPP L S + G+S S G G Q P G + V E G
Sbjct: 40 APPPPPLAPSSSSSSGSSGSSGGGGSGSAGQ----PTLGSMLAVGSAARRASERAGGRAG 95
Query: 115 --------PPSGLLPLPG-PDPGPRGSQGSPTPTRAP 142
PP LLP P P PGP+G SP P +P
Sbjct: 96 GTALRAREPPPPLLPPPSPPQPGPKG-PASPRPLPSP 131
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 37.0 bits (84), Expect = 0.006
Identities = 39/137 (28%), Positives = 51/137 (37%), Gaps = 11/137 (8%)
Query: 13 PPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPY---SLTDSCPTL 69
P L + T+ P +P GP T P PPP S T S P L
Sbjct: 569 PLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 628
Query: 70 DGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP 129
G S S + +P + P G + PP +A A P+ P P
Sbjct: 629 AGHSSSATS-TPEELRGYDSGPEGGAAAS------PPPDAELAACHPAAWSRGPAPPLAF 681
Query: 130 RGSQGSPTPTRAPASGP 146
RG+ G+P P PA+GP
Sbjct: 682 RGAPGAPLPW-PPATGP 697
Score = 26.9 bits (58), Expect = 6.5
Identities = 34/126 (26%), Positives = 41/126 (32%), Gaps = 17/126 (13%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTD--------SCPTLDGTSDSGSGHSPGRH 84
P SPP + P AT P APPP + P T + SP
Sbjct: 482 PPSPPASPP-MSPSATP---PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPAS 537
Query: 85 QQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPAS 144
Q + +S PP +A PP PL P P S P R P
Sbjct: 538 FPGQAPFSPSASLPMSPLATPPPQA-----PPVLAAPLLQVPPSPPASPTLQAPRRPPTP 592
Query: 145 GPERIV 150
GP+ V
Sbjct: 593 GPDTSV 598
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 37.0 bits (84), Expect = 0.006
Identities = 39/137 (28%), Positives = 51/137 (37%), Gaps = 11/137 (8%)
Query: 13 PPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPY---SLTDSCPTL 69
P L + T+ P +P GP T P PPP S T S P L
Sbjct: 838 PLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 897
Query: 70 DGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP 129
G S S + +P + P G + PP +A A P+ P P
Sbjct: 898 AGHSSSATS-TPEELRGYDSGPEGGAAAS------PPPDAELAACHPAAWSRGPAPPLAF 950
Query: 130 RGSQGSPTPTRAPASGP 146
RG+ G+P P PA+GP
Sbjct: 951 RGAPGAPLPW-PPATGP 966
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 37.0 bits (84), Expect = 0.006
Identities = 39/137 (28%), Positives = 51/137 (37%), Gaps = 11/137 (8%)
Query: 13 PPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPY---SLTDSCPTL 69
P L + T+ P +P GP T P PPP S T S P L
Sbjct: 530 PLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDL 589
Query: 70 DGTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGP 129
G S S + +P + P G + PP +A A P+ P P
Sbjct: 590 AGHSSSATS-TPEELRGYDSGPEGGAAAS------PPPDAELAACHPAAWSRGPAPPLAF 642
Query: 130 RGSQGSPTPTRAPASGP 146
RG+ G+P P PA+GP
Sbjct: 643 RGAPGAPLPW-PPATGP 658
Score = 26.9 bits (58), Expect = 6.5
Identities = 34/126 (26%), Positives = 41/126 (32%), Gaps = 17/126 (13%)
Query: 33 PDSPPGYEECVGPGATQLYVPTDAPPPYSLTD--------SCPTLDGTSDSGSGHSPGRH 84
P SPP + P AT P APPP + P T + SP
Sbjct: 443 PPSPPASPP-MSPSATP---PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPAS 498
Query: 85 QQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPAS 144
Q + +S PP +A PP PL P P S P R P
Sbjct: 499 FPGQAPFSPSASLPMSPLATPPPQA-----PPVLAAPLLQVPPSPPASPTLQAPRRPPTP 553
Query: 145 GPERIV 150
GP+ V
Sbjct: 554 GPDTSV 559
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 37.0 bits (84), Expect = 0.006
Identities = 36/112 (32%), Positives = 44/112 (39%), Gaps = 22/112 (19%)
Query: 44 GPGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGG--LHTVSM 101
G A +V APPP P +S SGH Q P QG + +
Sbjct: 1702 GLQAQHQHVVNSAPPPP------PPPPPSSVLASGHHTTSAQALHHPPHQGPPLFPSSAH 1755
Query: 102 DTLPPYEA------VCGAGP---PSGL-----LPLPGPDPGPRGSQGSPTPT 139
T+PPY + G GP PSG LP+ GP P+G PTPT
Sbjct: 1756 PTVPPYPSQATHHTTLGPGPQHQPSGTGPHCPLPVTGPHLQPQGPNSIPTPT 1807
Score = 28.5 bits (62), Expect = 2.2
Identities = 31/122 (25%), Positives = 39/122 (31%), Gaps = 12/122 (9%)
Query: 33 PDSPPGYEECVGPG-----ATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHS---PGRH 84
P PP + G A L+ P PP + + PT+ + H+ PG
Sbjct: 1717 PPPPPPPSSVLASGHHTTSAQALHHPPHQGPPLFPSSAHPTVPPYPSQATHHTTLGPGPQ 1776
Query: 85 QQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQG----SPTPTR 140
Q T L P SG P PG P G QG SP P +
Sbjct: 1777 HQPSGTGPHCPLPVTGPHLQPQGPNSIPTPTASGFCPHPGSVALPHGVQGPQQASPVPGQ 1836
Query: 141 AP 142
P
Sbjct: 1837 IP 1838
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 37.0 bits (84), Expect = 0.006
Identities = 36/112 (32%), Positives = 44/112 (39%), Gaps = 22/112 (19%)
Query: 44 GPGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGG--LHTVSM 101
G A +V APPP P +S SGH Q P QG + +
Sbjct: 1702 GLQAQHQHVVNSAPPPP------PPPPPSSVLASGHHTTSAQALHHPPHQGPPLFPSSAH 1755
Query: 102 DTLPPYEA------VCGAGP---PSGL-----LPLPGPDPGPRGSQGSPTPT 139
T+PPY + G GP PSG LP+ GP P+G PTPT
Sbjct: 1756 PTVPPYPSQATHHTTLGPGPQHQPSGTGPHCPLPVTGPHLQPQGPNSIPTPT 1807
Score = 28.5 bits (62), Expect = 2.2
Identities = 31/122 (25%), Positives = 39/122 (31%), Gaps = 12/122 (9%)
Query: 33 PDSPPGYEECVGPG-----ATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHS---PGRH 84
P PP + G A L+ P PP + + PT+ + H+ PG
Sbjct: 1717 PPPPPPPSSVLASGHHTTSAQALHHPPHQGPPLFPSSAHPTVPPYPSQATHHTTLGPGPQ 1776
Query: 85 QQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQG----SPTPTR 140
Q T L P SG P PG P G QG SP P +
Sbjct: 1777 HQPSGTGPHCPLPVTGPHLQPQGPNSIPTPTASGFCPHPGSVALPHGVQGPQQASPVPGQ 1836
Query: 141 AP 142
P
Sbjct: 1837 IP 1838
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 37.0 bits (84), Expect = 0.006
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 45 PGATQLYVPTDA--PPPYSLTDSCPTLDGTSDSGSGHSPGRHQ----QEQRTPAQGG--- 95
P ATQ P + P P L P D SD + HSP R Q E RTP G
Sbjct: 1185 PAATQEKSPEERLFPEPL-LPKEKPKADAPSDLKAVHSPIRSQPVTLPEARTPVSPGSPQ 1243
Query: 96 -LHTVSMDTLPPYE-AVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAP 142
V+ T PP +C PS +P P P Q +P T P
Sbjct: 1244 PQPPVAASTPPPSPLPICSQPQPSTEATVPSPTQSPIRFQPAPAKTSTP 1292
>gi|38348382 spermatogenesis associated 21 [Homo sapiens]
Length = 469
Score = 37.0 bits (84), Expect = 0.006
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 80 SPGRHQQEQRTPAQGGLHTVSMDTLPPYEA-VCGAGPPSGLLPLPGPDPGPRGSQGSPTP 138
S R Q Q++P S +LP A V +GP LP PGP+P P G+P P
Sbjct: 103 SKARSQTAQKSPRTLTPVPTSAPSLPQTPASVPASGPSWARLPAPGPEPAP---MGAPVP 159
Query: 139 TRAP 142
T P
Sbjct: 160 TSMP 163
>gi|239741142 PREDICTED: forkhead box protein O6 [Homo sapiens]
Length = 492
Score = 36.6 bits (83), Expect = 0.008
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 2/110 (1%)
Query: 38 GYEECVGPGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRHQQEQRTPAQGGL- 96
G E + GA Y P AP P + + L + + G P++ L
Sbjct: 317 GLPEGLLDGAQDAYGPRPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALA 376
Query: 97 HTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPASGP 146
H +S+ TLP G PP GP PG P P A A+GP
Sbjct: 377 HPISLMTLPGEAGAAGLAPPGHAAAFGGP-PGGLLLDALPGPYAAAAAGP 425
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 36.6 bits (83), Expect = 0.008
Identities = 33/124 (26%), Positives = 41/124 (33%), Gaps = 22/124 (17%)
Query: 44 GPGATQLYVPTDAPPPYSLTDSCPTLDGTSDSGSGHSPGRH----QQEQRTP-------- 91
GPG + P PPP+ P H P H QQ+Q P
Sbjct: 50 GPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKP 109
Query: 92 --AQGGLHTVSMDTLPPYEA--------VCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRA 141
AQG + + PP + GA P SG P P P P + P
Sbjct: 110 VVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTP 169
Query: 142 PASG 145
P+SG
Sbjct: 170 PSSG 173
Score = 33.9 bits (76), Expect = 0.053
Identities = 41/140 (29%), Positives = 46/140 (32%), Gaps = 23/140 (16%)
Query: 12 PPPLDISSDGDVDATVLRELYPDSPPGYEECVGPGATQLYVPTDAPPPYSLTDSCPTLDG 71
PPP D S +PP P AT PT PP S PT
Sbjct: 101 PPPQDSSKPVVAQGPGPAPGVGSAPPASSSA--PPATP---PTSGAPPGSGPGPTPTPPP 155
Query: 72 TSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGP----DP 127
S +P TP G+ T PP G PP +P PGP P
Sbjct: 156 AVTSAPPGAP------PPTPPSSGVPTT-----PPQAG--GPPPPPAAVPGPGPGPKQGP 202
Query: 128 GPRGSQGSPTP-TRAPASGP 146
GP G +G P P GP
Sbjct: 203 GPGGPKGGKMPGGPKPGGGP 222
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 36.2 bits (82), Expect = 0.011
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 71 GTSDSGSGHSPGRHQQEQRTPAQGGLHTVSMDTLPPYEAVCGAGPPS-GLLPLPGPDPGP 129
G+S G PG E A GGL S + L C PPS G+LP P PGP
Sbjct: 35 GSSAHAGGLRPGDQILEVEGLAVGGL---SRERLVRLARRCPRVPPSLGVLPAPDGGPGP 91
Query: 130 RGSQGSPTPT-RAPASG 145
+PT RAP G
Sbjct: 92 GSGPAAPTTVLRAPRCG 108
Score = 33.1 bits (74), Expect = 0.090
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 94 GGLHTVSMDTLPPYEAVCGAGPPSGLLPLPGPDPGPRGSQGSPTPTRAPA 143
GGL + S PY ++ + PS P PGP P S SP PTR P+
Sbjct: 617 GGLASPSSSESHPYASLDSSRAPS---PQPGPGPICPDSPPSPDPTRPPS 663
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,327,990
Number of Sequences: 37866
Number of extensions: 728432
Number of successful extensions: 5828
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 569
Number of HSP's that attempted gapping in prelim test: 3891
Number of HSP's gapped (non-prelim): 2192
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.