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Search of human proteins with 209862809
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209862809 FXYD domain containing ion transport regulator 3
isoform 3 [Homo sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209862809 FXYD domain containing ion transport regulator 3 is... 297 2e-81
gi|209862817 FXYD domain containing ion transport regulator 3 is... 185 1e-47
gi|5174635 FXYD domain containing ion transport regulator 3 isof... 185 1e-47
gi|209862819 FXYD domain containing ion transport regulator 3 is... 171 3e-43
gi|11612674 FXYD domain containing ion transport regulator 3 iso... 171 3e-43
gi|209862811 FXYD domain containing ion transport regulator 3 is... 134 3e-32
gi|27764904 FXYD domain containing ion transport regulator 4 [Ho... 89 1e-18
gi|209862815 FXYD domain containing ion transport regulator 3 is... 69 2e-12
gi|209862813 FXYD domain containing ion transport regulator 3 is... 69 2e-12
gi|11612672 phospholemman precursor [Homo sapiens] 64 3e-11
gi|11612670 phospholemman precursor [Homo sapiens] 64 3e-11
gi|169194724 PREDICTED: similar to FXYD domain-containing ion tr... 63 7e-11
gi|169194767 PREDICTED: similar to FXYD domain-containing ion tr... 63 7e-11
gi|169190389 PREDICTED: similar to FXYD domain-containing ion tr... 63 7e-11
gi|11612655 FXYD domain-containing ion transport regulator 6 [Ho... 61 3e-10
gi|11612659 FXYD domain-containing ion transport regulator 7 [Ho... 44 6e-05
gi|11125764 FXYD domain-containing ion transport regulator 2 iso... 41 3e-04
gi|47778938 FXYD domain-containing ion transport regulator 5 [Ho... 41 3e-04
gi|21618361 FXYD domain-containing ion transport regulator 5 [Ho... 41 3e-04
gi|11125766 FXYD domain-containing ion transport regulator 2 iso... 41 4e-04
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 32 0.24
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 30 0.70
gi|29171740 phosphatidic acid phosphatase type 2B [Homo sapiens] 30 0.70
gi|29171742 phosphatidic acid phosphatase type 2B [Homo sapiens] 30 0.70
gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo ... 30 0.91
gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo ... 30 0.91
gi|13699803 WAS protein family, member 3 [Homo sapiens] 29 1.2
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 28 2.0
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 28 2.7
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens] 27 4.5
>gi|209862809 FXYD domain containing ion transport regulator 3
isoform 3 [Homo sapiens]
Length = 144
Score = 297 bits (761), Expect = 2e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MGRGYSGALQARGGLEEPLERGLRGPSFTQSPLHGAAAAYLSAQRDASLPVPGQRSDMQK 60
MGRGYSGALQARGGLEEPLERGLRGPSFTQSPLHGAAAAYLSAQRDASLPVPGQRSDMQK
Sbjct: 1 MGRGYSGALQARGGLEEPLERGLRGPSFTQSPLHGAAAAYLSAQRDASLPVPGQRSDMQK 60
Query: 61 VTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKC 120
VTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKC
Sbjct: 61 VTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKC 120
Query: 121 KFGQKSGHHPGETPPLITPGSAQS 144
KFGQKSGHHPGETPPLITPGSAQS
Sbjct: 121 KFGQKSGHHPGETPPLITPGSAQS 144
>gi|209862817 FXYD domain containing ion transport regulator 3
isoform 1 precursor [Homo sapiens]
Length = 87
Score = 185 bits (469), Expect = 1e-47
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 117
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
Query: 118 CKCKFGQKSGHHPGETPPLITPGSAQS 144
CKCKFGQKSGHHPGETPPLITPGSAQS
Sbjct: 61 CKCKFGQKSGHHPGETPPLITPGSAQS 87
>gi|5174635 FXYD domain containing ion transport regulator 3 isoform
1 precursor [Homo sapiens]
Length = 87
Score = 185 bits (469), Expect = 1e-47
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 117
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 60
Query: 118 CKCKFGQKSGHHPGETPPLITPGSAQS 144
CKCKFGQKSGHHPGETPPLITPGSAQS
Sbjct: 61 CKCKFGQKSGHHPGETPPLITPGSAQS 87
>gi|209862819 FXYD domain containing ion transport regulator 3
isoform 2 precursor [Homo sapiens]
Length = 113
Score = 171 bits (432), Expect = 3e-43
Identities = 87/113 (76%), Positives = 87/113 (76%), Gaps = 26/113 (23%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS-- 115
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSEW 60
Query: 116 ------------------------AKCKCKFGQKSGHHPGETPPLITPGSAQS 144
AKCKCKFGQKSGHHPGETPPLITPGSAQS
Sbjct: 61 RSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKSGHHPGETPPLITPGSAQS 113
>gi|11612674 FXYD domain containing ion transport regulator 3
isoform 2 precursor [Homo sapiens]
Length = 113
Score = 171 bits (432), Expect = 3e-43
Identities = 87/113 (76%), Positives = 87/113 (76%), Gaps = 26/113 (23%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS-- 115
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSEW 60
Query: 116 ------------------------AKCKCKFGQKSGHHPGETPPLITPGSAQS 144
AKCKCKFGQKSGHHPGETPPLITPGSAQS
Sbjct: 61 RSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKSGHHPGETPPLITPGSAQS 113
>gi|209862811 FXYD domain containing ion transport regulator 3
isoform4 precursor [Homo sapiens]
Length = 96
Score = 134 bits (336), Expect = 3e-32
Identities = 70/96 (72%), Positives = 70/96 (72%), Gaps = 26/96 (27%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS-- 115
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMS
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSEW 60
Query: 116 ------------------------AKCKCKFGQKSG 127
AKCKCKFGQKSG
Sbjct: 61 RSSGEQAGRGWGSPPLTTQLSPTGAKCKCKFGQKSG 96
>gi|27764904 FXYD domain containing ion transport regulator 4 [Homo
sapiens]
Length = 89
Score = 89.4 bits (220), Expect = 1e-18
Identities = 48/87 (55%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 58 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSA 116
M++VTL LL+ LAG L+AND +K+ PFYYDW +LQ+ GLIC G+L GI V+S
Sbjct: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLQLSGLICGGLLAIAGIAAVLSG 59
Query: 117 KCKCKFGQKS-GHHPGETPPLITPGSA 142
KCKCK QK P + PLITPGSA
Sbjct: 60 KCKCKSSQKQHSPVPEKAIPLITPGSA 86
>gi|209862815 FXYD domain containing ion transport regulator 3
isoform 5 precursor [Homo sapiens]
Length = 61
Score = 68.6 bits (166), Expect = 2e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 89
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
>gi|209862813 FXYD domain containing ion transport regulator 3
isoform 5 precursor [Homo sapiens]
Length = 61
Score = 68.6 bits (166), Expect = 2e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 89
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
>gi|11612672 phospholemman precursor [Homo sapiens]
Length = 92
Score = 64.3 bits (155), Expect = 3e-11
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 65 LLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQ 124
+LVF G + + ++ PF YD+ SLQ+GGL+ AG+L +GI+IV+S +C+CKF Q
Sbjct: 7 ILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCKFNQ 66
Query: 125 K 125
+
Sbjct: 67 Q 67
>gi|11612670 phospholemman precursor [Homo sapiens]
Length = 92
Score = 64.3 bits (155), Expect = 3e-11
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 65 LLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQ 124
+LVF G + + ++ PF YD+ SLQ+GGL+ AG+L +GI+IV+S +C+CKF Q
Sbjct: 7 ILVFCVGLLTMAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCKFNQ 66
Query: 125 K 125
+
Sbjct: 67 Q 67
>gi|169194724 PREDICTED: similar to FXYD domain-containing ion
transport regulator 6 [Homo sapiens]
Length = 95
Score = 63.2 bits (152), Expect = 7e-11
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 117
M+ V + L LA + DA + E + PF+YD+ +L++ GL+CA VL ++GI++++ +
Sbjct: 1 MEVVLIFLCSLLAHIVLADAVEREKQIDPFHYDYQTLRIRGLVCAVVLFSIGILLILGCR 60
Query: 118 CKCKFGQKSGHHPGE 132
CKC F QK PGE
Sbjct: 61 CKCSFNQKP-RTPGE 74
>gi|169194767 PREDICTED: similar to FXYD domain-containing ion
transport regulator 6 [Homo sapiens]
Length = 95
Score = 63.2 bits (152), Expect = 7e-11
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 117
M+ V + L LA + DA + E + PF+YD+ +L++ GL+CA VL ++GI++++ +
Sbjct: 1 MEVVLIFLCSLLAHIVLADAVEREKQIDPFHYDYQTLRIRGLVCAVVLFSIGILLILGCR 60
Query: 118 CKCKFGQKSGHHPGE 132
CKC F QK PGE
Sbjct: 61 CKCSFNQKP-RTPGE 74
>gi|169190389 PREDICTED: similar to FXYD domain-containing ion
transport regulator 6 [Homo sapiens]
Length = 95
Score = 63.2 bits (152), Expect = 7e-11
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 117
M+ V + L LA + DA + E + PF+YD+ +L++ GL+CA VL ++GI++++ +
Sbjct: 1 MEVVLIFLCSLLAHIVLADAVEREKQIDPFHYDYQTLRIRGLVCAVVLFSIGILLILGCR 60
Query: 118 CKCKFGQKSGHHPGE 132
CKC F QK PGE
Sbjct: 61 CKCSFNQKP-RTPGE 74
>gi|11612655 FXYD domain-containing ion transport regulator 6 [Homo
sapiens]
Length = 95
Score = 61.2 bits (147), Expect = 3e-10
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAK 117
M+ V + L LA + A + E + PF+YD+ +L++GGL+ A VL ++GI++++S +
Sbjct: 1 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60
Query: 118 CKCKFGQK---SGHHPGETPPLITPGSAQ 143
CKC F QK G + LIT + +
Sbjct: 61 CKCSFNQKPRAPGDEEAQVENLITANATE 89
>gi|11612659 FXYD domain-containing ion transport regulator 7 [Homo
sapiens]
Length = 80
Score = 43.5 bits (101), Expect = 6e-05
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 82 DKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSGHHP 130
++ PFYYD++++Q G+ A +L +GI+IV+S K KC+ P
Sbjct: 13 EEPDPFYYDYNTVQTVGMTLATILFLLGILIVISKKVKCRKADSRSESP 61
>gi|11125764 FXYD domain-containing ion transport regulator 2
isoform 2 [Homo sapiens]
Length = 64
Score = 41.2 bits (95), Expect = 3e-04
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 68 FLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSG 127
+L G P D + PFYYD+ +++ GGLI AG+ +G++I++S + +C G K
Sbjct: 5 YLGGSPKGDVD-------PFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCG-GNKKR 56
Query: 128 HHPGETPP 135
E P
Sbjct: 57 RQINEDEP 64
>gi|47778938 FXYD domain-containing ion transport regulator 5 [Homo
sapiens]
Length = 178
Score = 41.2 bits (95), Expect = 3e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 83 KNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCK 119
++ PF+YD H+L+ GL+ A VL GIII+ S KC+
Sbjct: 131 EDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCR 167
>gi|21618361 FXYD domain-containing ion transport regulator 5 [Homo
sapiens]
Length = 178
Score = 41.2 bits (95), Expect = 3e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 83 KNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCK 119
++ PF+YD H+L+ GL+ A VL GIII+ S KC+
Sbjct: 131 EDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCR 167
>gi|11125766 FXYD domain-containing ion transport regulator 2
isoform 1 [Homo sapiens]
Length = 66
Score = 40.8 bits (94), Expect = 4e-04
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 86 PFYYDWHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQKSGHHPGETPP 135
PFYYD+ +++ GGLI AG+ +G++I++S + +C G K E P
Sbjct: 18 PFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCG-GNKKRRQINEDEP 66
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 31.6 bits (70), Expect = 0.24
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 86 PFYYD--WHSLQVGGLICAGVLCAMGIIIVMSAKCKCKFGQ------KSGH--HPGETPP 135
P+Y+D W ++ +G L+ +L +G++++ + G K+ H HPG PP
Sbjct: 1274 PYYHDEGWVAILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNEPKAAHEYHPGSKPP 1333
Query: 136 LITPGSAQ 143
L T G AQ
Sbjct: 1334 LPTSGPAQ 1341
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 30.0 bits (66), Expect = 0.70
Identities = 19/57 (33%), Positives = 23/57 (40%)
Query: 8 ALQARGGLEEPLERGLRGPSFTQSPLHGAAAAYLSAQRDASLPVPGQRSDMQKVTLG 64
A QA + PL GL+ P Q P A Q P PG S +K+ LG
Sbjct: 624 APQAPPAVSTPLPLGLQQPQAQQPPQAPTPQAAAPPQATTPQPSPGLASSPEKIVLG 680
>gi|29171740 phosphatidic acid phosphatase type 2B [Homo sapiens]
Length = 311
Score = 30.0 bits (66), Expect = 0.70
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 54 QRSDMQKVTLGLL----VFLAGFP--VLDANDLEDKNSPFYYDWHS----LQVGGLICAG 103
+RS ++V L L +F+AG P +++ + ++ + FY + S L+ G I
Sbjct: 27 RRSGSKRVLLICLDLFCLFMAGLPFLIIETSTIKPYHRGFYCNDESIKYPLKTGETINDA 86
Query: 104 VLCAMGIIIVMSA 116
VLCA+GI+I + A
Sbjct: 87 VLCAVGIVIAILA 99
>gi|29171742 phosphatidic acid phosphatase type 2B [Homo sapiens]
Length = 311
Score = 30.0 bits (66), Expect = 0.70
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 54 QRSDMQKVTLGLL----VFLAGFP--VLDANDLEDKNSPFYYDWHS----LQVGGLICAG 103
+RS ++V L L +F+AG P +++ + ++ + FY + S L+ G I
Sbjct: 27 RRSGSKRVLLICLDLFCLFMAGLPFLIIETSTIKPYHRGFYCNDESIKYPLKTGETINDA 86
Query: 104 VLCAMGIIIVMSA 116
VLCA+GI+I + A
Sbjct: 87 VLCAVGIVIAILA 99
>gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo
sapiens]
Length = 833
Score = 29.6 bits (65), Expect = 0.91
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 1 MGRGYSGALQARGGLEEPLERGLRGPSFTQSPLHGAAAAYLSAQRDASLPVPGQRSD 57
+GR +GA+Q G+ P+ +R FT++ L G+A LS R + P+ ++ D
Sbjct: 88 IGRPMTGAIQ--DGVTRPMT-AVRAAGFTKAALRGSAFDPLSQSRGPASPLEAKKKD 141
>gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo
sapiens]
Length = 824
Score = 29.6 bits (65), Expect = 0.91
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 1 MGRGYSGALQARGGLEEPLERGLRGPSFTQSPLHGAAAAYLSAQRDASLPVPGQRSD 57
+GR +GA+Q G+ P+ +R FT++ L G+A LS R + P+ ++ D
Sbjct: 79 IGRPMTGAIQ--DGVTRPMT-AVRAAGFTKAALRGSAFDPLSQSRGPASPLEAKKKD 132
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 29.3 bits (64), Expect = 1.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 25 GPSFTQSPLHGAAAAYLSAQRDASLPVPGQRSDM 58
G S + SP+HG A Q A P+ RSD+
Sbjct: 411 GSSLSSSPMHGPPVAEAKRQEPAQPPISDARSDL 444
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 28.5 bits (62), Expect = 2.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 2 GRGYSGALQARGGLEEPLERGLRGPS 27
G G +GAL +G L P + GLRGPS
Sbjct: 437 GPGVAGALGQKGDLGLPGQPGLRGPS 462
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 28.1 bits (61), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 9 LQARGGLEEPLERGLRGPSFTQ 30
L+ +GG EE L+ +GP FTQ
Sbjct: 223 LEGQGGFEEHLQEAAQGPHFTQ 244
>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
Length = 289
Score = 27.3 bits (59), Expect = 4.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 3 RGYSGALQARGGLE-----EPLERGLRGPSFTQSPLHGAAAAYLSAQRDASLPVPG 53
+GY+G+ GG++ P+ L GP T SP+ A Q ASL G
Sbjct: 187 QGYAGSTSYFGGMDCGSYLTPMHHQLPGPGATLSPMGTNAVTSHLNQSPASLSTQG 242
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,435,343
Number of Sequences: 37866
Number of extensions: 286351
Number of successful extensions: 761
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 40
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.