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Search of human proteins with 209862760
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209862760 NADH dehydrogenase (ubiquinone) 1 beta subcomplex,
11, 17.3kDa isoform 2 [Homo sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209862760 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, ... 315 7e-87
gi|20127561 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1... 307 2e-84
gi|27734719 solute carrier family 19, member 2 [Homo sapiens] 32 0.21
gi|54112394 calcium channel, voltage-dependent, alpha 2/delta su... 32 0.21
gi|54112392 calcium channel, voltage-dependent, alpha 2/delta su... 32 0.21
gi|54112390 calcium channel, voltage-dependent, alpha 2/delta su... 32 0.28
gi|4507005 solute carrier family 22 member 5 [Homo sapiens] 30 0.62
gi|21362092 1-acylglycerol-3-phosphate O-acyltransferase 9 [Homo... 30 0.81
gi|58761508 midnolin [Homo sapiens] 30 0.81
gi|30520329 lysophosphatidic acid acyltransferase zeta precursor... 30 1.1
gi|149944548 neurobeachin-like 2 [Homo sapiens] 30 1.1
gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo ... 30 1.1
gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo s... 30 1.1
gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens] 29 1.8
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 28 2.3
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens] 28 2.3
gi|189303549 speedy homolog E4 [Homo sapiens] 28 3.1
gi|18426913 drebrin 1 isoform b [Homo sapiens] 28 3.1
gi|18426915 drebrin 1 isoform a [Homo sapiens] 28 3.1
gi|4502873 chloride channel 6 isoform ClC-6a [Homo sapiens] 28 3.1
gi|12025673 chloride channel 6 isoform ClC-6d [Homo sapiens] 28 3.1
gi|12025668 chloride channel 6 isoform ClC-6b [Homo sapiens] 28 3.1
gi|12025671 chloride channel 6 isoform ClC-6c [Homo sapiens] 28 3.1
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 28 3.1
gi|38505159 transcription factor-like 5 protein [Homo sapiens] 28 3.1
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 28 3.1
gi|4506455 reticulocalbin 1 precursor [Homo sapiens] 28 4.0
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 27 5.2
gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens] 27 5.2
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 27 5.2
>gi|209862760 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11,
17.3kDa isoform 2 [Homo sapiens]
Length = 153
Score = 315 bits (808), Expect = 7e-87
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE 60
MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE
Sbjct: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE 60
Query: 61 PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYRMKEWSRR 120
PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYRMKEWSRR
Sbjct: 61 PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYRMKEWSRR 120
Query: 121 EAERLVKYREANGLPIMESNCFDPSKIQLPEDE 153
EAERLVKYREANGLPIMESNCFDPSKIQLPEDE
Sbjct: 121 EAERLVKYREANGLPIMESNCFDPSKIQLPEDE 153
>gi|20127561 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11,
17.3kDa isoform 1 [Homo sapiens]
Length = 163
Score = 307 bits (787), Expect = 2e-84
Identities = 153/163 (93%), Positives = 153/163 (93%), Gaps = 10/163 (6%)
Query: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE 60
MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE
Sbjct: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE 60
Query: 61 PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYR------- 113
PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYR
Sbjct: 61 PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYRCTGCPRA 120
Query: 114 ---MKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE 153
MKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE
Sbjct: 121 WDGMKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE 163
>gi|27734719 solute carrier family 19, member 2 [Homo sapiens]
Length = 497
Score = 32.0 bits (71), Expect = 0.21
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 7 GLSARRLLAAAATRGLPAARVRWESSFSRTVV--APSAVAGKRPPEP-TTPWQEDPEPED 63
G +RR AAAAT L ARVR E F T + A A RP EP TP+ P D
Sbjct: 5 GPVSRRAAAAAATVLLRTARVRRECWFLPTALLCAYGFFASLRPSEPFLTPYLLGP---D 61
Query: 64 ENLYEKNPDSHGYDKDPVLDVWNMR-LVFFFGVSIILVLGSTFVAYLP 110
+NL E+ + Y VW LV F V L + ++ Y P
Sbjct: 62 KNLTEREVFNEIY------PVWTYSYLVLLFPV----FLATDYLRYKP 99
>gi|54112394 calcium channel, voltage-dependent, alpha 2/delta
subunit 2 isoform b [Homo sapiens]
Length = 1143
Score = 32.0 bits (71), Expect = 0.21
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 48 PPEPTTPWQEDPEPEDENLYEKNPDSHGY 76
P + W E+PEP + + Y ++ D+HGY
Sbjct: 764 PNKAAEDWTENPEPFNASFYRRSLDNHGY 792
>gi|54112392 calcium channel, voltage-dependent, alpha 2/delta
subunit 2 isoform a [Homo sapiens]
Length = 1145
Score = 32.0 bits (71), Expect = 0.21
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 48 PPEPTTPWQEDPEPEDENLYEKNPDSHGY 76
P + W E+PEP + + Y ++ D+HGY
Sbjct: 764 PNKAAEDWTENPEPFNASFYRRSLDNHGY 792
>gi|54112390 calcium channel, voltage-dependent, alpha 2/delta
subunit 1 [Homo sapiens]
Length = 1091
Score = 31.6 bits (70), Expect = 0.28
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 34 SRTVVAPSAVAGKRPPEPTTPWQEDPEPEDENLYEKNPDSHGY 76
+R VV + P E WQE+PE +++ Y+++ D+ Y
Sbjct: 719 ARFVVTDGGITRVYPKEAGENWQENPETYEDSFYKRSLDNDNY 761
>gi|4507005 solute carrier family 22 member 5 [Homo sapiens]
Length = 557
Score = 30.4 bits (67), Expect = 0.62
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 85 WNMRLVFFFGVSIILVLGSTFVAYLPDYRMKEWSRREAERLV-KYREANGLPIMESNCFD 143
W M LV ++ V F+ P + + + EAE ++ K +ANG+ ++ S FD
Sbjct: 256 WRMLLVALTMPGVLCVALWWFIPESPRWLISQGRFEEAEVIIRKAAKANGI-VVPSTIFD 314
Query: 144 PSKIQ 148
PS++Q
Sbjct: 315 PSELQ 319
>gi|21362092 1-acylglycerol-3-phosphate O-acyltransferase 9 [Homo
sapiens]
Length = 434
Score = 30.0 bits (66), Expect = 0.81
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 92 FFGVSIILVLGSTFVAYLPDYRMKEW 117
F G+S+ LV+G+T V LPD +K W
Sbjct: 165 FIGISL-LVIGTTLVGQLPDSSLKNW 189
>gi|58761508 midnolin [Homo sapiens]
Length = 468
Score = 30.0 bits (66), Expect = 0.81
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPS---AVAGKRPPEPTTPWQE 57
+AA L R +LAAAA AA R + S + V +P + A + PP PT+P
Sbjct: 156 LAAQHAPLQHRHVLAAAAA----AAAARGDPSIASPVSSPCRPVSSAARVPPVPTSPSPA 211
Query: 58 DPEP 61
P P
Sbjct: 212 SPSP 215
>gi|30520329 lysophosphatidic acid acyltransferase zeta precursor
[Homo sapiens]
Length = 456
Score = 29.6 bits (65), Expect = 1.1
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 92 FFGVSIILVLGSTFVAYLPDYRMKEWSRREAERLVKYR 129
F G+S+ LV+G+T V YLP+ R KE+ + L+ YR
Sbjct: 184 FTGISL-LVVGTTVVGYLPNGRFKEFMSKHV-HLMCYR 219
>gi|149944548 neurobeachin-like 2 [Homo sapiens]
Length = 2754
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 22 LPAARVRWESSFSRTVVAPSAVAGKRPP----EPTTPWQEDPEPEDEN 65
L A + W+ +R V +A AG PP PT+P P+P E+
Sbjct: 1277 LLARQAGWQDVLTRLYVLEAATAGSPPPSSPESPTSPKPAPPKPPTES 1324
>gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo
sapiens]
Length = 706
Score = 29.6 bits (65), Expect = 1.1
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 3 AGLFGLSARRLLAA----AATRGLPAA----RVRWESSFSRTVVAPSAVAGKRPPE---- 50
AGL G SA LLA AA L AA R E+ SR APS A PPE
Sbjct: 157 AGLVGGSATGLLALSGALAAQAQLAAAVKEDRAGVEAEGSRVERAPSRSASPSPPESLVE 216
Query: 51 ---PTTPW----QEDPEPEDENLYEKNPDSHGYD 77
P+ P Q E E YE + D Y+
Sbjct: 217 EERPSGPGGGGKQRADEKEPSGPYESDEDKSDYN 250
>gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo
sapiens]
Length = 743
Score = 29.6 bits (65), Expect = 1.1
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 3 AGLFGLSARRLLAA----AATRGLPAA----RVRWESSFSRTVVAPSAVAGKRPPE---- 50
AGL G SA LLA AA L AA R E+ SR APS A PPE
Sbjct: 143 AGLVGGSATGLLALSGALAAQAQLAAAVKEDRAGVEAEGSRVERAPSRSASPSPPESLVE 202
Query: 51 ---PTTPW----QEDPEPEDENLYEKNPDSHGYD 77
P+ P Q E E YE + D Y+
Sbjct: 203 EERPSGPGGGGKQRADEKEPSGPYESDEDKSDYN 236
>gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens]
Length = 4024
Score = 28.9 bits (63), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 75 GYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYR 113
G + DP+L+ ++ F G S + LG + + Y PD+R
Sbjct: 3040 GEELDPILEPLLLKQTFKQGGSTCIRLGDSTIEYAPDFR 3078
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 28.5 bits (62), Expect = 2.3
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 2 AAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEP 61
AA L+ + LA T P A + S V S AG+ PEP+ P +ED E
Sbjct: 951 AANKMPLAQKPALAPKPTSQTPPASPLSKLSRPYLVELLSRRAGRPDPEPSEPSKEDQES 1010
Query: 62 ED 63
D
Sbjct: 1011 SD 1012
>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
Length = 842
Score = 28.5 bits (62), Expect = 2.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 27 VRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEPEDENLYEKNPDSHG 75
++W S+F R + S V + P P Q P E + L K PD G
Sbjct: 572 LKWHSAFFRKQMGTSLVHSLKKPHKRDPLQNSPGSEGKTLL-KQPDLCG 619
>gi|189303549 speedy homolog E4 [Homo sapiens]
Length = 237
Score = 28.1 bits (61), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 34 SRTVVAPSAVAGKRPPEPTTPWQEDPEPEDENL 66
S TV +P V P P+ PW DP P+ ++L
Sbjct: 18 STTVRSPEVVVDDEVPGPSAPW-IDPSPQPQSL 49
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 28.1 bits (61), Expect = 3.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 39 APSAVAGKRPPE-PTTPWQEDPEPEDENLYE 68
AP V +PPE T W DP PE+E +E
Sbjct: 618 APPPVFYNKPPEIDITCWDADPVPEEEEGFE 648
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 28.1 bits (61), Expect = 3.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 39 APSAVAGKRPPE-PTTPWQEDPEPEDENLYE 68
AP V +PPE T W DP PE+E +E
Sbjct: 616 APPPVFYNKPPEIDITCWDADPVPEEEEGFE 646
>gi|4502873 chloride channel 6 isoform ClC-6a [Homo sapiens]
Length = 869
Score = 28.1 bits (61), Expect = 3.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 47 RPPEPTTPWQEDPEPEDENLYEKNPDSHGYDK---DPVLDV 84
R PE T E E EDE L K+ +S YD+ DP L+V
Sbjct: 24 RTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEV 64
>gi|12025673 chloride channel 6 isoform ClC-6d [Homo sapiens]
Length = 308
Score = 28.1 bits (61), Expect = 3.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 47 RPPEPTTPWQEDPEPEDENLYEKNPDSHGYDK---DPVLDV 84
R PE T E E EDE L K+ +S YD+ DP L+V
Sbjct: 24 RTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEV 64
>gi|12025668 chloride channel 6 isoform ClC-6b [Homo sapiens]
Length = 320
Score = 28.1 bits (61), Expect = 3.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 47 RPPEPTTPWQEDPEPEDENLYEKNPDSHGYDK---DPVLDV 84
R PE T E E EDE L K+ +S YD+ DP L+V
Sbjct: 24 RTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEV 64
>gi|12025671 chloride channel 6 isoform ClC-6c [Homo sapiens]
Length = 353
Score = 28.1 bits (61), Expect = 3.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 47 RPPEPTTPWQEDPEPEDENLYEKNPDSHGYDK---DPVLDV 84
R PE T E E EDE L K+ +S YD+ DP L+V
Sbjct: 24 RTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEV 64
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 28.1 bits (61), Expect = 3.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 12 RLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEP 61
R+ A+ RG P AR S +++ ++ PP+ T +E+P P
Sbjct: 405 RMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRP 454
>gi|38505159 transcription factor-like 5 protein [Homo sapiens]
Length = 500
Score = 28.1 bits (61), Expect = 3.1
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 16 AAATRGLPAARVRWESSF-SRTVVAPSAVAGKRPPEP 51
A R PA RVR E F S P A G PPEP
Sbjct: 174 APEARAKPAVRVRLEDRFNSIPAEPPPAPRGPEPPEP 210
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 28.1 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 39 APSAVAGKRPPEPTTPWQEDPEPEDENLYEKNPDS 73
AP AV + PPEP + DP P + PD+
Sbjct: 13 APPAVVARTPPEPRPSPEGDPSPPPPPMSALVPDT 47
>gi|4506455 reticulocalbin 1 precursor [Homo sapiens]
Length = 331
Score = 27.7 bits (60), Expect = 4.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 7 GLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE----PE 62
GL +LA R P R VV P + G+RPPE +Q D E E
Sbjct: 15 GLLLALVLAPRVLRAKPTVR-------KERVVRPDSELGERPPEDNQSFQYDHEAFLGKE 67
Query: 63 DENLYEK-NPD 72
D +++ PD
Sbjct: 68 DSKTFDQLTPD 78
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 27.3 bits (59), Expect = 5.2
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 31 SSFSRTVVAPSA-----VAGKRPPEPTTPWQEDPEP 61
SSFS VV P A K P PT W D EP
Sbjct: 472 SSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEP 507
>gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens]
Length = 858
Score = 27.3 bits (59), Expect = 5.2
Identities = 22/83 (26%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 10 ARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEP-------- 61
ARR T A VR + + P GKRP P P PE
Sbjct: 193 ARRCERGLKTLESQLASVRRGRKINEDEIPPPVALGKRPLAPQEPANRSPETDPPAPPAL 252
Query: 62 EDENLYEKNPDSHGYDKDPVLDV 84
E +N + G PV D+
Sbjct: 253 ESDNPSQPETSLPGISAQPVSDL 275
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 27.3 bits (59), Expect = 5.2
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 23 PAARVRWESSFSRTVVAPSAVAGKRPPEPTTP 54
PAA + RT VAPSAV P PT P
Sbjct: 2262 PAAAAAMNLASPRTAVAPSAVNLADPRTPTAP 2293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,867,562
Number of Sequences: 37866
Number of extensions: 346626
Number of successful extensions: 1717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1686
Number of HSP's gapped (non-prelim): 62
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.