Guide to the Human Genome
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Name: NDUFB11 Sequence: fasta or formatted (163aa) NCBI GI: 20127561
Description:

NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa isoform 1

Referenced in:

Oxidative Phosphorylation

Other entries for this name:
alt prot [153aa] NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa is...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         16           4
 C cysteine            1.8          3           1
 D aspartate           6.1         10           1
 E glutamate           8.6         14           1
 F phenylalanine       4.3          7           3
 G glycine             6.1         10           1
 H histidine           0.6          1           1
 I isoleucine          2.5          4           2
 K lysine              3.7          6           1
 L leucine             8.6         14           2
 M methionine          2.5          4           1
 N asparagine          3.1          5           1
 P proline             9.2         15           2
 Q glutamine           1.2          2           1
 R arginine            8.6         14           2
 S serine              6.7         11           2
 T threonine           3.7          6           2
 V valine              6.7         11           2
 W tryptophan          3.1          5           1
 Y tyrosine            3.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1... 
NDUFB11               0.890   NADH dehydrogenase (ubiquinone) 1 beta subcomplex, ...
SLC19A2               0.022   solute carrier family 19, member 2 
CACNA2D2              0.022   calcium channel, voltage-dependent, alpha 2/delta su...
CACNA2D2              0.022   calcium channel, voltage-dependent, alpha 2/delta su...
CACNA2D1              0.022   calcium channel, voltage-dependent, alpha 2/delta su...
LAMA2                 0.016   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.016   laminin alpha 2 subunit isoform a precursor 
MIDN                  0.016   midnolin 
NBEAL2                0.016   neurobeachin-like 2 
TLE2                  0.016   transducin-like enhancer protein 2 isoform 2 
TLE2                  0.016   transducin-like enhancer protein 2 isoform 1 
DNAH7                 0.013   dynein, axonemal, heavy chain 7 
KIAA1211              0.009   hypothetical protein LOC57482 
PHF17                 0.009   PHD finger protein 17 long isoform 
SPDYE4                0.009   speedy homolog E4 
DBN1                  0.009   drebrin 1 isoform b 
DBN1                  0.009   drebrin 1 isoform a 
CLCN6                 0.009   chloride channel 6 isoform ClC-6a 
CLCN6                 0.009   chloride channel 6 isoform ClC-6d 
CLCN6                 0.009   chloride channel 6 isoform ClC-6b 
CLCN6                 0.009   chloride channel 6 isoform ClC-6c 
DACT3                 0.009   thymus expressed gene 3-like 
ARMC5                 0.009   armadillo repeat containing 5 isoform b 
TCFL5                 0.009   transcription factor-like 5 protein 
MAP7D1                0.009   MAP7 domain containing 1 
RCN1                  0.009   reticulocalbin 1 precursor 
ALDH16A1              0.006   aldehyde dehydrogenase 16 family, member A1 isoform...
ALDH16A1              0.006   aldehyde dehydrogenase 16 family, member A1 isoform...
DSCAML1               0.006   Down syndrome cell adhesion molecule like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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