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Search of human proteins with 208609990
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208609990 nucleoporin 93kDa [Homo sapiens]
(819 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208609990 nucleoporin 93kDa [Homo sapiens] 1611 0.0
gi|203096856 kinesin family member 7 [Homo sapiens] 39 0.015
gi|4557743 Mediterranean fever protein [Homo sapiens] 36 0.17
gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens] 35 0.22
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 34 0.48
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 34 0.48
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 34 0.48
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 34 0.48
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 34 0.48
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 34 0.48
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 34 0.48
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 34 0.48
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 33 1.1
gi|9789865 eukaryotic translation initiation factor 4E nuclear i... 33 1.1
gi|116256344 novel 58.3 KDA protein isoform 2 [Homo sapiens] 33 1.4
gi|116256342 novel 58.3 KDA protein isoform 1 [Homo sapiens] 33 1.4
gi|38348356 testis expressed 9 [Homo sapiens] 32 2.4
gi|33188443 microfilament and actin filament cross-linker protei... 32 3.1
gi|33188445 microfilament and actin filament cross-linker protei... 32 3.1
gi|225579095 S-phase cyclin A-associated protein in the ER isofo... 31 5.3
gi|18201909 vascular cell adhesion molecule 1 isoform b precurso... 31 5.3
gi|4507875 vascular cell adhesion molecule 1 isoform a precursor... 31 5.3
gi|4507927 wingless-type MMTV integration site family member 2 p... 31 5.3
gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo ... 31 5.3
gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo ... 31 5.3
gi|225579092 S-phase cyclin A-associated protein in the ER isofo... 31 5.3
gi|31657114 armadillo repeat containing 4 [Homo sapiens] 31 5.3
gi|110815815 centlein isoform 1 [Homo sapiens] 30 6.9
gi|20070205 ladinin 1 [Homo sapiens] 30 6.9
gi|116534937 interferon-induced protein with tetratricopeptide r... 30 9.1
>gi|208609990 nucleoporin 93kDa [Homo sapiens]
Length = 819
Score = 1611 bits (4172), Expect = 0.0
Identities = 819/819 (100%), Positives = 819/819 (100%)
Query: 1 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKA 60
MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKA
Sbjct: 1 MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKA 60
Query: 61 SVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKR 120
SVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKR
Sbjct: 61 SVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKR 120
Query: 121 TFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDN 180
TFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDN
Sbjct: 121 TFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDN 180
Query: 181 IEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVLLTPATD 240
IEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVLLTPATD
Sbjct: 181 IEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVLLTPATD 240
Query: 241 ALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIK 300
ALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIK
Sbjct: 241 ALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFGNLHQAQLGGVPGTYQLVRSFLNIK 300
Query: 301 LPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKD 360
LPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKD
Sbjct: 301 LPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAASQVVNRAQHQLGEFKTWFQEYMNSKD 360
Query: 361 RRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQ 420
RRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQ
Sbjct: 361 RRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWLKLNQ 420
Query: 421 VCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAVAFLF 480
VCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAVAFLF
Sbjct: 421 VCFDDDGTSSPQDRLTLSQFQKQLLEDYGESHFTVNQQPFLYFQVLFLTAQFEAAVAFLF 480
Query: 481 RMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCLRRLNFVRLLMLYTRKFE 540
RMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCLRRLNFVRLLMLYTRKFE
Sbjct: 481 RMERLRCHAVHVALVLFELKLLLKSSGQSAQLLSHEPGDPPCLRRLNFVRLLMLYTRKFE 540
Query: 541 STDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDK 600
STDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDK
Sbjct: 541 STDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDK 600
Query: 601 FTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNK 660
FTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNK
Sbjct: 601 FTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNK 660
Query: 661 ERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLV 720
ERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLV
Sbjct: 661 ERLKNMALSIAERYRAQGISANKFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLV 720
Query: 721 PLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSSSRPQRVIED 780
PLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSSSRPQRVIED
Sbjct: 721 PLNQESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSSSRPQRVIED 780
Query: 781 RDSQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN 819
RDSQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN
Sbjct: 781 RDSQLRSQARTLITFAGMIPYRTSGDTNARLVQMEVLMN 819
>gi|203096856 kinesin family member 7 [Homo sapiens]
Length = 1343
Score = 39.3 bits (90), Expect = 0.015
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 8 ELLQQAEQLAAE-TEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGS 66
EL Q+AEQ+ AE +EG +L +E +E+Q AGER R + R A + VL
Sbjct: 747 ELEQEAEQVRAELSEGQRQLRELEG--KELQDAGERSRLQEFRRRVA-AAQSQVQVLKEK 803
Query: 67 RGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAE 126
+ ++RL SLSA + E ++ + + + L E+ R+ M++
Sbjct: 804 K-----QATERLVSLSAQSEKRLQELERNVQLMRQQQGQLQRRLREETEQKRRLEAEMSK 858
Query: 127 EYHRESMLVEWEQVKQRIL 145
HR L + +Q+IL
Sbjct: 859 RQHRVKELELKHEQQQKIL 877
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 35.8 bits (81), Expect = 0.17
Identities = 37/195 (18%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 80 SLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQ 139
SLS + P+++ ++ K +K L + +S + EE S L + E
Sbjct: 399 SLSQEHQGHRVRPIEEVALEHKKKIQKQLEHLKKLRKSGEEQRSYGEE-KAVSFLKQTEA 457
Query: 140 VKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDNIEMAYARQIYIYNEKIVNG 199
+KQR+ L E F ++ E +++ + G+ + I AY ++
Sbjct: 458 LKQRVQRKL----EQVYYFLEQQEHFFVASLEDVGQM-VGQIRKAYDTRV---------- 502
Query: 200 HLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVL----LTPATDALKNRSSVEVRMEFV 255
++ L A + EL+ K W +++ + D+L P + ++ +++ +
Sbjct: 503 --SQDIALLDALIGELEAKECQSEWELLQDIGDILHRAKTVPVPEKWTTPQEIKQKIQLL 560
Query: 256 RQALAYLEQSYKNYT 270
Q ++E+S K ++
Sbjct: 561 HQKSEFVEKSTKYFS 575
>gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]
Length = 1194
Score = 35.4 bits (80), Expect = 0.22
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 724 QESVEERVAAFRNFSDEIRHNLSEVLLATMNILFTQFKRLKGTSPSSSSR--PQRVIEDR 781
+ S+ E +A + DE+ N E LLA M + + +L+G PSS SR P +E R
Sbjct: 459 KNSLSEEIANMKKLQDELLLN-KEQLLAEMERMQMEIDQLRGRPPSSYSRSLPGSALELR 517
Query: 782 DSQLRSQARTLITFAGMIPY 801
SQA TL + A + PY
Sbjct: 518 ----YSQAPTLPSGAHLDPY 533
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 34.3 bits (77), Expect = 0.48
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 11 QQAEQLAAETEGISELPHVERNLQ-EIQQAGERLRSRTLTRTSQETADVKASVLLGSRGL 69
Q A+QLA ET+G ER Q E+ ERL+ R A +A
Sbjct: 2352 QMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRV---AEMSRAQARAEEDAQRFRK 2408
Query: 70 DISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYH 129
I ++L AT E + V+ +IQ + L AI E + E+
Sbjct: 2409 QAEEIGEKLHRTELATQ-EKVTLVQTLEIQRQQSDHDAERLREAIAELERE----KEKLQ 2463
Query: 130 RESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISD 169
+E+ L+ Q+K + T+ E L TQ + S++S+
Sbjct: 2464 QEAKLL---QLKSEEMQTV--QQEQLLQETQALQQSFLSE 2498
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 34.3 bits (77), Expect = 0.48
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 11 QQAEQLAAETEGISELPHVERNLQ-EIQQAGERLRSRTLTRTSQETADVKASVLLGSRGL 69
Q A+QLA ET+G ER Q E+ ERL+ R A +A
Sbjct: 2356 QMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRV---AEMSRAQARAEEDAQRFRK 2412
Query: 70 DISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYH 129
I ++L AT E + V+ +IQ + L AI E + E+
Sbjct: 2413 QAEEIGEKLHRTELATQ-EKVTLVQTLEIQRQQSDHDAERLREAIAELERE----KEKLQ 2467
Query: 130 RESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISD 169
+E+ L+ Q+K + T+ E L TQ + S++S+
Sbjct: 2468 QEAKLL---QLKSEEMQTV--QQEQLLQETQALQQSFLSE 2502
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 34.3 bits (77), Expect = 0.48
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 11 QQAEQLAAETEGISELPHVERNLQ-EIQQAGERLRSRTLTRTSQETADVKASVLLGSRGL 69
Q A+QLA ET+G ER Q E+ ERL+ R A +A
Sbjct: 2352 QMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRV---AEMSRAQARAEEDAQRFRK 2408
Query: 70 DISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYH 129
I ++L AT E + V+ +IQ + L AI E + E+
Sbjct: 2409 QAEEIGEKLHRTELATQ-EKVTLVQTLEIQRQQSDHDAERLREAIAELERE----KEKLQ 2463
Query: 130 RESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISD 169
+E+ L+ Q+K + T+ E L TQ + S++S+
Sbjct: 2464 QEAKLL---QLKSEEMQTV--QQEQLLQETQALQQSFLSE 2498
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 34.3 bits (77), Expect = 0.48
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 11 QQAEQLAAETEGISELPHVERNLQ-EIQQAGERLRSRTLTRTSQETADVKASVLLGSRGL 69
Q A+QLA ET+G ER Q E+ ERL+ R A +A
Sbjct: 2320 QMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRV---AEMSRAQARAEEDAQRFRK 2376
Query: 70 DISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYH 129
I ++L AT E + V+ +IQ + L AI E + E+
Sbjct: 2377 QAEEIGEKLHRTELATQ-EKVTLVQTLEIQRQQSDHDAERLREAIAELERE----KEKLQ 2431
Query: 130 RESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISD 169
+E+ L+ Q+K + T+ E L TQ + S++S+
Sbjct: 2432 QEAKLL---QLKSEEMQTV--QQEQLLQETQALQQSFLSE 2466
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 34.3 bits (77), Expect = 0.48
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 11 QQAEQLAAETEGISELPHVERNLQ-EIQQAGERLRSRTLTRTSQETADVKASVLLGSRGL 69
Q A+QLA ET+G ER Q E+ ERL+ R A +A
Sbjct: 2489 QMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRV---AEMSRAQARAEEDAQRFRK 2545
Query: 70 DISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYH 129
I ++L AT E + V+ +IQ + L AI E + E+
Sbjct: 2546 QAEEIGEKLHRTELATQ-EKVTLVQTLEIQRQQSDHDAERLREAIAELERE----KEKLQ 2600
Query: 130 RESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISD 169
+E+ L+ Q+K + T+ E L TQ + S++S+
Sbjct: 2601 QEAKLL---QLKSEEMQTV--QQEQLLQETQALQQSFLSE 2635
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 34.3 bits (77), Expect = 0.48
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 11 QQAEQLAAETEGISELPHVERNLQ-EIQQAGERLRSRTLTRTSQETADVKASVLLGSRGL 69
Q A+QLA ET+G ER Q E+ ERL+ R A +A
Sbjct: 2330 QMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRV---AEMSRAQARAEEDAQRFRK 2386
Query: 70 DISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYH 129
I ++L AT E + V+ +IQ + L AI E + E+
Sbjct: 2387 QAEEIGEKLHRTELATQ-EKVTLVQTLEIQRQQSDHDAERLREAIAELERE----KEKLQ 2441
Query: 130 RESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISD 169
+E+ L+ Q+K + T+ E L TQ + S++S+
Sbjct: 2442 QEAKLL---QLKSEEMQTV--QQEQLLQETQALQQSFLSE 2476
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 34.3 bits (77), Expect = 0.48
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 11 QQAEQLAAETEGISELPHVERNLQ-EIQQAGERLRSRTLTRTSQETADVKASVLLGSRGL 69
Q A+QLA ET+G ER Q E+ ERL+ R A +A
Sbjct: 2338 QMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRV---AEMSRAQARAEEDAQRFRK 2394
Query: 70 DISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYH 129
I ++L AT E + V+ +IQ + L AI E + E+
Sbjct: 2395 QAEEIGEKLHRTELATQ-EKVTLVQTLEIQRQQSDHDAERLREAIAELERE----KEKLQ 2449
Query: 130 RESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISD 169
+E+ L+ Q+K + T+ E L TQ + S++S+
Sbjct: 2450 QEAKLL---QLKSEEMQTV--QQEQLLQETQALQQSFLSE 2484
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 34.3 bits (77), Expect = 0.48
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 11 QQAEQLAAETEGISELPHVERNLQ-EIQQAGERLRSRTLTRTSQETADVKASVLLGSRGL 69
Q A+QLA ET+G ER Q E+ ERL+ R A +A
Sbjct: 2379 QMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRV---AEMSRAQARAEEDAQRFRK 2435
Query: 70 DISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYH 129
I ++L AT E + V+ +IQ + L AI E + E+
Sbjct: 2436 QAEEIGEKLHRTELATQ-EKVTLVQTLEIQRQQSDHDAERLREAIAELERE----KEKLQ 2490
Query: 130 RESMLVEWEQVKQRILHTLLASGEDALDFTQESEPSYISD 169
+E+ L+ Q+K + T+ E L TQ + S++S+
Sbjct: 2491 QEAKLL---QLKSEEMQTV--QQEQLLQETQALQQSFLSE 2525
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 33.1 bits (74), Expect = 1.1
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 571 SELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAK--L 628
SEL + + ++ L K+E + + T + + +A + K +EA + L
Sbjct: 949 SELKKDIDDLELTLAKVEKEKHATENKVKNLTEELSGLDETIAKLTREKKALQEAHQQAL 1008
Query: 629 YDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYR 675
DL DKV L NK S + Q+ +S+ E+ K + + + R
Sbjct: 1009 DDLQAEEDKVNSL-NKTKSKLEQQVEDLESSLEQEKKLRVDLERNKR 1054
>gi|9789865 eukaryotic translation initiation factor 4E nuclear
import factor 1 [Homo sapiens]
Length = 985
Score = 33.1 bits (74), Expect = 1.1
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 612 VASVAENKGLFEEAAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALS 669
+ S +N G + L D A+N +LE++ K + P +S+ +NKE+LK + S
Sbjct: 372 ILSPGQNSGNYFAPIPLEDHAENKVDILEMLQKAKVDLKPLLSSLSANKEKLKESSHS 429
>gi|116256344 novel 58.3 KDA protein isoform 2 [Homo sapiens]
Length = 502
Score = 32.7 bits (73), Expect = 1.4
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 357 NSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWL 416
+ KD P T +K+ A++N DP + A Y R D D + T+D L L
Sbjct: 406 HQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDEL-L 464
Query: 417 KLNQVCFDDDGTSSPQDRLTLSQFQK 442
L + +D S+ + + L QF K
Sbjct: 465 NLLKTLDEDSKLSAKEKKKLLGQFYK 490
>gi|116256342 novel 58.3 KDA protein isoform 1 [Homo sapiens]
Length = 511
Score = 32.7 bits (73), Expect = 1.4
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 357 NSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYCIIGRCDVTDNQSEVADKTEDYLWL 416
+ KD P T +K+ A++N DP + A Y R D D + T+D L L
Sbjct: 415 HQKDVFKIPGTLHKIVSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDEL-L 473
Query: 417 KLNQVCFDDDGTSSPQDRLTLSQFQK 442
L + +D S+ + + L QF K
Sbjct: 474 NLLKTLDEDSKLSAKEKKKLLGQFYK 499
>gi|38348356 testis expressed 9 [Homo sapiens]
Length = 391
Score = 32.0 bits (71), Expect = 2.4
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 586 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYD-LAKNADKV-LELMN 643
+++N S+ + F + I + + V + K LFEEA K YD L + V EL N
Sbjct: 221 EIQNLKSQVKNFEEDFMRQQRTINMQQSQVEKYKTLFEEANKKYDGLQQQLSSVERELEN 280
Query: 644 KLLSPVVPQISAPQSNKERLKNMALSIAERYRAQ 677
K + Q ++ QS E N AL AE+Y+ +
Sbjct: 281 K--RRLQKQAASSQSATEVRLNRALEEAEKYKLE 312
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 31.6 bits (70), Expect = 3.1
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETA--------- 56
F +L++ ++ ETEG + +E+++ E L+S S+ T
Sbjct: 2767 FRKLVRTFQKWLKETEGSIPPTETSMSAKELEKQIEHLKSLLDDWASKGTLVEEINCKGT 2826
Query: 57 -------DVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNA 109
++ A G G + + + S++ T + L ++ LK EK
Sbjct: 2827 SLENLIMEITAPDSQGKTGSILPSVGSSVGSVNGYHTCKDLTEIQCDMSDVNLKYEKLGG 2886
Query: 110 LLSAIEESRKRTFGMAEEYHRE-SMLVEWEQVKQRILHTL 148
+L +ES + EE H+E + +++W + K+ +L ++
Sbjct: 2887 VLHERQESLQAILNRMEEVHKEANSVLQWLESKEEVLKSM 2926
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 31.6 bits (70), Expect = 3.1
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETA--------- 56
F +L++ ++ ETEG + +E+++ E L+S S+ T
Sbjct: 2265 FRKLVRTFQKWLKETEGSIPPTETSMSAKELEKQIEHLKSLLDDWASKGTLVEEINCKGT 2324
Query: 57 -------DVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNA 109
++ A G G + + + S++ T + L ++ LK EK
Sbjct: 2325 SLENLIMEITAPDSQGKTGSILPSVGSSVGSVNGYHTCKDLTEIQCDMSDVNLKYEKLGG 2384
Query: 110 LLSAIEESRKRTFGMAEEYHRE-SMLVEWEQVKQRILHTL 148
+L +ES + EE H+E + +++W + K+ +L ++
Sbjct: 2385 VLHERQESLQAILNRMEEVHKEANSVLQWLESKEEVLKSM 2424
>gi|225579095 S-phase cyclin A-associated protein in the ER isoform
b [Homo sapiens]
Length = 1154
Score = 30.8 bits (68), Expect = 5.3
Identities = 50/260 (19%), Positives = 101/260 (38%), Gaps = 28/260 (10%)
Query: 23 ISELPHVERNLQEIQQAGERLRSRTLTRTS---------QETADVKASVLLGSRGLDISH 73
+S+L E+ L E+Q+ +R + R + + LL R +
Sbjct: 396 LSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEAR 455
Query: 74 ISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESM 133
I Q+ + A E +D + E+ AL +A +E+ + + H ES+
Sbjct: 456 IEQQRQEKEKAREDAARERARD-------REERLAALTAAQQEAMEELQKKIQLKHDESI 508
Query: 134 LVEWEQVKQRILHTL-LASGEDALDFTQESEPSYISDVGPPGRSSLDNI-EMAYARQIYI 191
EQ++QR L+SG A Y + P R ++ + + ++Y+
Sbjct: 509 RRHMEQIEQRKEKAAELSSGRHA-------NTDYAPKLTPYERKKQCSLCNVLISSEVYL 561
Query: 192 YNEKIVNGHLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVLL--TPATDALKNRSSVE 249
++ H Q + EL D+ + + ++ K + D+++ T +ALK+ +
Sbjct: 562 FSHVKGRKHQQAVRENTSIQGRELSDEEVEHL-SLKKYIIDIVVESTAPAEALKDGEERQ 620
Query: 250 VRMEFVRQALAYLEQSYKNY 269
+ ++ A + K Y
Sbjct: 621 KNKKKAKKIKARMNFRAKEY 640
>gi|18201909 vascular cell adhesion molecule 1 isoform b precursor
[Homo sapiens]
Length = 647
Score = 30.8 bits (68), Expect = 5.3
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 78 LESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEW 137
+E L T E +E ++DTD++ + + IE++ K A + H + M E+
Sbjct: 346 IELLKGETILENIEFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQA-KLHIDDM--EF 402
Query: 138 EQVKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDNIEMAYARQIYIYNEKIV 197
E +++ TL + D T PS I + G ++ + + +++ ++
Sbjct: 403 EPKQRQSTQTLYVNVAPR-DTTVLVSPSSILEEG--SSVNMTCLSQGFPAPKILWSRQLP 459
Query: 198 NGHLQP 203
NG LQP
Sbjct: 460 NGELQP 465
>gi|4507875 vascular cell adhesion molecule 1 isoform a precursor
[Homo sapiens]
Length = 739
Score = 30.8 bits (68), Expect = 5.3
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 78 LESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEW 137
+E L T E +E ++DTD++ + + IE++ K A + H + M E+
Sbjct: 438 IELLKGETILENIEFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQA-KLHIDDM--EF 494
Query: 138 EQVKQRILHTLLASGEDALDFTQESEPSYISDVGPPGRSSLDNIEMAYARQIYIYNEKIV 197
E +++ TL + D T PS I + G ++ + + +++ ++
Sbjct: 495 EPKQRQSTQTLYVNVAPR-DTTVLVSPSSILEEG--SSVNMTCLSQGFPAPKILWSRQLP 551
Query: 198 NGHLQP 203
NG LQP
Sbjct: 552 NGELQP 557
>gi|4507927 wingless-type MMTV integration site family member 2
precursor [Homo sapiens]
Length = 360
Score = 30.8 bits (68), Expect = 5.3
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 355 YMNSKDRRLSPATENKLRLHYRRALRNNTDPY-KRAVYC--IIGRCDVTDNQSEVAD--K 409
++++K+R+ A + LH RA R + K+ C + G C + +AD K
Sbjct: 171 FVDAKERKGKDARA-LMNLHNNRAGRKAVKRFLKQECKCHGVSGSCTLRTCWLAMADFRK 229
Query: 410 TEDYLWLKLN---QVCFDDDGT 428
T DYLW K N QV + DGT
Sbjct: 230 TGDYLWRKYNGAIQVVMNQDGT 251
>gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo
sapiens]
Length = 212
Score = 30.8 bits (68), Expect = 5.3
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 513 LSHEPGDPPCLRRLNFVRLLMLYTRKFESTDPR-EALQYFYFL 554
+SH P P L R F L +T E+TDPR EA Q+ FL
Sbjct: 29 VSHGPAVAPNLPRTGFASPLCTHTPVHETTDPRKEAAQHEVFL 71
>gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo
sapiens]
Length = 212
Score = 30.8 bits (68), Expect = 5.3
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 513 LSHEPGDPPCLRRLNFVRLLMLYTRKFESTDPR-EALQYFYFL 554
+SH P P L R F L +T E+TDPR EA Q+ FL
Sbjct: 29 VSHGPAVAPNLPRTGFASPLCTHTPVHETTDPRKEAAQHEVFL 71
>gi|225579092 S-phase cyclin A-associated protein in the ER isoform
a [Homo sapiens]
Length = 1400
Score = 30.8 bits (68), Expect = 5.3
Identities = 50/260 (19%), Positives = 101/260 (38%), Gaps = 28/260 (10%)
Query: 23 ISELPHVERNLQEIQQAGERLRSRTLTRTS---------QETADVKASVLLGSRGLDISH 73
+S+L E+ L E+Q+ +R + R + + LL R +
Sbjct: 642 LSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQARVEELLMKRKEQEAR 701
Query: 74 ISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESM 133
I Q+ + A E +D + E+ AL +A +E+ + + H ES+
Sbjct: 702 IEQQRQEKEKAREDAARERARD-------REERLAALTAAQQEAMEELQKKIQLKHDESI 754
Query: 134 LVEWEQVKQRILHTL-LASGEDALDFTQESEPSYISDVGPPGRSSLDNI-EMAYARQIYI 191
EQ++QR L+SG A Y + P R ++ + + ++Y+
Sbjct: 755 RRHMEQIEQRKEKAAELSSGRHA-------NTDYAPKLTPYERKKQCSLCNVLISSEVYL 807
Query: 192 YNEKIVNGHLQPNLVDLCASVAELDDKSISDMWTMVKQMTDVLL--TPATDALKNRSSVE 249
++ H Q + EL D+ + + ++ K + D+++ T +ALK+ +
Sbjct: 808 FSHVKGRKHQQAVRENTSIQGRELSDEEVEHL-SLKKYIIDIVVESTAPAEALKDGEERQ 866
Query: 250 VRMEFVRQALAYLEQSYKNY 269
+ ++ A + K Y
Sbjct: 867 KNKKKAKKIKARMNFRAKEY 886
>gi|31657114 armadillo repeat containing 4 [Homo sapiens]
Length = 1044
Score = 30.8 bits (68), Expect = 5.3
Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 48 LTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKD 107
+TR +++K + + + LD+ ++ L+ +S + P+ KD ++ + +
Sbjct: 157 ITRDDDPESEIKMKIAMLLKQLDLHLLNHSLKHISLEISLSPMTVKKDIELLKRFSGKGN 216
Query: 108 NALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLL 149
+L +IE + E+ W Q++ I + L+
Sbjct: 217 QTVLESIE------YTSDYEFSNGCRAPPWRQIRGEICYVLV 252
>gi|110815815 centlein isoform 1 [Homo sapiens]
Length = 1406
Score = 30.4 bits (67), Expect = 6.9
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 93 VKDTDIQGFLKNEKDNALLSAIE------------ESRKRTFGMAEEY--HRESMLVEWE 138
V + D Q L+N++D +I E+ K M + + + L++ E
Sbjct: 357 VLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQKE 416
Query: 139 QVKQRILHTLLASGEDALDFTQESEPSYISDV-GPPGRSSLDNIEMAYARQIYIYNE--K 195
Q ++ L S L QES+P Y + V P SSL+ + ++ +I E K
Sbjct: 417 QENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLETLMVSQKSEIEYLQEKLK 476
Query: 196 IVNGHLQPNL 205
I N L N+
Sbjct: 477 IANEKLSENI 486
>gi|20070205 ladinin 1 [Homo sapiens]
Length = 517
Score = 30.4 bits (67), Expect = 6.9
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 34 QEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPV 93
+E Q+ R R R L+ T+ + A L G + S+RL S+ A +PL P
Sbjct: 23 EEEQERERRRRHRNLSSTTDDEAP-----RLSQNGDRQASASERLPSVEEAEVPKPLPPA 77
Query: 94 ---KDTDIQGFLKNEKD 107
+D DIQ L+ ++
Sbjct: 78 SKDEDEDIQSILRTRQE 94
>gi|116534937 interferon-induced protein with tetratricopeptide
repeats 1 isoform 2 [Homo sapiens]
Length = 478
Score = 30.0 bits (66), Expect = 9.1
Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 586 KLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEEAAKLYDLAKNADKVLELMNKL 645
KL+++G G K I +A+++ +F AAK Y + DK LEL+ K
Sbjct: 226 KLQDEGQEAEG--------EKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKA 277
Query: 646 LSPVVPQISAPQSNKERLKNMALSIAERYRAQGISAN-----KFVDSTFYLLLDLITFFD 700
L + K + I E + Q N K + S + +
Sbjct: 278 LQETPTSVLLHHQIGLCYKAQMIQIKEATKGQPRGQNREKLDKMIRSAIFHFESAVEKKP 337
Query: 701 EYHSGHIDRAFDIIE 715
+ H+D A IE
Sbjct: 338 TFEVAHLDLARMYIE 352
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,396,771
Number of Sequences: 37866
Number of extensions: 1208652
Number of successful extensions: 3539
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 3496
Number of HSP's gapped (non-prelim): 77
length of query: 819
length of database: 18,247,518
effective HSP length: 111
effective length of query: 708
effective length of database: 14,044,392
effective search space: 9943429536
effective search space used: 9943429536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.