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Search of human proteins with 208431838
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208431838 lymphocyte antigen 6 complex, locus H isoform a
[Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Ho... 299 6e-82
gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Ho... 299 6e-82
gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Ho... 299 6e-82
gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens] 58 2e-09
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens] 58 2e-09
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 47 4e-06
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 47 4e-06
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 47 4e-06
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens] 47 7e-06
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens] 44 6e-05
gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo ... 43 1e-04
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 40 5e-04
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 36 0.009
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 36 0.009
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 36 0.009
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens] 36 0.012
gi|9966907 ARS component B precursor [Homo sapiens] 34 0.034
gi|24041035 notch 2 preproprotein [Homo sapiens] 30 0.49
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 30 0.49
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 30 0.49
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 30 0.49
gi|126012573 low density lipoprotein-related protein 2 [Homo sap... 30 0.49
gi|54873613 agrin [Homo sapiens] 30 0.65
gi|31563503 activity-dependent neuroprotector [Homo sapiens] 30 0.65
gi|12229217 activity-dependent neuroprotector [Homo sapiens] 30 0.65
gi|5032115 sprouty 2 [Homo sapiens] 30 0.84
gi|6912534 BMP and activin membrane-bound inhibitor precursor [H... 29 1.4
gi|20336300 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 [Hom... 28 1.9
gi|30794264 glycosylphosphatidylinositol anchored high density l... 28 2.5
gi|148727298 keratin associated protein 10-6 [Homo sapiens] 28 2.5
>gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 299 bits (765), Expect = 6e-82
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 60
MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP
Sbjct: 22 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 81
Query: 61 SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 120
SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP
Sbjct: 82 SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 141
Query: 121 WALAGGLLLSLGPALLWAGP 140
WALAGGLLLSLGPALLWAGP
Sbjct: 142 WALAGGLLLSLGPALLWAGP 161
>gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Homo
sapiens]
Length = 140
Score = 299 bits (765), Expect = 6e-82
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 60
MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP
Sbjct: 1 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 60
Query: 61 SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 120
SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP
Sbjct: 61 SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 120
Query: 121 WALAGGLLLSLGPALLWAGP 140
WALAGGLLLSLGPALLWAGP
Sbjct: 121 WALAGGLLLSLGPALLWAGP 140
>gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 299 bits (765), Expect = 6e-82
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 60
MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP
Sbjct: 22 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 81
Query: 61 SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 120
SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP
Sbjct: 82 SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 141
Query: 121 WALAGGLLLSLGPALLWAGP 140
WALAGGLLLSLGPALLWAGP
Sbjct: 142 WALAGGLLLSLGPALLWAGP 161
>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 58.2 bits (139), Expect = 2e-09
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 13 LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 69
LLA LL A L C C ++ +C P C D C +V + + HS+
Sbjct: 8 LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
Query: 70 NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 126
+K C+ +C + +N G+ + + CC+ LCN +A G S L G
Sbjct: 68 SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
Query: 127 LLLSLGPALLWAGP 140
LLLSL PALL GP
Sbjct: 118 LLLSLLPALLRFGP 131
>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 58.2 bits (139), Expect = 2e-09
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 13 LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 69
LLA LL A L C C ++ +C P C D C +V + + HS+
Sbjct: 8 LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
Query: 70 NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 126
+K C+ +C + +N G+ + + CC+ LCN +A G S L G
Sbjct: 68 SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
Query: 127 LLLSLGPALLWAGP 140
LLLSL PALL GP
Sbjct: 118 LLLSLLPALLRFGP 131
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 47.4 bits (111), Expect = 4e-06
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 6 MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPK-QCQPSDTVCASVRITDPSSSR 64
M+ L + LL +C+A A L C C HC +C P+D C R T P
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCC---GHEHCESLVECAPTDKYCVITRATSPGGIL 57
Query: 65 KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG--HSPWA 122
V K C+ +C ++S + V CC+ CN +A AG SP
Sbjct: 58 ----VMKSCSPTCP-----------NSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSP-- 100
Query: 123 LAGGLLLSLGPALLWA 138
G L S+ + LWA
Sbjct: 101 --GTLWASIAASQLWA 114
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 47.4 bits (111), Expect = 4e-06
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 6 MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPK-QCQPSDTVCASVRITDPSSSR 64
M+ L + LL +C+A A L C C HC +C P+D C R T P
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCC---GHEHCESLVECAPTDKYCVITRATSPGGIL 57
Query: 65 KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG--HSPWA 122
V K C+ +C ++S + V CC+ CN +A AG SP
Sbjct: 58 ----VMKSCSPTCP-----------NSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSP-- 100
Query: 123 LAGGLLLSLGPALLWA 138
G L S+ + LWA
Sbjct: 101 --GTLWASIAASQLWA 114
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 47.4 bits (111), Expect = 4e-06
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 6 MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPK-QCQPSDTVCASVRITDPSSSR 64
M+ L + LL +C+A A L C C HC +C P+D C R T P
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCC---GHEHCESLVECAPTDKYCVITRATSPGGIL 57
Query: 65 KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG--HSPWA 122
V K C+ +C ++S + V CC+ CN +A AG SP
Sbjct: 58 ----VMKSCSPTCP-----------NSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSP-- 100
Query: 123 LAGGLLLSLGPALLWA 138
G L S+ + LWA
Sbjct: 101 --GTLWASIAASQLWA 114
>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
Length = 128
Score = 46.6 bits (109), Expect = 7e-06
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 11 LALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVN 70
L L A+ + + PA L C CT ++N H C S C + +P + + V
Sbjct: 6 LLLAALAVATGPALTLRCHVCTSSSNCKHSV--VCPASSRFCKTTNTVEP---LRGNLVK 60
Query: 71 KMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAA-GAGHSPWALAGGLLL 129
K CA SC S L G ++SG CC++DLCN A + ALA L
Sbjct: 61 KDCAESCT------PSYTLQGQVSSG--TSSTQCCQEDLCNEKLHNAAPTRTALAHS-AL 111
Query: 130 SLGPAL 135
SLG AL
Sbjct: 112 SLGLAL 117
>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
Length = 123
Score = 43.5 bits (101), Expect = 6e-05
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 6 MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTP-KQCQPSDTVCASVRITDPSSSR 64
MK + LALL L P L C C ++ C + C C + RI
Sbjct: 1 MKAVLLALLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRAVGLLT 60
Query: 65 KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALA 124
++K C+ +C + DY +G K ++ CC+ DLCN + P A
Sbjct: 61 V---ISKGCSLNCVDDSQ----DYYVG-------KKNITCCDTDLCNASGAHALQPAAAI 106
Query: 125 GGLLLSLGPALLWAGP 140
LL +LG LLW GP
Sbjct: 107 LALLPALG-LLLW-GP 120
>gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo
sapiens]
Length = 97
Score = 42.7 bits (99), Expect = 1e-04
Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 8 GLGLALLAVL-LCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKD 66
G GL L AVL L A A +WC CT SH +C T C + S++
Sbjct: 4 GTGLLLAAVLSLQLAAAEAIWCHQCTGFGGCSH--GSRCLRDSTHCVTTATRVLSNTEDL 61
Query: 67 HSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCN 111
V KMC C + Y V + CC+ LCN
Sbjct: 62 PLVTKMCHIGCPDIPSLGLGPY-----------VSIACCQTSLCN 95
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 40.4 bits (93), Expect = 5e-04
Identities = 39/114 (34%), Positives = 50/114 (43%), Gaps = 22/114 (19%)
Query: 6 MKGLGLALLAVLL--CSAPAHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASV----RIT 58
M+G LALLA++L C A L C C T S C T C ++T+C + I
Sbjct: 1 MRGTRLALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIV 60
Query: 59 DPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK-VDVDCCEKDLCN 111
P D +V K CAS C SD GI + + V CC +LCN
Sbjct: 61 YPFQG--DSTVTKSCASKCKP------SDV------DGIGQTLPVSCCNTELCN 100
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.009
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)
Query: 11 LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 68
L L+ V+L P A L C C N +C P +C C + R + K
Sbjct: 5 LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59
Query: 69 VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 128
V+K C C F G+ CC+ DLCNG A + ALA LL
Sbjct: 60 VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109
Query: 129 LSL 131
+L
Sbjct: 110 ATL 112
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.009
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)
Query: 11 LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 68
L L+ V+L P A L C C N +C P +C C + R + K
Sbjct: 5 LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59
Query: 69 VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 128
V+K C C F G+ CC+ DLCNG A + ALA LL
Sbjct: 60 VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109
Query: 129 LSL 131
+L
Sbjct: 110 ATL 112
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.009
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)
Query: 11 LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 68
L L+ V+L P A L C C N +C P +C C + R + K
Sbjct: 5 LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59
Query: 69 VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 128
V+K C C F G+ CC+ DLCNG A + ALA LL
Sbjct: 60 VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109
Query: 129 LSL 131
+L
Sbjct: 110 ATL 112
>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]
Length = 131
Score = 35.8 bits (81), Expect = 0.012
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 20 SAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDF 79
++ A +WC CT SH +C T C + S++ V KMC C
Sbjct: 51 TSAAEAIWCHQCTGFGGCSH--GSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPD 108
Query: 80 VKRHFFSDYLMGFINSGILKVDVDCCEKDLCN 111
+ Y V + CC+ LCN
Sbjct: 109 IPSLGLGPY-----------VSIACCQTSLCN 129
>gi|9966907 ARS component B precursor [Homo sapiens]
Length = 103
Score = 34.3 bits (77), Expect = 0.034
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 26 LWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS--VNKMCASSCDFVKR 82
L C C S+ C T +C+P DT C + +T + + S V + C+SSC
Sbjct: 23 LKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVATDP 82
Query: 83 HFFSDYLMGFINSGILKVDVDCCEKDLCN 111
+ F CC +DLCN
Sbjct: 83 DSIGAAHLIF-----------CCFRDLCN 100
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 30.4 bits (67), Expect = 0.49
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 2 LPAAMKGLGLALLAV-LLCSAPAHGLWCQD 30
+PA L ALLA+ L C+APAH L C+D
Sbjct: 1 MPALRPALLWALLALWLCCAAPAHALQCRD 30
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 30.4 bits (67), Expect = 0.49
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 30 DCTLTTNSSHCTPKQCQPSDTVCASVRI------TDPSSSRKDHSVNKMCASSCD 78
DC ++ CTP+ C S+ CA+ R D D S K C CD
Sbjct: 3560 DCGDNSDEESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDCTPRCD 3614
Score = 28.1 bits (61), Expect = 2.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 32 TLTTNSSHCTPKQCQPSDTVCASVR 56
T N S+ P QCQP + CA+ R
Sbjct: 841 TCLANPSYVPPPQCQPGEFACANSR 865
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 30.4 bits (67), Expect = 0.49
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 28 CQDCTLTTNSSHCTPKQCQPSDTVC-----ASVRITDPSSSRKDHSVNKMCASSCDFVKR 82
C +CT S CT +CQ T+C VR D K +S + +C S
Sbjct: 1296 CNECTCIKGSWSCTQNECQ---TICHIYGEGHVRTFD----GKSYSFDGLCQYS------ 1342
Query: 83 HFFSDYLMGFINS--GILKVDVDCCEKDL 109
F DY G N IL V CCE L
Sbjct: 1343 -FLEDY-CGHENGTFRILTESVPCCEDGL 1369
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 30.4 bits (67), Expect = 0.49
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 28 CQDCTLTTNSSHCTPKQCQPSDTVC-----ASVRITDPSSSRKDHSVNKMCASSCDFVKR 82
C +CT S CT +CQ T+C VR D K +S + +C S
Sbjct: 1296 CNECTCIKGSWSCTQNECQ---TICHIYGEGHVRTFD----GKSYSFDGLCQYS------ 1342
Query: 83 HFFSDYLMGFINS--GILKVDVDCCEKDL 109
F DY G N IL V CCE L
Sbjct: 1343 -FLEDY-CGHENGTFRILTESVPCCEDGL 1369
>gi|126012573 low density lipoprotein-related protein 2 [Homo
sapiens]
Length = 4655
Score = 30.4 bits (67), Expect = 0.49
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 13 LLAVLLCSAPAHGLWCQDCTLTTNSSHCTP 42
LLA++ C APA G C S HC P
Sbjct: 13 LLALVACLAPASGQECDSAHFRCGSGHCIP 42
Score = 30.0 bits (66), Expect = 0.65
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 29 QDCTLTTNSSH---CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCD 78
QDC+ +T SSH C+ QC PS+ C VR + D +CD
Sbjct: 101 QDCSQSTCSSHQITCSNGQCIPSEYRCDHVRDCPDGADENDCQYPTCEQLTCD 153
Score = 26.6 bits (57), Expect = 7.1
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 28 CQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDF-VKRHFFS 86
C+D + +SSHC + C+P CA+ R P + + D V+ C D ++ S
Sbjct: 3619 CEDNS-DEDSSHCASRTCRPGQFRCANGRCI-PQAWKCD--VDNDCGDHSDEPIEECMSS 3674
Query: 87 DYLMGFINSGILKVDVDCCEK-DLCNG 112
+L K + C K +CNG
Sbjct: 3675 AHLCDNFTEFSCKTNYRCIPKWAVCNG 3701
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 30.0 bits (66), Expect = 0.65
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 19 CSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCAS-SC 77
CS G DC T C P P C R P+ D S CA C
Sbjct: 847 CSCDPQGAVRDDCEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADASAPATCAEMRC 906
Query: 78 DFVKR 82
+F R
Sbjct: 907 EFGAR 911
>gi|31563503 activity-dependent neuroprotector [Homo sapiens]
Length = 1102
Score = 30.0 bits (66), Expect = 0.65
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 43 KQCQPSD-----TVCASVRITDPSSSR-KDHSVNKMCASSCDFVKRHFFSDYLMGFIN 94
KQ +P+D T V + DPS ++ +D+ C S+C F + FFS Y F N
Sbjct: 39 KQFEPNDFYLKNTTWEDVGLWDPSLTKNQDYRTKPFCCSACPFSSK-FFSAYKSHFRN 95
>gi|12229217 activity-dependent neuroprotector [Homo sapiens]
Length = 1102
Score = 30.0 bits (66), Expect = 0.65
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 43 KQCQPSD-----TVCASVRITDPSSSR-KDHSVNKMCASSCDFVKRHFFSDYLMGFIN 94
KQ +P+D T V + DPS ++ +D+ C S+C F + FFS Y F N
Sbjct: 39 KQFEPNDFYLKNTTWEDVGLWDPSLTKNQDYRTKPFCCSACPFSSK-FFSAYKSHFRN 95
>gi|5032115 sprouty 2 [Homo sapiens]
Length = 315
Score = 29.6 bits (65), Expect = 0.84
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 8 GLGLALLAVLLCSAPAHGLW--CQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRK 65
G+ L L C PA G CQ C N C +C+ S+TVC V P + K
Sbjct: 257 GVMSLFLPCLWCYLPAKGCLKLCQGCYDRVNRPGC---RCKNSNTVCCKVPTVPPRNFEK 313
>gi|6912534 BMP and activin membrane-bound inhibitor precursor [Homo
sapiens]
Length = 260
Score = 28.9 bits (63), Expect = 1.4
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 36 NSSHC--TPKQCQPSDTVCASVRITDPSSSRKD--HSVNKMCASSCDFVKRHFFSDYLMG 91
+++HC T C+ + C S R+ DP +S H AS+ D + ++
Sbjct: 33 DAAHCVATGYMCKSELSACFS-RLLDPQNSNSPLTHGCLDSLASTTDICQAKQARNH--- 88
Query: 92 FINSGILKVDVDCCEKDLCN 111
SG ++CC +D+CN
Sbjct: 89 ---SGTTIPTLECCHEDMCN 105
>gi|20336300 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 [Homo
sapiens]
Length = 743
Score = 28.5 bits (62), Expect = 1.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 29 QDCTLTTNSSHCTPKQCQPSDTVCASVRITD 59
QD TL ++S +C K C+ C+++R+ D
Sbjct: 555 QDTTLNSSSEYCVEKWCRDYFLNCSALRMAD 585
>gi|30794264 glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1 [Homo sapiens]
Length = 184
Score = 28.1 bits (61), Expect = 2.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 6 MKGLGLALLAVLLCSAPAHG 25
MK LG LLA+LLC P G
Sbjct: 1 MKALGAVLLALLLCGRPGRG 20
>gi|148727298 keratin associated protein 10-6 [Homo sapiens]
Length = 365
Score = 28.1 bits (61), Expect = 2.5
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 19 CSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASS 76
C APA L ++ SS C P C+PS PS ++ CASS
Sbjct: 46 CCAPAPCLSLVCTPVSRVSSPCCPVTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASS 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.135 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,084,405
Number of Sequences: 37866
Number of extensions: 268254
Number of successful extensions: 856
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 96
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.