Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C2orf63 Sequence: fasta or formatted (464aa) NCBI GI: 208022639
Description:

hypothetical protein LOC130162 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {586aa} hypothetical protein LOC130162 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         31           2
 C cysteine            3.2         15           1
 D aspartate           6.0         28           2
 E glutamate           8.4         39           2
 F phenylalanine       3.7         17           2
 G glycine             3.9         18           2
 H histidine           1.9          9           1
 I isoleucine          7.8         36           2
 K lysine              8.4         39           2
 L leucine            11.2         52           3
 M methionine          3.2         15           1
 N asparagine          3.7         17           1
 P proline             2.8         13           1
 Q glutamine           6.5         30           2
 R arginine            3.7         17           2
 S serine              6.7         31           2
 T threonine           4.1         19           2
 V valine              4.5         21           1
 W tryptophan          0.9          4           1
 Y tyrosine            2.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC130162 isoform 2 
C2orf63               1.000   hypothetical protein LOC130162 isoform 1 
CLTC                  0.049   clathrin heavy chain 1 
CLTCL1                0.046   clathrin, heavy polypeptide-like 1 isoform 2 
CLTCL1                0.046   clathrin, heavy polypeptide-like 1 isoform 1 
CCDC88A               0.012   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.012   coiled-coil domain containing 88A isoform 1 
ANKRD26               0.010   ankyrin repeat domain 26 
UTP14C                0.009   UTP14, U3 small nucleolar ribonucleoprotein, homolog...
CCDC144A              0.009   coiled-coil domain containing 144A 
LAMB1                 0.008   laminin, beta 1 precursor 
PMFBP1                0.008   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.008   polyamine modulated factor 1 binding protein 1 isof...
TLR7                  0.008   toll-like receptor 7 
TBC1D14               0.008   TBC1 domain family, member 14 isoform a 
TBC1D14               0.008   TBC1 domain family, member 14 isoform a 
UTP14A                0.008   UTP14, U3 small nucleolar ribonucleoprotein, homolog...
MYH13                 0.007   myosin, heavy polypeptide 13, skeletal muscle [Homo...
ADSL                  0.007   adenylosuccinate lyase isoform a 
KIAA1429              0.007   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.007   hypothetical protein LOC25962 isoform 2 
MRPS27                0.007   mitochondrial ribosomal protein S27 
TBC1D14               0.006   TBC1 domain family, member 14 isoform b 
DNAH17                0.006   PREDICTED: dynein, axonemal, heavy chain 17 
CENPF                 0.006   centromere protein F 
DNAH17                0.006   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.006   PREDICTED: dynein, axonemal, heavy chain 17 
MYO9B                 0.004   myosin IXB isoform 2 
MYO9B                 0.004   myosin IXB isoform 1 
NUMA1                 0.004   nuclear mitotic apparatus protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press