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Search of human proteins with 207028821
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|207028821 RNA binding motif protein 44 [Homo sapiens]
(1052 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|207028821 RNA binding motif protein 44 [Homo sapiens] 2097 0.0
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 49 2e-05
gi|38569484 kinesin family member 21A [Homo sapiens] 42 0.003
gi|8922328 RNA binding motif protein 22 [Homo sapiens] 41 0.005
gi|21450675 RNA binding motif protein 46 [Homo sapiens] 40 0.009
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 40 0.009
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 40 0.009
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 40 0.015
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 40 0.015
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 40 0.015
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 40 0.015
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 40 0.015
gi|5454064 RNA binding motif protein 14 [Homo sapiens] 39 0.020
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 39 0.026
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 39 0.034
gi|115527120 nebulin [Homo sapiens] 39 0.034
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 38 0.044
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 38 0.044
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 37 0.075
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 37 0.075
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 37 0.075
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 37 0.075
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 37 0.098
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 37 0.098
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 37 0.098
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 37 0.098
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 37 0.098
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 37 0.098
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 37 0.098
gi|9558733 transformer-2 alpha [Homo sapiens] 37 0.098
>gi|207028821 RNA binding motif protein 44 [Homo sapiens]
Length = 1052
Score = 2097 bits (5434), Expect = 0.0
Identities = 1052/1052 (100%), Positives = 1052/1052 (100%)
Query: 1 MMQATAVVETASGKGYHSNGGNLQKDKPSNPKKENLLLSSNGCDEVKLTFPDDDWNSSTL 60
MMQATAVVETASGKGYHSNGGNLQKDKPSNPKKENLLLSSNGCDEVKLTFPDDDWNSSTL
Sbjct: 1 MMQATAVVETASGKGYHSNGGNLQKDKPSNPKKENLLLSSNGCDEVKLTFPDDDWNSSTL 60
Query: 61 EQRANNKEISNIDKMDLLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSES 120
EQRANNKEISNIDKMDLLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSES
Sbjct: 61 EQRANNKEISNIDKMDLLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSES 120
Query: 121 KLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGLERIYNISDANYRESAEDTQKHD 180
KLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGLERIYNISDANYRESAEDTQKHD
Sbjct: 121 KLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGLERIYNISDANYRESAEDTQKHD 180
Query: 181 TDEDSQQEYHSAEEQEYISNHLSFDQTKALDISNPEVVELGNSGYEVKCASNVEDNRVNS 240
TDEDSQQEYHSAEEQEYISNHLSFDQTKALDISNPEVVELGNSGYEVKCASNVEDNRVNS
Sbjct: 181 TDEDSQQEYHSAEEQEYISNHLSFDQTKALDISNPEVVELGNSGYEVKCASNVEDNRVNS 240
Query: 241 GSGSIISFDSLDVYGQEESLHVSKFQNSVMLREYHDLKHEKYKEQETNSMYHTVFDGSVL 300
GSGSIISFDSLDVYGQEESLHVSKFQNSVMLREYHDLKHEKYKEQETNSMYHTVFDGSVL
Sbjct: 241 GSGSIISFDSLDVYGQEESLHVSKFQNSVMLREYHDLKHEKYKEQETNSMYHTVFDGSVL 300
Query: 301 RSNSPGNQESQSKSGSLSPQKVLKMKIYTENMKSQINEGKDFCGNKIVENKILLHLENPS 360
RSNSPGNQESQSKSGSLSPQKVLKMKIYTENMKSQINEGKDFCGNKIVENKILLHLENPS
Sbjct: 301 RSNSPGNQESQSKSGSLSPQKVLKMKIYTENMKSQINEGKDFCGNKIVENKILLHLENPS 360
Query: 361 TLPQDKALETLLQPCKDCQTSWTSVFDDSIISACGYYESLQNTADSALDFSAMLPKIAVR 420
TLPQDKALETLLQPCKDCQTSWTSVFDDSIISACGYYESLQNTADSALDFSAMLPKIAVR
Sbjct: 361 TLPQDKALETLLQPCKDCQTSWTSVFDDSIISACGYYESLQNTADSALDFSAMLPKIAVR 420
Query: 421 DNQAIEDNTSLKVAHSSTTKKTCFHNIGEMCTKSLTDAASCTVTINQTVDVSTDFRACFT 480
DNQAIEDNTSLKVAHSSTTKKTCFHNIGEMCTKSLTDAASCTVTINQTVDVSTDFRACFT
Sbjct: 421 DNQAIEDNTSLKVAHSSTTKKTCFHNIGEMCTKSLTDAASCTVTINQTVDVSTDFRACFT 480
Query: 481 TSRATSARPSVVSTSSNTEITMMNKKRPDEWQNEKQKSVACSTDWSYSEDCIDTQMAITK 540
TSRATSARPSVVSTSSNTEITMMNKKRPDEWQNEKQKSVACSTDWSYSEDCIDTQMAITK
Sbjct: 481 TSRATSARPSVVSTSSNTEITMMNKKRPDEWQNEKQKSVACSTDWSYSEDCIDTQMAITK 540
Query: 541 GSGKSLSVDSLKPNGNFLNKDFLELRKACGITDLKKHPEREFQLFKDTEKDLPSMCCQKI 600
GSGKSLSVDSLKPNGNFLNKDFLELRKACGITDLKKHPEREFQLFKDTEKDLPSMCCQKI
Sbjct: 541 GSGKSLSVDSLKPNGNFLNKDFLELRKACGITDLKKHPEREFQLFKDTEKDLPSMCCQKI 600
Query: 601 MQRAIKAELHLLNVHYQMCRRHCCDIYKLVMENREGLNMNLSSNSAKKELGSALLSLLGD 660
MQRAIKAELHLLNVHYQMCRRHCCDIYKLVMENREGLNMNLSSNSAKKELGSALLSLLGD
Sbjct: 601 MQRAIKAELHLLNVHYQMCRRHCCDIYKLVMENREGLNMNLSSNSAKKELGSALLSLLGD 660
Query: 661 LKVRYVTLKEKIHKGIPLEELPPLSLESKLLSTFSTFASRLMKKETHVFSEADAEQDNQR 720
LKVRYVTLKEKIHKGIPLEELPPLSLESKLLSTFSTFASRLMKKETHVFSEADAEQDNQR
Sbjct: 661 LKVRYVTLKEKIHKGIPLEELPPLSLESKLLSTFSTFASRLMKKETHVFSEADAEQDNQR 720
Query: 721 AHDVDVSSNLKKTLSQMSLSSDNSHATQNISPKKDDFKNGDINADFSQLKLGDKDCRHYQ 780
AHDVDVSSNLKKTLSQMSLSSDNSHATQNISPKKDDFKNGDINADFSQLKLGDKDCRHYQ
Sbjct: 721 AHDVDVSSNLKKTLSQMSLSSDNSHATQNISPKKDDFKNGDINADFSQLKLGDKDCRHYQ 780
Query: 781 ETSEDWSDAKESLTGVDVSGTQGNQVEQDTWNLDLTGEMKNVEPSQRDKGYLIHVGGLCP 840
ETSEDWSDAKESLTGVDVSGTQGNQVEQDTWNLDLTGEMKNVEPSQRDKGYLIHVGGLCP
Sbjct: 781 ETSEDWSDAKESLTGVDVSGTQGNQVEQDTWNLDLTGEMKNVEPSQRDKGYLIHVGGLCP 840
Query: 841 SVSEADLRSHFQKYQVSEISIYDSTNYRYASLAFTKNSDAKIAVKEMNGIEINGKSVNVW 900
SVSEADLRSHFQKYQVSEISIYDSTNYRYASLAFTKNSDAKIAVKEMNGIEINGKSVNVW
Sbjct: 841 SVSEADLRSHFQKYQVSEISIYDSTNYRYASLAFTKNSDAKIAVKEMNGIEINGKSVNVW 900
Query: 901 PVKILGEYTSPLSSKNGNRISSNNLEKSTNKQIHSEFSISRLPRTRPRQLGSEQDSEVFP 960
PVKILGEYTSPLSSKNGNRISSNNLEKSTNKQIHSEFSISRLPRTRPRQLGSEQDSEVFP
Sbjct: 901 PVKILGEYTSPLSSKNGNRISSNNLEKSTNKQIHSEFSISRLPRTRPRQLGSEQDSEVFP 960
Query: 961 SDQGVKKNCKQIESAKLLPDTPVQFIPPNTLNLRSFTKIIKRLAELHPEVSRDHIINALQ 1020
SDQGVKKNCKQIESAKLLPDTPVQFIPPNTLNLRSFTKIIKRLAELHPEVSRDHIINALQ
Sbjct: 961 SDQGVKKNCKQIESAKLLPDTPVQFIPPNTLNLRSFTKIIKRLAELHPEVSRDHIINALQ 1020
Query: 1021 EVRIRHKGFLNGLSITTIVEMTSSLLKNSASS 1052
EVRIRHKGFLNGLSITTIVEMTSSLLKNSASS
Sbjct: 1021 EVRIRHKGFLNGLSITTIVEMTSSLLKNSASS 1052
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 48.9 bits (115), Expect = 2e-05
Identities = 102/534 (19%), Positives = 193/534 (36%), Gaps = 41/534 (7%)
Query: 17 HSNGGNLQKDKPSNPKKENLLLSSNGCDEVKLTFPDDDWNSSTLEQRANNKEISNIDKMD 76
+ N GN DK + K ++ S+ D + D +S + + +N+ S+ D
Sbjct: 529 NGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSD--SNSSSDSDSSDSD 586
Query: 77 LLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDP 136
+ S S D++ S SS+ DS+D S S+SK SS+ D
Sbjct: 587 SSDSSDSDSSDSSNSSDSSDSSDSSDSSD--------SSDSSDSKSDSSKSESDSSDSDS 638
Query: 137 EVQKKEEVFFNILEHQDKTVGLERIYNISDANYRESAEDTQKHDTDEDSQQEYHSAEEQE 196
+ + + ++ D + N S+++ + D+ + DS S++ +
Sbjct: 639 KSDSSDSNSSDSSDNSDSSDSS----NSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSD 694
Query: 197 YISNHLSFDQTKALDISNPEVVELGNSGYEVKCASNVEDNRVNSGSGSIISFDSLDVYGQ 256
++ S D + + D + + + NS +SN D+ +S S S DS D
Sbjct: 695 SSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSD--SSDSSDSSNS 752
Query: 257 EESLHVSKFQNSVMLREYHDLKHEKYKEQETNSMYHTVFDGSVLRSNSPGNQESQSKSGS 316
+S S NS + D ++S + S SNS + S S S
Sbjct: 753 SDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDS 812
Query: 317 LSPQKVLKMKIYTENMKSQINEGKDFCGNKIVENKILLHLENPSTLPQDKALETLLQPCK 376
+++ S + D + + + S+ D +
Sbjct: 813 ------------SDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSD 860
Query: 377 DCQTSWTSVFDDSIISACGYYESLQNTADSALDFSAMLPKIAVRDNQAIEDNTSLKVAHS 436
+S +S DS S+ S N + ++ D S D+ D+ S ++S
Sbjct: 861 SSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSS---------DSSNSSDSDSSDSSNS 911
Query: 437 STTKKTCFHNIGEMCTKSLTDAASCTVTINQTVDVSTDFRACFTTSRATSARPSVVSTSS 496
S + + + + S ++ S + + S+D +S ++ + S S+ S
Sbjct: 912 SDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDS 971
Query: 497 NTEITMMNKKRPDEWQNEKQKSVACSTDWSYSEDCIDTQMAITKGSGKSLSVDS 550
N+ + + D + + S+D S S D D+ + S S S DS
Sbjct: 972 NSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDS----SDSSDSSNSSDS 1021
Score = 42.4 bits (98), Expect = 0.002
Identities = 97/512 (18%), Positives = 187/512 (36%), Gaps = 34/512 (6%)
Query: 39 SSNGCDEVKLTFPDDDWNSSTLEQRANNKEISNIDKMDLLEPFFSVSQDTNTESTQFQSS 98
SSN D + D +SS ++ S D D S S+ +++S SS
Sbjct: 598 SSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSD------SDSKSDSSDSNSSDSS 651
Query: 99 ELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGL 158
+ DS+D + N + S S+S +S + S + + N E D +
Sbjct: 652 DNSDSSDSS--NSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSS-NSSESSDSS--- 705
Query: 159 ERIYNISDANYRESAEDTQKHDTDEDSQQEYHSAEEQEYISNHLSFDQTKALDISNPEVV 218
+ SD++ +S++ + + +D DS S++ S D + + D SN
Sbjct: 706 ----DSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSN------SSDSSDSSDSSNSS-- 753
Query: 219 ELGNSGYEVKCASNVEDNRVNSGSGSIISFDSLDVYGQEESLHVSKFQNSVMLREYHDLK 278
+ +S + + + + + S S S DS D +S S +S + D
Sbjct: 754 DSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSS 813
Query: 279 HEKYKEQETNSMYHTVFDGSVLRSNSPGNQESQSKSGSLSPQKVLKMKIYTENMKSQINE 338
+ +S D S ++S + S S GS S + S ++
Sbjct: 814 DSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSS-------NRSDSSNSSD 866
Query: 339 GKDFCGNKIVENKILLHLENPSTLPQDKALETLLQPCKDCQTSWTSVFDDSIISACGYYE 398
D + + N S+ D + + +S +S DS S+
Sbjct: 867 SSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSES 926
Query: 399 SLQNTADSALDFSAMLPKIAVRDNQAIEDNTSLKVAHSSTTKKTCFHNIGEMCTKSLTDA 458
S N++D++ + + + + + S + SS + + N + S +
Sbjct: 927 S--NSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSD 984
Query: 459 ASCTVTINQTVDVSTDFRACFTTSRATSARPSVVSTSSNTEITMMNKKRPDEWQNEKQKS 518
+S + + + D S + ++ + S+ S S SSN+ + + D +
Sbjct: 985 SSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSD 1044
Query: 519 VACSTDWSYSEDCIDTQMAITKGSGKSLSVDS 550
+ S+D S S + D+ + + S S S DS
Sbjct: 1045 SSDSSDSSDSSNSSDSSDS-SDSSDSSDSSDS 1075
Score = 30.8 bits (68), Expect = 7.0
Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 5/214 (2%)
Query: 39 SSNGCDEVKLTFPDDDWNSSTLEQRANNKEISNI-DKMDLLEPFFSVSQDTNTESTQFQS 97
SSN D + D +SS +++ + SN D D + S S D++ S S
Sbjct: 1090 SSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDS--SDSSDSSNSSDSSDS 1147
Query: 98 SELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVG 157
SE DS+D + + + S + S D + + D +
Sbjct: 1148 SESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDS 1207
Query: 158 LERIYNISDANYRESAEDTQKHDTDE--DSQQEYHSAEEQEYISNHLSFDQTKALDISNP 215
+ + ++ +S++ + D++E DS S++ + S D + + SN
Sbjct: 1208 SDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSDSTSDSND 1267
Query: 216 EVVELGNSGYEVKCASNVEDNRVNSGSGSIISFD 249
E SG S+ + + S S S D
Sbjct: 1268 ESDSQSKSGNGNNNGSDSDSDSEGSDSNHSTSDD 1301
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 42.0 bits (97), Expect = 0.003
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 53 DDWNSSTLEQRANNKEI-SNIDKMDLLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNK 111
+D + LE A N+ + N+ + P+FS S +T S SS+ E K
Sbjct: 487 EDLRAKLLESEAVNENLRKNLTRATARAPYFSGS---STFSPTILSSDKETIEIIDLAKK 543
Query: 112 TYSIPYSESKLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGLERIYNISDANYRE 171
+ K KK+S+ D + +KKEE + E ++ + +E +SD E
Sbjct: 544 DLEKLKRKEKRKKKSVAGKEDNTDTDQEKKEEK--GVSERENNELEVEESQEVSDHEDEE 601
Query: 172 SAEDTQKHDTDEDSQQEYHSAEEQE 196
E+ ++ D D + +E E
Sbjct: 602 EEEEEEEDDIDGGESSDESDSESDE 626
>gi|8922328 RNA binding motif protein 22 [Homo sapiens]
Length = 420
Score = 41.2 bits (95), Expect = 0.005
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 819 MKNVEPSQRDKGYLIHVGGLCPSVSEADLRSHFQKYQVSEI-SIYDSTNYRYASLAFTKN 877
M ++P + ++VGGL +++E DLR+HF YQ EI +I + A + F
Sbjct: 220 MPRLDPPEDKTITTLYVGGLGDTITETDLRNHF--YQFGEIRTITVVQRQQCAFIQFATR 277
Query: 878 SDAKIAV-KEMNGIEINGKSVNV 899
A++A K N + +NG+ +NV
Sbjct: 278 QAAEVAAEKSFNKLIVNGRRLNV 300
>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
Length = 533
Score = 40.4 bits (93), Expect = 0.009
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 810 TWNLDLTGEMKNVEPSQRDKGYLIHVGGLCPSVSEADLRSHFQKYQVSEISIYDSTNYRY 869
T +D K V+ + +++V L S +E +++ F K++ + Y
Sbjct: 215 TIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLR-DY 273
Query: 870 ASLAFTKNSDAKIAVKEMNGIEINGKSVNVWPVKILGEYTSPLSSKNGN-RISSNNLEKS 928
A + F DA A+ MNG I+G S+ V K + + + NG +S NL
Sbjct: 274 AFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQISPNSENLIVF 333
Query: 929 TNKQIHSEFSISRLPRTRPRQLGSE 953
NK+ ++ +LP T P +L +
Sbjct: 334 ANKEESHPKTLGKLP-TLPARLNGQ 357
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 40.4 bits (93), Expect = 0.009
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 833 IHVGGLCPSVSEADLRSHFQKY-QVSEISIYD---STNYRYASLAFTKNSDAKIAVKEMN 888
+ +GGL +E L++ F K+ +SE+ + S + +A + F +DAK A K+MN
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 889 GIEINGKSVNVWPVK-----ILGEYTSPLSSKN 916
G ++GK++ V K G P SS+N
Sbjct: 70 GTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRN 102
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 40.4 bits (93), Expect = 0.009
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 833 IHVGGLCPSVSEADLRSHFQKY-QVSEISIYD---STNYRYASLAFTKNSDAKIAVKEMN 888
+ +GGL +E L++ F K+ +SE+ + S + +A + F +DAK A K+MN
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 889 GIEINGKSVNVWPVK-----ILGEYTSPLSSKN 916
G ++GK++ V K G P SS+N
Sbjct: 70 GTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRN 102
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 39.7 bits (91), Expect = 0.015
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 828 DKGYLIHVGGLCPSVSEADLRSHFQKY-QVSEISI-YDSTNYR---YASLAFTKNSDAKI 882
D + V GL +E DLR F KY ++++SI YD + R +A + F DAK
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 883 AVKEMNGIEINGKSVNV 899
A + NG+E++G+ + V
Sbjct: 175 AKERANGMELDGRRIRV 191
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 39.7 bits (91), Expect = 0.015
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 833 IHVGGLCPSVSEADLRSHFQKY-QVSEISIYD---STNYRYASLAFTKNSDAKIAVKEMN 888
+ +GGL +E L++ F K+ +SE+ + S + +A + F +DAK A K+MN
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 889 GIEINGKSVNVWPVK-----ILGEYTSPLSSKN 916
G ++GK++ V K G P SS+N
Sbjct: 70 GKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRN 102
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 39.7 bits (91), Expect = 0.015
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 833 IHVGGLCPSVSEADLRSHFQKY-QVSEISIYD---STNYRYASLAFTKNSDAKIAVKEMN 888
+ +GGL +E L++ F K+ +SE+ + S + +A + F +DAK A K+MN
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 889 GIEINGKSVNVWPVK-----ILGEYTSPLSSKN 916
G ++GK++ V K G P SS+N
Sbjct: 70 GKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRN 102
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 39.7 bits (91), Expect = 0.015
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 833 IHVGGLCPSVSEADLRSHFQKY-QVSEISIYD---STNYRYASLAFTKNSDAKIAVKEMN 888
+ +GGL +E L++ F K+ +SE+ + S + +A + F +DAK A K+MN
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 889 GIEINGKSVNVWPVK-----ILGEYTSPLSSKN 916
G ++GK++ V K G P SS+N
Sbjct: 70 GKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRN 102
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 39.7 bits (91), Expect = 0.015
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 833 IHVGGLCPSVSEADLRSHFQKY-QVSEISIYD---STNYRYASLAFTKNSDAKIAVKEMN 888
+ +GGL +E L++ F K+ +SE+ + S + +A + F +DAK A K+MN
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 889 GIEINGKSVNVWPVK-----ILGEYTSPLSSKN 916
G ++GK++ V K G P SS+N
Sbjct: 70 GKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRN 102
>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
Length = 669
Score = 39.3 bits (90), Expect = 0.020
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 833 IHVGGLCPSVSEADLRSHFQKY-QVSEISIYDSTNYRYASLAFTKNSDAKIAVKEMNGIE 891
I VG + + + +LRS F++ +V E + YA + K +DAK A+ ++NG E
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKE 136
Query: 892 INGKSVNV 899
+ GK +NV
Sbjct: 137 VKGKRINV 144
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 38.9 bits (89), Expect = 0.026
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 833 IHVGGLCPSVSEADLRSHFQKYQ-------VSEISIYDSTNYRYASLAFTKNSDAKIAVK 885
++VG L P V+EA L F ++ S+NY Y + TK DA+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTK--DAEHALD 70
Query: 886 EMNGIEINGKSVNVWPVKILGEYTSPLSSKNG-NRISSNNLEKSTNKQ 932
MN I GK PV+I+ P K+G I NL+KS N +
Sbjct: 71 TMNFDVIKGK-----PVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNK 113
Score = 33.1 bits (74), Expect = 1.4
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 869 YASLAFTKNSDAKIAVKEMNGIEINGKSVNV 899
+ ++F ++ DA+ AV EMNG E+NGK + V
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 30.8 bits (68), Expect = 7.0
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 796 VDVSGTQGNQVEQDTWNLD-LTGEMKNVEPSQRDKGYL------IHVGGLCPSVSEA--- 845
V+ T+ + DT N D + G+ + SQRD I V L S++
Sbjct: 57 VNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 846 DLRSHFQKYQVSEISIYDSTNYRYASLAFTKNSDAKIAVKEMNGIEINGKSVNVWPVKIL 905
D S F + ++ + Y + F + A+ A+K+MNG+ +NG+ V V K
Sbjct: 117 DTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 906 GEYTSPLSSK 915
E + L ++
Sbjct: 177 KEREAELGAR 186
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 38.5 bits (88), Expect = 0.034
Identities = 130/640 (20%), Positives = 242/640 (37%), Gaps = 92/640 (14%)
Query: 61 EQRAN-NKEISNI-DKMDLLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYS 118
E+R N E+S + D+++ L+ SQ N + +Q Q +LE++ D ++
Sbjct: 507 EKRRNVENEVSTLKDQLEDLKKVSQNSQLANEKLSQLQK-QLEEANDLLRTESDTAVRLR 565
Query: 119 ESKLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGLERIYNISDANYRESAEDTQK 178
+S + L+ E+Q++ + N DK ++ I +A R+ D++
Sbjct: 566 KSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY--YQLQAILEAERRDRGHDSEM 623
Query: 179 HDTDEDSQQEYHSAEEQEYISNH----LSFDQTKALDISNPEVVELGNS----GYEVKCA 230
D Q S +E+ H + ++ +A D+ N E N Y++K
Sbjct: 624 IG---DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL 680
Query: 231 SNVEDNRVNSGSGSIISFDSLDVYGQ-EESLHVSKFQNSVMLREYHDLKHEKYKEQETNS 289
+ VN + D + EE+ V+ + L+E + + +
Sbjct: 681 QQRLEQEVNEHK--VTKARLTDKHQSIEEAKSVAMCEMEKKLKEEREAREKAENRVVQIE 738
Query: 290 MYHTVFDGSVLRSNSP-----GNQE---SQSKSGSLSPQKVLKMKIYTEN-MKSQINEGK 340
++ D + +S GN+E + K+ +L ++ ++ +N +K+Q E
Sbjct: 739 KQCSMLDVDLKQSQQKLEHLTGNKERMEDEVKNLTLQLEQESNKRLLLQNELKTQAFEAD 798
Query: 341 DFCG---------NKIVENKILLHLENPSTLPQDKALETLLQPCKDCQTSWTSVFDDSII 391
+ G N ++E K LL E Q + E ++ +D +
Sbjct: 799 NLKGLEKQMKQEINTLLEAKRLLEFELAQLTKQYRGNEGQMRELQDQ------------L 846
Query: 392 SACGYYESLQNTADSALDFSAM------LPKIAVRDNQAIEDNTSLKVAHSSTTKKTCFH 445
A Y+ +L T L L KI N+ T L +A + +
Sbjct: 847 EAEQYFSTLYKTQVKELKEEIEEKNRENLKKIQELQNEKETLATQLDLAETKAESEQLAR 906
Query: 446 NIGEMCTKSLTDAASCTVTINQTVDVSTDFRACFTTSRATSARPSV-----VSTSSNTEI 500
+ E LT + + N+ D T SR A + + N E+
Sbjct: 907 GLLEEQYFELTQESKKAASRNRQEITDKDH----TVSRLEEANSMLTKDIEILRRENEEL 962
Query: 501 TMMNKKRPDEWQNEKQKSVACSTDWSYSEDCIDTQMAITKGSGKSLSVDSLKPNGNFLNK 560
T KK +E++ EK++ + S + E I+T+ + K+ +V+ L N K
Sbjct: 963 TEKMKKAEEEYKLEKEEEI--SNLKAAFEKNINTERTL-----KTQAVNKLAEIMN--RK 1013
Query: 561 DFLELRKACGITDLKKHPE--REFQLFKDTEKDLPSMCCQKIMQRAIKAELHLLNVHYQM 618
DF RK DL+K + R+ QL + E+ +K Q +K + L ++ Q+
Sbjct: 1014 DFKIDRKKANTQDLRKKEKENRKLQLELNQER-------EKFNQMVVKHQKELNDMQAQL 1066
Query: 619 CRRHCCDIYKLVMENREGLNMNLSSNSAK-KELGSALLSL 657
+R L M L+S + ++L + LL L
Sbjct: 1067 VEE---------CAHRNELQMQLASKESDIEQLRAKLLDL 1097
>gi|115527120 nebulin [Homo sapiens]
Length = 6669
Score = 38.5 bits (88), Expect = 0.034
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 7/148 (4%)
Query: 58 STLEQRANNKEISNIDKMDL---LEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTYS 114
S + +A +EI I K +L L F + S ++L+D + + +T +
Sbjct: 1013 SDIAYKAKGEEI--IHKYNLPPDLPQFIQAKVNAYNISENMYKADLKDLSKKGYDLRTDA 1070
Query: 115 IPYSESKLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGLERIYNI-SDANYRESA 173
IP +K +++ + + + D E K + V F L+ K V + I SD Y++
Sbjct: 1071 IPIRAAKAARQAASDVQYKKDYEKAKGKMVGFQSLQDDPKLVHYMNVAKIQSDREYKKDY 1130
Query: 174 EDTQ-KHDTDEDSQQEYHSAEEQEYISN 200
E T+ K++T D + + Q+ +SN
Sbjct: 1131 EKTKSKYNTPHDMFNVVAAKKAQDVVSN 1158
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 38.1 bits (87), Expect = 0.044
Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 16/230 (6%)
Query: 24 QKDKPSNPKKENLLLSSNG---CDEVKLTFPDDDWNSSTLEQRANNKEISNIDKMDLLEP 80
Q D S P K+ + + NG CD F SS+L + + + +
Sbjct: 868 QNDSDSTPPKKKMRKTENGMYACDLCDKIFQ----KSSSLLRHKYEHTGKRPHECGICKK 923
Query: 81 FFSVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQK 140
F E + S E D ++S YS+ + S +E + + +
Sbjct: 924 AFKHKHHL-IEHMRLHSGEKPYQCDKCGKRFSHSGSYSQHMNHRYSYCKREAE-ERDSTE 981
Query: 141 KEEVFFNILEHQDKTVGLERIYNISDANYRESA-----EDTQKHDTDEDSQQEYHSAEEQ 195
+EE IL ++ VG + D++ RES ED++K + +ED + E E++
Sbjct: 982 QEEAGPEILSNEH--VGARASPSQGDSDERESLTREEDEDSEKEEEEEDKEMEELQEEKE 1039
Query: 196 EYISNHLSFDQTKALDISNPEVVELGNSGYEVKCASNVEDNRVNSGSGSI 245
++ + ++ EV E N G E K ++D+R S + S+
Sbjct: 1040 CEKPQGDEEEEEEEEEVEEEEVEEAENEGEEAKTEGLMKDDRAESQASSL 1089
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 38.1 bits (87), Expect = 0.044
Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 16/230 (6%)
Query: 24 QKDKPSNPKKENLLLSSNG---CDEVKLTFPDDDWNSSTLEQRANNKEISNIDKMDLLEP 80
Q D S P K+ + + NG CD F SS+L + + + +
Sbjct: 884 QNDSDSTPPKKKMRKTENGMYACDLCDKIFQ----KSSSLLRHKYEHTGKRPHECGICKK 939
Query: 81 FFSVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQK 140
F E + S E D ++S YS+ + S +E + + +
Sbjct: 940 AFKHKHHL-IEHMRLHSGEKPYQCDKCGKRFSHSGSYSQHMNHRYSYCKREAE-ERDSTE 997
Query: 141 KEEVFFNILEHQDKTVGLERIYNISDANYRESA-----EDTQKHDTDEDSQQEYHSAEEQ 195
+EE IL ++ VG + D++ RES ED++K + +ED + E E++
Sbjct: 998 QEEAGPEILSNEH--VGARASPSQGDSDERESLTREEDEDSEKEEEEEDKEMEELQEEKE 1055
Query: 196 EYISNHLSFDQTKALDISNPEVVELGNSGYEVKCASNVEDNRVNSGSGSI 245
++ + ++ EV E N G E K ++D+R S + S+
Sbjct: 1056 CEKPQGDEEEEEEEEEVEEEEVEEAENEGEEAKTEGLMKDDRAESQASSL 1105
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 37.4 bits (85), Expect = 0.075
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 64 ANNKEISNID---KMDLLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTY------- 113
ANN + ++ +++ P F + Q T+ + E+ + A + Y
Sbjct: 122 ANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAA 181
Query: 114 --SIPYSESKLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGLERIYNISDANYRE 171
+I E+KLK E T L E+ P +QK +E + LE+Q +E + + A
Sbjct: 182 QKTIEKKEAKLK-EIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFL 240
Query: 172 SAEDTQKHDTDEDSQQEYHSAEEQEYISNHLSFDQTKALDISNPEVVEL 220
AEDT+ +E + + + QE +S + K + N E+ EL
Sbjct: 241 LAEDTKVRSAEELKEMQDKVIKLQEELS-----ENDKKIKALNHEIEEL 284
Score = 34.3 bits (77), Expect = 0.63
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 111 KTYSIPYSESKLKKESLTPLSSELDP----------------EVQKKEEVFFNILEHQDK 154
KT ++KL++ S ELD E+Q+K E + +LE++ K
Sbjct: 722 KTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEVLENKMK 781
Query: 155 TVGLERIYNISDAN-----YRESAEDTQKHDTDEDSQQEYHSAEEQEYISNHLSFDQTKA 209
ER + DA + A+ + K ++ + E + E +E H S+ Q
Sbjct: 782 NAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQ--Q 839
Query: 210 LDISNPEVVELGNSGYEVKCASNVEDNRVNSGSGSIISFDSLDVYGQEESLHVSKFQNSV 269
L+ N E ++ S EV A+ V N+ + +V ++++ +K+
Sbjct: 840 LEAVN-EAIKSYESQIEV-MAAEVAKNKESVNKAQEEVTKQKEVITAQDTVIKAKYAEVA 897
Query: 270 MLREYHDLKHEKYKEQETNSMYH 292
+E ++ K KE + N H
Sbjct: 898 KHKEQNNDSQLKIKELDHNISKH 920
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 37.4 bits (85), Expect = 0.075
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 64 ANNKEISNID---KMDLLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTY------- 113
ANN + ++ +++ P F + Q T+ + E+ + A + Y
Sbjct: 122 ANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAA 181
Query: 114 --SIPYSESKLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGLERIYNISDANYRE 171
+I E+KLK E T L E+ P +QK +E + LE+Q +E + + A
Sbjct: 182 QKTIEKKEAKLK-EIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFL 240
Query: 172 SAEDTQKHDTDEDSQQEYHSAEEQEYISNHLSFDQTKALDISNPEVVEL 220
AEDT+ +E + + + QE +S + K + N E+ EL
Sbjct: 241 LAEDTKVRSAEELKEMQDKVIKLQEELS-----ENDKKIKALNHEIEEL 284
Score = 34.3 bits (77), Expect = 0.63
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 111 KTYSIPYSESKLKKESLTPLSSELDP----------------EVQKKEEVFFNILEHQDK 154
KT ++KL++ S ELD E+Q+K E + +LE++ K
Sbjct: 722 KTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEVLENKMK 781
Query: 155 TVGLERIYNISDAN-----YRESAEDTQKHDTDEDSQQEYHSAEEQEYISNHLSFDQTKA 209
ER + DA + A+ + K ++ + E + E +E H S+ Q
Sbjct: 782 NAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQ--Q 839
Query: 210 LDISNPEVVELGNSGYEVKCASNVEDNRVNSGSGSIISFDSLDVYGQEESLHVSKFQNSV 269
L+ N E ++ S EV A+ V N+ + +V ++++ +K+
Sbjct: 840 LEAVN-EAIKSYESQIEV-MAAEVAKNKESVNKAQEEVTKQKEVITAQDTVIKAKYAEVA 897
Query: 270 MLREYHDLKHEKYKEQETNSMYH 292
+E ++ K KE + N H
Sbjct: 898 KHKEQNNDSQLKIKELDHNISKH 920
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 37.4 bits (85), Expect = 0.075
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 64 ANNKEISNID---KMDLLEPFFSVSQDTNTESTQFQSSELEDSTDYAFLNKTY------- 113
ANN + ++ +++ P F + Q T+ + E+ + A + Y
Sbjct: 122 ANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAA 181
Query: 114 --SIPYSESKLKKESLTPLSSELDPEVQKKEEVFFNILEHQDKTVGLERIYNISDANYRE 171
+I E+KLK E T L E+ P +QK +E + LE+Q +E + + A
Sbjct: 182 QKTIEKKEAKLK-EIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFL 240
Query: 172 SAEDTQKHDTDEDSQQEYHSAEEQEYISNHLSFDQTKALDISNPEVVEL 220
AEDT+ +E + + + QE +S + K + N E+ EL
Sbjct: 241 LAEDTKVRSAEELKEMQDKVIKLQEELS-----ENDKKIKALNHEIEEL 284
Score = 34.3 bits (77), Expect = 0.63
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 111 KTYSIPYSESKLKKESLTPLSSELDP----------------EVQKKEEVFFNILEHQDK 154
KT ++KL++ S ELD E+Q+K E + +LE++ K
Sbjct: 722 KTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEVLENKMK 781
Query: 155 TVGLERIYNISDAN-----YRESAEDTQKHDTDEDSQQEYHSAEEQEYISNHLSFDQTKA 209
ER + DA + A+ + K ++ + E + E +E H S+ Q
Sbjct: 782 NAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQ--Q 839
Query: 210 LDISNPEVVELGNSGYEVKCASNVEDNRVNSGSGSIISFDSLDVYGQEESLHVSKFQNSV 269
L+ N E ++ S EV A+ V N+ + +V ++++ +K+
Sbjct: 840 LEAVN-EAIKSYESQIEV-MAAEVAKNKESVNKAQEEVTKQKEVITAQDTVIKAKYAEVA 897
Query: 270 MLREYHDLKHEKYKEQETNSMYH 292
+E ++ K KE + N H
Sbjct: 898 KHKEQNNDSQLKIKELDHNISKH 920
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 37.4 bits (85), Expect = 0.075
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 826 QRDKGYLIHVGGLCPSVSEADLRSHFQKY-QVSEISIYDSTNYR----YASLAFTKNSDA 880
+ D+ + +GGL E L + F KY ++ E+ + +A + F +DA
Sbjct: 3 EADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 881 KIAVKEMNGIEINGKSVNV 899
K A ++MNG ++GK++ V
Sbjct: 63 KAAARDMNGKSLDGKAIKV 81
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 37.0 bits (84), Expect = 0.098
Identities = 53/215 (24%), Positives = 77/215 (35%), Gaps = 55/215 (25%)
Query: 83 SVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQKKE 142
S SQ + E + SE EDS KT E+ L KES L+ E + EV
Sbjct: 479 SCSQKESEEGNPVRGSE-EDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEV---- 533
Query: 143 EVFFNILEHQDKTVGLERIYNISDANYRESAEDTQKHDTDED-SQQEYHSAEEQEYISNH 201
+ES ED + ++DED S+++ E+E+ N
Sbjct: 534 ------------------------GPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENG 569
Query: 202 LSFDQTKALDISNPEVVELGNSGYEVKCASNVEDNRVNSGSGSIISFDSLDVYGQEESLH 261
L D L G E + NV D + F+ G E+ L
Sbjct: 570 LEKD--------------LDEEGSEKELHENVLDKELEENDSENSEFED---DGSEKVLD 612
Query: 262 VSKFQNSVMLREYHDLKHEKYKEQETNSMYHTVFD 296
+ RE+ + EK +E++T Y VFD
Sbjct: 613 EEGSE-----REFDEDSDEKEEEEDT---YEKVFD 639
Score = 32.7 bits (73), Expect = 1.8
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 25/174 (14%)
Query: 24 QKDKPSNPKKENLLLSSNGCDEVKLTFP-DDDWNSSTLEQRANNKEISNIDKMDLLEPFF 82
++D P K+ L N C+E L +DD N + E+ KE D +
Sbjct: 495 EEDSPKKESKKKTL--KNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDC 552
Query: 83 SVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQKKE 142
S Q + +F+ + LE D SE +L + L E D E + E
Sbjct: 553 SEKQSEDGSEREFEENGLEKDLDEEG---------SEKELHENVLDKELEENDSENSEFE 603
Query: 143 EVFFNILEHQDKTVGLERIYNISDANYRESAEDTQKHDTDEDSQQEYHSAEEQE 196
+ G E++ + + + RE ED+ + + +ED+ ++ E E
Sbjct: 604 DD------------GSEKVLD-EEGSEREFDEDSDEKEEEEDTYEKVFDDESDE 644
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 37.0 bits (84), Expect = 0.098
Identities = 53/215 (24%), Positives = 77/215 (35%), Gaps = 55/215 (25%)
Query: 83 SVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQKKE 142
S SQ + E + SE EDS KT E+ L KES L+ E + EV
Sbjct: 479 SCSQKESEEGNPVRGSE-EDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEEV---- 533
Query: 143 EVFFNILEHQDKTVGLERIYNISDANYRESAEDTQKHDTDED-SQQEYHSAEEQEYISNH 201
+ES ED + ++DED S+++ E+E+ N
Sbjct: 534 ------------------------GPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENG 569
Query: 202 LSFDQTKALDISNPEVVELGNSGYEVKCASNVEDNRVNSGSGSIISFDSLDVYGQEESLH 261
L D L G E + NV D + F+ G E+ L
Sbjct: 570 LEKD--------------LDEEGSEKELHENVLDKELEENDSENSEFED---DGSEKVLD 612
Query: 262 VSKFQNSVMLREYHDLKHEKYKEQETNSMYHTVFD 296
+ RE+ + EK +E++T Y VFD
Sbjct: 613 EEGSE-----REFDEDSDEKEEEEDT---YEKVFD 639
Score = 32.7 bits (73), Expect = 1.8
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 25/174 (14%)
Query: 24 QKDKPSNPKKENLLLSSNGCDEVKLTFP-DDDWNSSTLEQRANNKEISNIDKMDLLEPFF 82
++D P K+ L N C+E L +DD N + E+ KE D +
Sbjct: 495 EEDSPKKESKKKTL--KNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDC 552
Query: 83 SVSQDTNTESTQFQSSELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQKKE 142
S Q + +F+ + LE D SE +L + L E D E + E
Sbjct: 553 SEKQSEDGSEREFEENGLEKDLDEEG---------SEKELHENVLDKELEENDSENSEFE 603
Query: 143 EVFFNILEHQDKTVGLERIYNISDANYRESAEDTQKHDTDEDSQQEYHSAEEQE 196
+ G E++ + + + RE ED+ + + +ED+ ++ E E
Sbjct: 604 DD------------GSEKVLD-EEGSEREFDEDSDEKEEEEDTYEKVFDDESDE 644
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 37.0 bits (84), Expect = 0.098
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 826 QRDKGYLIHVGGLCPSVSEADLRSHFQKYQ--VSEISIYDSTNYR---YASLAFTKNSDA 880
+ D+ + +GGL +E L + F KY V + I D + +A + F +DA
Sbjct: 3 EADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
Query: 881 KIAVKEMNGIEINGKSVNV 899
K A ++MNG ++GK++ V
Sbjct: 63 KDAARDMNGKSLDGKAIKV 81
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 37.0 bits (84), Expect = 0.098
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 826 QRDKGYLIHVGGLCPSVSEADLRSHFQKYQ--VSEISIYDSTNYR---YASLAFTKNSDA 880
+ D+ + +GGL +E L + F KY V + I D + +A + F +DA
Sbjct: 3 EADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
Query: 881 KIAVKEMNGIEINGKSVNV 899
K A ++MNG ++GK++ V
Sbjct: 63 KDAARDMNGKSLDGKAIKV 81
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 37.0 bits (84), Expect = 0.098
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 835 VGGLCPSVSEADLRSHFQKY-QVSEISIYDSTNYR----YASLAFTKNSDAKIAVKEMNG 889
+GGL ++ L + F KY Q+ E+ + +A + F + +DAK A ++MNG
Sbjct: 12 IGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMNG 71
Query: 890 IEINGKSVNV 899
++GK++ V
Sbjct: 72 KSLDGKAIKV 81
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 37.0 bits (84), Expect = 0.098
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 835 VGGLCPSVSEADLRSHFQKY-QVSEISIYDSTNYR----YASLAFTKNSDAKIAVKEMNG 889
+GGL ++ L + F KY Q+ E+ + +A + F + +DAK A ++MNG
Sbjct: 12 IGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAARDMNG 71
Query: 890 IEINGKSVNV 899
++GK++ V
Sbjct: 72 KSLDGKAIKV 81
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 37.0 bits (84), Expect = 0.098
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 828 DKGYLIHVGGLCPSVSEADLRSHFQKY-QVSEISIYDSTNYR----YASLAFTKNSDAKI 882
D+G L VGGL +E L F KY Q+SE+ + + + + F DAK
Sbjct: 4 DEGKLF-VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 883 AVKEMNGIEINGKSVNV 899
A+ MNG ++G+ + V
Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 37.0 bits (84), Expect = 0.098
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 816 TGEMKNVEPSQRDKGYLIHVGGLCPSVSEADLRSHFQKY-QVSEISI-YDSTNYR---YA 870
TG N +P+ + V GL +E DLR F +Y +S +++ YD R +A
Sbjct: 109 TGSRANPDPNT-----CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFA 163
Query: 871 SLAFTKNSDAKIAVKEMNGIEINGKSVNV 899
+ F + D+K A++ NG+E++G+ + V
Sbjct: 164 FVYFERIDDSKEAMERANGMELDGRRIRV 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.126 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,236,791
Number of Sequences: 37866
Number of extensions: 1636351
Number of successful extensions: 4873
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 4734
Number of HSP's gapped (non-prelim): 278
length of query: 1052
length of database: 18,247,518
effective HSP length: 113
effective length of query: 939
effective length of database: 13,968,660
effective search space: 13116571740
effective search space used: 13116571740
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.