Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 20336298
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2
[Homo sapiens]
(585 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ... 1159 0.0
gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ... 1159 0.0
gi|38327634 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapi... 192 9e-49
gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapi... 166 4e-41
gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ... 140 3e-33
gi|31542656 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Homo sapi... 135 8e-32
gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo sapi... 135 1e-31
gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sap... 134 2e-31
gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ... 132 9e-31
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 127 3e-29
gi|21071032 DEAD-box protein abstrakt [Homo sapiens] 127 4e-29
gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens] 126 6e-29
gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens] 126 6e-29
gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens] 124 2e-28
gi|188035877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sap... 123 5e-28
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 122 9e-28
gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ... 122 1e-27
gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1... 122 1e-27
gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens] 121 2e-27
gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens] 121 2e-27
gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapi... 114 2e-25
gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sap... 114 3e-25
gi|13129006 nucleolar protein GU2 [Homo sapiens] 113 4e-25
gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... 113 4e-25
gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... 113 4e-25
gi|9506931 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens] 112 9e-25
gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ... 109 8e-24
gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo... 105 9e-23
gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ... 101 2e-21
gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [... 101 2e-21
>gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2
[Homo sapiens]
Length = 585
Score = 1159 bits (2999), Expect = 0.0
Identities = 585/585 (100%), Positives = 585/585 (100%)
Query: 1 MAPDLASQRHSESFPSVNSRPNVILPGREGRREGLPPGGGTRGSLVPTRPVPPSPAPLGT 60
MAPDLASQRHSESFPSVNSRPNVILPGREGRREGLPPGGGTRGSLVPTRPVPPSPAPLGT
Sbjct: 1 MAPDLASQRHSESFPSVNSRPNVILPGREGRREGLPPGGGTRGSLVPTRPVPPSPAPLGT 60
Query: 61 SPYSWSRSGPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPRTF 120
SPYSWSRSGPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPRTF
Sbjct: 61 SPYSWSRSGPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPRTF 120
Query: 121 SRRPPAQASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFS 180
SRRPPAQASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFS
Sbjct: 121 SRRPPAQASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFS 180
Query: 181 PKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPH 240
PKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPH
Sbjct: 181 PKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPH 240
Query: 241 LISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKI 300
LISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKI
Sbjct: 241 LISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKI 300
Query: 301 QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINIL 360
QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINIL
Sbjct: 301 QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINIL 360
Query: 361 ISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVL 420
ISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVL
Sbjct: 361 ISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVL 420
Query: 421 LSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPES 480
LSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPES
Sbjct: 421 LSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPES 480
Query: 481 LKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGA 540
LKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGA
Sbjct: 481 LKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGA 540
Query: 541 PASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
PASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT
Sbjct: 541 PASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
>gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1
[Homo sapiens]
Length = 851
Score = 1159 bits (2999), Expect = 0.0
Identities = 585/585 (100%), Positives = 585/585 (100%)
Query: 1 MAPDLASQRHSESFPSVNSRPNVILPGREGRREGLPPGGGTRGSLVPTRPVPPSPAPLGT 60
MAPDLASQRHSESFPSVNSRPNVILPGREGRREGLPPGGGTRGSLVPTRPVPPSPAPLGT
Sbjct: 1 MAPDLASQRHSESFPSVNSRPNVILPGREGRREGLPPGGGTRGSLVPTRPVPPSPAPLGT 60
Query: 61 SPYSWSRSGPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPRTF 120
SPYSWSRSGPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPRTF
Sbjct: 61 SPYSWSRSGPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPRTF 120
Query: 121 SRRPPAQASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFS 180
SRRPPAQASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFS
Sbjct: 121 SRRPPAQASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFS 180
Query: 181 PKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPH 240
PKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPH
Sbjct: 181 PKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPH 240
Query: 241 LISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKI 300
LISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKI
Sbjct: 241 LISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKI 300
Query: 301 QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINIL 360
QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINIL
Sbjct: 301 QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINIL 360
Query: 361 ISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVL 420
ISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVL
Sbjct: 361 ISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVL 420
Query: 421 LSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPES 480
LSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPES
Sbjct: 421 LSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPES 480
Query: 481 LKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGA 540
LKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGA
Sbjct: 481 LKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGA 540
Query: 541 PASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
PASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT
Sbjct: 541 PASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
>gi|38327634 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo
sapiens]
Length = 670
Score = 192 bits (487), Expect = 9e-49
Identities = 144/449 (32%), Positives = 232/449 (51%), Gaps = 63/449 (14%)
Query: 147 PAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFS---PKKHSVSTSDRNQEERQCIKTSS 203
P K T+ A ++S E+++ K +KM + P T ++ + E + +T+
Sbjct: 87 PQKSTVLTNGEAAMQSSNSESKKK-KKKKRKMVNDAEPDTKKAKTENKGKSEEESAETTK 145
Query: 204 LFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHP--HLIS--TINTVLKM--SSMTSV 257
+NN + P+ + + + AF + +L++ T+ + +M ++MT +
Sbjct: 146 ETENNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEI 205
Query: 258 QKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTREL 317
Q +SI LLEGRD L ++TGSGKTLA+ IP V+ + ++ + +G L+L PTREL
Sbjct: 206 QHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--VKLRFMPRNGTGVLILSPTREL 263
Query: 318 ALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNI 377
A+Q+F +++L+ G++MGG R +E +L GINI+++TPGRL+DH+++T
Sbjct: 264 AMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGF 322
Query: 378 HFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISL 437
+ L+ LV DEADRILD+GFE+++ I+ + +RQ +L SAT T V LA ISL
Sbjct: 323 MYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT---RRQTMLFSATQTRKVEDLARISL 379
Query: 438 -HDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVC 496
+P+ + V D DKA V + L+Q V PS+ R +
Sbjct: 380 KKEPLYVGVDD---------DKANATV---------------DGLEQGYVVCPSEKRFLL 415
Query: 497 LAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFL 556
L F+ K +K++VFFSSC V++HY L + L L
Sbjct: 416 LFTFL----KKNRKKKLMVFFSSCMSVKYHYELL------------------NYIDLPVL 453
Query: 557 RLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
+HG +Q +RT F +F ++ G LLCT
Sbjct: 454 AIHGKQKQNKRTTTFFQFCNADSGTLLCT 482
>gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo
sapiens]
Length = 875
Score = 166 bits (421), Expect = 4e-41
Identities = 112/332 (33%), Positives = 180/332 (54%), Gaps = 51/332 (15%)
Query: 254 MTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVP 313
+T +QKQ+I + L+G+D L ++TGSGKTLA+ +PV+++L ++ +DG L++ P
Sbjct: 92 VTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT--STDGLGVLIISP 149
Query: 314 TRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKS 373
TRELA Q+F+ ++K+ K + G+++GG+ K E R+ INIL+ TPGRL+ H+
Sbjct: 150 TRELAYQTFEVLRKVGKNHDFSA-GLIIGGKDLKHEAERINN-INILVCTPGRLLQHMDE 207
Query: 374 TKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLA 433
T + H + L+ LV DEADRILD+GF + ++ + +KRQ +L SAT T+ V LA
Sbjct: 208 TVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP---KKRQTLLFSATQTKSVKDLA 264
Query: 434 DISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLR 493
+SL +P + V +K+ ++ P +L+Q+ V + +
Sbjct: 265 RLSLKNPEYVWVHEKA------------------------KYSTPATLEQNYIVCELQQK 300
Query: 494 LVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRL 553
+ L +F+ K +K +VFFSSC+ V++ Y +F + P S+
Sbjct: 301 ISVLYSFLRSHLK----KKSIVFFSSCKEVQYLYRVFCRL------------RPGVSI-- 342
Query: 554 KFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
L LHG +Q R V+ EF R VL T
Sbjct: 343 --LALHGRQQQMRRMEVYNEFVRKRAAVLFAT 372
>gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Homo sapiens]
Length = 455
Score = 140 bits (353), Expect = 3e-33
Identities = 108/373 (28%), Positives = 181/373 (48%), Gaps = 64/373 (17%)
Query: 213 ELHRPVVKQVQEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDAL 272
E +P+V++ + K F +LG+ L + L + T +Q ++IP+ L+GRD +
Sbjct: 12 EASQPIVEEEETKTFK-----DLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDII 65
Query: 273 VRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPF 332
++TGSGKT A+ +P++ +L ++ +ALVL PTRELA Q + + L
Sbjct: 66 GLAETGSGKTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSI 119
Query: 333 TWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADR 392
+ V++GG S+ L K +I+I+TPGRL+DH+++TK + L++LV DEADR
Sbjct: 120 G-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 178
Query: 393 ILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQ 452
IL++ FE ++ IL + + R+ L SAT+T+ V +L +L +PV +V K
Sbjct: 179 ILNMDFETEVDKILKVIPRD---RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK---- 231
Query: 453 LNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQK 512
+ E L+Q+ +PSK + L +IL +
Sbjct: 232 ----------------------YQTVEKLQQYYIFIPSKFKDTYL-VYILNEL---AGNS 265
Query: 513 MVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQ 572
++F S+C + +L L+ L ++ + LHG M Q +R
Sbjct: 266 FMIFCSTCNNTQ-RTALLLRNLGFTA-----------------IPLHGQMSQSKRLGSLN 307
Query: 573 EFSHSRRGVLLCT 585
+F R +LL T
Sbjct: 308 KFKAKARSILLAT 320
>gi|31542656 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Homo
sapiens]
Length = 483
Score = 135 bits (341), Expect = 8e-32
Identities = 110/359 (30%), Positives = 169/359 (47%), Gaps = 58/359 (16%)
Query: 230 AAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPV 289
A F ELGL L+ L + T VQ IP +LEGRD L ++TGSGKT A+ +P+
Sbjct: 2 AGFAELGLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI 60
Query: 290 VQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSE 349
+Q L + G + LVL PTRELA Q + + L KP + +++GG ++
Sbjct: 61 LQKLS------EDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVAQ 113
Query: 350 KARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLG---FEKDITVIL 406
L + +++I+TPGRL DH++S+ ++R+LV DEADR+L+ G F D+ IL
Sbjct: 114 ALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAIL 173
Query: 407 NAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPP 466
AV A +RQ +L SATLT+ + L ++ + P E P
Sbjct: 174 AAVPA---RRQTLLFSATLTDTLRELQGLATNQPF------------------FWEAQAP 212
Query: 467 PAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFH 526
+ E L Q +VP K++ L I + ED +++F ++C+ +
Sbjct: 213 --------VSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQ-- 262
Query: 527 YSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
L +L P + LH M+Q+ER A +F S +L+ T
Sbjct: 263 ---ILCMMLRKFSFPT-------------VALHSMMKQKERFAALAKFKSSIYRILIAT 305
>gi|41327779 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo
sapiens]
Length = 600
Score = 135 bits (339), Expect = 1e-31
Identities = 107/355 (30%), Positives = 173/355 (48%), Gaps = 51/355 (14%)
Query: 237 LHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAM 296
LHP ++ + L MT VQ +IP+ + +D + TGSGKTLA+ IP+++ L
Sbjct: 16 LHPQVLGALRE-LGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRR 74
Query: 297 ESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLR-K 355
E K+++S A+++ PTRELA+Q + + K F + +GG + R + +
Sbjct: 75 EEKLKKSQ-VGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQ 133
Query: 356 GINILISTPGRLVDHI-KSTKNIHFS----RLRWLVFDEADRILDLGFEKDITVILNAVN 410
G NI+++TPGRL D + + + + L LV DEADR+LD+GFE I IL +
Sbjct: 134 GGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLP 193
Query: 411 AECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGD 470
++R+ L SAT T+ V L L +PV +SV K+K V
Sbjct: 194 ---KQRRTGLFSATQTQEVENLVRAGLRNPVRVSV----------KEKGVA--------- 231
Query: 471 KLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLF 530
+ P L+ + V + + L F+ + + +K +VFFS+C VE+ Y
Sbjct: 232 ASSAQKTPSRLENYYMVCKADEKFNQLVHFL----RNHKQEKHLVFFSTCACVEY-YGKA 286
Query: 531 LQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
L+ L+ +K + +HG M+ +R +F EF + G+L+CT
Sbjct: 287 LEVLVKG---------------VKIMCIHGKMKY-KRNKIFMEFRKLQSGILVCT 325
>gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo
sapiens]
Length = 796
Score = 134 bits (338), Expect = 2e-31
Identities = 98/324 (30%), Positives = 163/324 (50%), Gaps = 23/324 (7%)
Query: 122 RRPPAQASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFSP 181
R+ ++AK+ K + + ++ + E ++ S E T +A +
Sbjct: 125 RKKRKTEDKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSEDEASETDYSSADENILT 184
Query: 182 KKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHL 241
K ++ DR +++++ + F++ E + +F ++ L L
Sbjct: 185 KADTLKVKDRKKKKKKGQEAGGFFEDASQYDE---------------NLSFQDMNLSRPL 229
Query: 242 ISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQ 301
+ I T + T +QK IPV L G+D + TG+GKT A+ +PV L+ + K +
Sbjct: 230 LKAI-TAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPV---LERLIYKPR 285
Query: 302 RSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILI 361
++ LVLVPTREL +Q +V + L F I + +GG KS++A LR +ILI
Sbjct: 286 QAPVTRVLVLVPTRELGIQ-VHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILI 344
Query: 362 STPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLL 421
+TPGRL+DH+ + + H S + L+ DEADR+LD FE+ + I+ + RQ +L
Sbjct: 345 ATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCS---HHRQTMLF 401
Query: 422 SATLTEGVTRLADISLHDPVSISV 445
SAT+T+ V LA +SL +PV I V
Sbjct: 402 SATMTDEVKDLASVSLKNPVRIFV 425
>gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
[Homo sapiens]
Length = 406
Score = 132 bits (332), Expect = 9e-31
Identities = 82/236 (34%), Positives = 136/236 (57%), Gaps = 16/236 (6%)
Query: 213 ELHRPVVKQVQEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDAL 272
E +P+V++ + K F +LG+ L + L + T +Q ++IP+ L+GRD +
Sbjct: 12 EASQPIVEEEETKTFK-----DLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDII 65
Query: 273 VRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPF 332
++TGSGKT A+ +P++ +L ++ +ALVL PTRELA Q + + L
Sbjct: 66 GLAETGSGKTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSI 119
Query: 333 TWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADR 392
+ V++GG S+ L K +I+I+TPGRL+DH+++TK + L++LV DEADR
Sbjct: 120 G-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 178
Query: 393 ILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDK 448
IL++ FE ++ IL + + R+ L SAT+T+ V +L +L +PV +V K
Sbjct: 179 ILNMDFETEVDKILKVIPRD---RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK 231
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 127 bits (319), Expect = 3e-29
Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 31/254 (12%)
Query: 231 AFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 290
++ + L PH++ I+ T +Q+Q+IP+ L+ RD + ++TGSGKT A+ IP++
Sbjct: 392 SWKDSSLPPHILEVIDKC-GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL 450
Query: 291 QSLQAME--SKIQRSD-GPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRK 347
+ + +I+ SD GPYA++L PTRELA Q + K KP I ++GG R+
Sbjct: 451 VWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPL-GIRTVAVIGGISRE 509
Query: 348 SEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILN 407
+ RLR G I+I+TPGRL+D + + + SR ++V DEADR++D+GFE D+ IL
Sbjct: 510 DQGFRLRMGCEIVIATPGRLID-VLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 568
Query: 408 AVNAECQK-----------------------RQNVLLSATLTEGVTRLADISLHDP--VS 442
+ QK RQ V+ +AT+ V RLA L P V
Sbjct: 569 HMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVY 628
Query: 443 ISVLDKSHDQLNPK 456
I K H+++ K
Sbjct: 629 IGSAGKPHERVEQK 642
>gi|21071032 DEAD-box protein abstrakt [Homo sapiens]
Length = 622
Score = 127 bits (318), Expect = 4e-29
Identities = 121/474 (25%), Positives = 211/474 (44%), Gaps = 93/474 (19%)
Query: 131 QAKATKRKYQASSEAPPAKRRNETSFLPAKKT------SVKETQR--TFKGNAQKMFSPK 182
Q + K K +A E+ K+ E + SVKE + T+ + ++P
Sbjct: 90 QHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPP 149
Query: 183 KHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHEL---GLHP 239
++ +S S+ E + K + IP P +K +E F +A L G+H
Sbjct: 150 RYVLSMSEERHERVR--KKYHILVEGDGIP----PPIKSFKEMKFPAAILRGLKKKGIH- 202
Query: 240 HLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESK 299
T +Q Q IP +L GRD + + TGSGKTL + +PV+ E +
Sbjct: 203 -------------HPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR 249
Query: 300 I--QRSDGPYALVLVPTRELALQSFDTVQ---KLLKPFT--WIVPGVLMGGEKRKSEKAR 352
+ + +GPY L++ P+RELA Q+ ++ +LL+ + + + +GG K +
Sbjct: 250 LPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMET 309
Query: 353 LRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAE 412
+R G++++++TPGRL+D ++ K + R+L DEADR++D+GFE DI I + +
Sbjct: 310 IRHGVHMMVATPGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQ 368
Query: 413 CQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKL 472
RQ +L SAT+ + + A +L PV+I+V L+ +QEV
Sbjct: 369 ---RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLD----VIQEV--------- 412
Query: 473 DSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFF-SSCELVEFHYSLFL 531
E +K+ +V L +C + +++F ++ H L L
Sbjct: 413 ------EYVKEEAKMV------------YLLECLQKTPPPVLIFAEKKADVDAIHEYLLL 454
Query: 532 QTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
+ ++ + +HGG +QEERT + F ++ VL+ T
Sbjct: 455 K-------------------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489
>gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens]
Length = 731
Score = 126 bits (316), Expect = 6e-29
Identities = 106/362 (29%), Positives = 168/362 (46%), Gaps = 65/362 (17%)
Query: 231 AFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 290
AFH P + + + T +Q Q P+ L GRD + +QTGSGKTLAY +P +
Sbjct: 172 AFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 230
Query: 291 QSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPF---TWIVPGVLMGGEKRK 347
+ + ++R DGP LVL PTRELA Q VQ++ + + + + GG +
Sbjct: 231 VHIN-HQPYLERGDGPICLVLAPTRELAQQ----VQQVADDYGKCSRLKSTCIYGGAPKG 285
Query: 348 SEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILN 407
+ L +G+ I I+TPGRL+D ++S K + R +LV DEADR+LD+GFE I I++
Sbjct: 286 PQIRDLERGVEICIATPGRLIDFLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVD 344
Query: 408 AVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISV----LDKSHDQLNPKDKAVQEV 463
+ + RQ ++ SAT + V +LA+ L D I+V L +H+ L + +V
Sbjct: 345 QIRPD---RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQ-----IVDV 396
Query: 464 CPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELV 523
C ES K H + ++++ E++ K ++F +
Sbjct: 397 C-------------MESEKDHKLIQ------------LMEEIMAEKENKTIIFVETKRRC 431
Query: 524 EFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLL 583
+ L + G PA + +HG Q ER V EF + +L+
Sbjct: 432 D-----DLTRRMRRDGWPA-------------MCIHGDKSQPERDWVLNEFRSGKAPILI 473
Query: 584 CT 585
T
Sbjct: 474 AT 475
>gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens]
Length = 729
Score = 126 bits (316), Expect = 6e-29
Identities = 106/362 (29%), Positives = 168/362 (46%), Gaps = 65/362 (17%)
Query: 231 AFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 290
AFH P + + + T +Q Q P+ L GRD + +QTGSGKTLAY +P +
Sbjct: 172 AFHHANF-PQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 230
Query: 291 QSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPF---TWIVPGVLMGGEKRK 347
+ + ++R DGP LVL PTRELA Q VQ++ + + + + GG +
Sbjct: 231 VHIN-HQPYLERGDGPICLVLAPTRELAQQ----VQQVADDYGKCSRLKSTCIYGGAPKG 285
Query: 348 SEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILN 407
+ L +G+ I I+TPGRL+D ++S K + R +LV DEADR+LD+GFE I I++
Sbjct: 286 PQIRDLERGVEICIATPGRLIDFLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVD 344
Query: 408 AVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISV----LDKSHDQLNPKDKAVQEV 463
+ + RQ ++ SAT + V +LA+ L D I+V L +H+ L + +V
Sbjct: 345 QIRPD---RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQ-----IVDV 396
Query: 464 CPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELV 523
C ES K H + ++++ E++ K ++F +
Sbjct: 397 C-------------MESEKDHKLIQ------------LMEEIMAEKENKTIIFVETKRRC 431
Query: 524 EFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLL 583
+ L + G PA + +HG Q ER V EF + +L+
Sbjct: 432 D-----DLTRRMRRDGWPA-------------MCIHGDKSQPERDWVLNEFRSGKAPILI 473
Query: 584 CT 585
T
Sbjct: 474 AT 475
>gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
Length = 614
Score = 124 bits (311), Expect = 2e-28
Identities = 99/335 (29%), Positives = 159/335 (47%), Gaps = 58/335 (17%)
Query: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
T++Q Q PV L G D + +QTGSGKTL+Y +P + + + ++R DGP LVL PT
Sbjct: 118 TAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN-HQPFLERGDGPICLVLAPT 176
Query: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKST 374
RELA Q + + + + GG + + L +G+ I I+TPGRL+D ++
Sbjct: 177 RELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 235
Query: 375 KNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLAD 434
K + R +LV DEADR+LD+GFE I I++ + + RQ ++ SAT + V +LA+
Sbjct: 236 KT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD---RQTLMWSATWPKEVRQLAE 291
Query: 435 ISLHDPVSISV----LDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPS 490
L D + I++ L +H+ L + +VC D+
Sbjct: 292 DFLKDYIHINIGALELSANHNILQ-----IVDVCHDVEKDE------------------- 327
Query: 491 KLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSAS 550
+L+ L +++ E++ K +VF + + L + G PA G
Sbjct: 328 --KLIRL----MEEIMSEKENKTIVFVETKRRCD-----ELTRKMRRDGWPAMG------ 370
Query: 551 MRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
+HG Q+ER V EF H + +L+ T
Sbjct: 371 -------IHGDKSQQERDWVLNEFKHGKAPILIAT 398
>gi|188035877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo
sapiens]
Length = 619
Score = 123 bits (308), Expect = 5e-28
Identities = 90/287 (31%), Positives = 149/287 (51%), Gaps = 26/287 (9%)
Query: 172 KGNAQKMFSPKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAA 231
K K+ +P+K + E + S ++K +P I L ++ +++++
Sbjct: 142 KEEKSKLSNPQK-------ADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQ 194
Query: 232 FHELGL------HPHLISTINTVLKMSSM---TSVQKQSIPVLLEGRDALVRSQTGSGKT 282
E+ H L +N LK S T +Q Q IPV L GRD L + TGSGKT
Sbjct: 195 GQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKT 254
Query: 283 LAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMG 342
A+ +PV+ ESK P AL+L PTRELA+Q ++L+ + +L+G
Sbjct: 255 AAFLLPVIMRA-LFESKT-----PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVG 308
Query: 343 GEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDI 402
G + RL++ + ++I+TPGRL+D IK + ++ ++ +V DEAD +L +GF++ +
Sbjct: 309 GLPLPPQLYRLQQHVKVIIATPGRLLDIIKQS-SVELCGVKIVVVDEADTMLKMGFQQQV 367
Query: 403 TVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKS 449
IL + +C Q +L+SAT+ + +LA LH+PV I +K+
Sbjct: 368 LDILENIPNDC---QTILVSATIPTSIEQLASQLLHNPVRIITGEKN 411
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 122 bits (306), Expect = 9e-28
Identities = 89/333 (26%), Positives = 159/333 (47%), Gaps = 54/333 (16%)
Query: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
T +Q Q+IP ++ GRD + ++TGSGKT+A+ +P+ + + S ++ +GP A+++ PT
Sbjct: 396 TPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGEGPIAVIMTPT 454
Query: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHI--K 372
RELALQ +K K V V GG + A L++G I++ TPGR++D +
Sbjct: 455 RELALQITKECKKFSKTLGLRVVCV-YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAAN 513
Query: 373 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRL 432
S + + R+ ++V DEADR+ D+GFE + I++ V + RQ V+ SAT + L
Sbjct: 514 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD---RQTVMFSATFPRAMEAL 570
Query: 433 ADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKL 492
A L P+ + V +S + ++Q V V+ +
Sbjct: 571 ARRILSKPIEVQVGGRS--------------------------VVCSDVEQQVIVIEEEK 604
Query: 493 RLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMR 552
+ + L + ++E +++F E H L+ L+ +S
Sbjct: 605 KFLKLLELL---GHYQESGSVIIFVDKQE----HADGLLKDLMRAS-------------- 643
Query: 553 LKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
+ LHGG++Q +R ++ +F + +L+ T
Sbjct: 644 YPCMSLHGGIDQYDRDSIINDFKNGTCKLLVAT 676
>gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2
[Homo sapiens]
Length = 881
Score = 122 bits (305), Expect = 1e-27
Identities = 83/256 (32%), Positives = 143/256 (55%), Gaps = 14/256 (5%)
Query: 210 DIPELHRPVVKQVQEKVFTSAAFHELGL-HPHLISTINTVLKMSSMTSVQKQSIPVLLEG 268
D+ R +V+ +K S F +GL +P + K+ T +Q+++IPV+L+G
Sbjct: 76 DVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVP--TPIQRKTIPVILDG 133
Query: 269 RDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKL 328
+D + ++TGSGKT + +P+ + L+ ++ G AL+L PTRELALQ+ ++L
Sbjct: 134 KDVVAMARTGSGKTACFLLPMFERLKTHSAQ----TGARALILSPTRELALQTLKFTKEL 189
Query: 329 LKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFD 388
K FT + +++GG++ + + A L + +I+I+TPGRLV H+ ++ + ++VFD
Sbjct: 190 GK-FTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFD 247
Query: 389 EADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSI--SVL 446
EADR+ ++GF + + I+ + Q VL SATL + + A L +PV I V
Sbjct: 248 EADRLFEMGFAEQLQEIIARLPG---GHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVD 304
Query: 447 DKSHDQLNPKDKAVQE 462
K ++QL V+E
Sbjct: 305 TKLNEQLKTSFFLVRE 320
>gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1
[Homo sapiens]
Length = 882
Score = 122 bits (305), Expect = 1e-27
Identities = 83/256 (32%), Positives = 143/256 (55%), Gaps = 14/256 (5%)
Query: 210 DIPELHRPVVKQVQEKVFTSAAFHELGL-HPHLISTINTVLKMSSMTSVQKQSIPVLLEG 268
D+ R +V+ +K S F +GL +P + K+ T +Q+++IPV+L+G
Sbjct: 76 DVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVP--TPIQRKTIPVILDG 133
Query: 269 RDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKL 328
+D + ++TGSGKT + +P+ + L+ ++ G AL+L PTRELALQ+ ++L
Sbjct: 134 KDVVAMARTGSGKTACFLLPMFERLKTHSAQ----TGARALILSPTRELALQTLKFTKEL 189
Query: 329 LKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFD 388
K FT + +++GG++ + + A L + +I+I+TPGRLV H+ ++ + ++VFD
Sbjct: 190 GK-FTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFD 247
Query: 389 EADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSI--SVL 446
EADR+ ++GF + + I+ + Q VL SATL + + A L +PV I V
Sbjct: 248 EADRLFEMGFAEQLQEIIARLPG---GHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVD 304
Query: 447 DKSHDQLNPKDKAVQE 462
K ++QL V+E
Sbjct: 305 TKLNEQLKTSFFLVRE 320
>gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 121 bits (303), Expect = 2e-27
Identities = 77/215 (35%), Positives = 121/215 (56%), Gaps = 9/215 (4%)
Query: 230 AAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPV 289
++F G L+ I + + T +Q Q +PV L GRD + ++TGSGKT A+ P+
Sbjct: 253 SSFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPM 311
Query: 290 VQSLQAMESK-IQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKS 348
+ + M+ K ++ DGP A+++ PTREL Q ++ K + V GG +
Sbjct: 312 L--IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQ 369
Query: 349 EKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA 408
KA L++G I++ TPGRL+DH+K K + R+ +LVFDEADR+ D+GFE + I +
Sbjct: 370 AKA-LQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 409 VNAECQKRQNVLLSATLTEGVTRLADISLHDPVSI 443
V + RQ +L SAT + + +LA L DP+ +
Sbjct: 428 VRPD---RQTLLFSATFRKKIEKLARDILIDPIRV 459
>gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 121 bits (303), Expect = 2e-27
Identities = 77/215 (35%), Positives = 121/215 (56%), Gaps = 9/215 (4%)
Query: 230 AAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPV 289
++F G L+ I + + T +Q Q +PV L GRD + ++TGSGKT A+ P+
Sbjct: 253 SSFAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPM 311
Query: 290 VQSLQAMESK-IQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKS 348
+ + M+ K ++ DGP A+++ PTREL Q ++ K + V GG +
Sbjct: 312 L--IHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQ 369
Query: 349 EKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA 408
KA L++G I++ TPGRL+DH+K K + R+ +LVFDEADR+ D+GFE + I +
Sbjct: 370 AKA-LQEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASH 427
Query: 409 VNAECQKRQNVLLSATLTEGVTRLADISLHDPVSI 443
V + RQ +L SAT + + +LA L DP+ +
Sbjct: 428 VRPD---RQTLLFSATFRKKIEKLARDILIDPIRV 459
>gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo
sapiens]
Length = 631
Score = 114 bits (286), Expect = 2e-25
Identities = 75/208 (36%), Positives = 118/208 (56%), Gaps = 7/208 (3%)
Query: 238 HPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAME 297
+P L+ +I V + T +Q Q+ P++L+G D +V +QTG+GKTL+Y +P L +
Sbjct: 230 YPDLLKSIIRV-GIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQP 288
Query: 298 SKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGI 357
++ +GP LVL PTRELAL K + + + GG R + + KG+
Sbjct: 289 ISREQRNGPGMLVLTPTRELALHVEAECSKY--SYKGLKSICIYGGRNRNGQIEDISKGV 346
Query: 358 NILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQ 417
+I+I+TPGRL D ++ +++ + +LV DEAD++LD+ FE I IL V + RQ
Sbjct: 347 DIIIATPGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPD---RQ 402
Query: 418 NVLLSATLTEGVTRLADISLHDPVSISV 445
V+ SAT + V +LA L DP+ + V
Sbjct: 403 TVMTSATWPDTVRQLALSYLKDPMIVYV 430
>gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo
sapiens]
Length = 648
Score = 114 bits (284), Expect = 3e-25
Identities = 99/333 (29%), Positives = 152/333 (45%), Gaps = 56/333 (16%)
Query: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
T +Q Q+ P++L+G D + +QTG+GKTL Y +P L S + + P LVL PT
Sbjct: 266 TPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPT 325
Query: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKST 374
RELALQ K + + + GG R + L+KG++I+I+TPGRL D ++ +
Sbjct: 326 RELALQVEGECCKY--SYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLND-LQMS 382
Query: 375 KNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLAD 434
++ + +LV DEAD++LD+GFE I IL V + RQ V+ SAT V RLA
Sbjct: 383 NFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD---RQTVMTSATWPHSVHRLAQ 439
Query: 435 ISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRL 494
L +P+ + V LD A+ S+KQ++ V + +
Sbjct: 440 SYLKEPMIVYV------------------------GTLDLVAV-SSVKQNIIVTTEEEKW 474
Query: 495 VCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYS--LFLQTLLSSSGAPASGQLPSASMR 552
+ F+ ++ V+ F S + V H S L L + S
Sbjct: 475 SHMQTFLQSMSSTDK----VIVFVSRKAVADHLSSDLILGNISVES-------------- 516
Query: 553 LKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
LHG EQ +R + F + +L+ T
Sbjct: 517 -----LHGDREQRDREKALENFKTGKVRILIAT 544
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 113 bits (283), Expect = 4e-25
Identities = 92/331 (27%), Positives = 165/331 (49%), Gaps = 38/331 (11%)
Query: 126 AQASRQAKATKRK---YQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFS-- 180
+Q + K+ +RK + S E + T L A K + + G+ ++ F+
Sbjct: 22 SQKKERQKSDRRKSRHHYDSDEKSETRENGVTDDLDAPKAKKSKMKEKLNGDTEEGFNRL 81
Query: 181 ---------PKKHSVSTSDRNQEERQCIKTSSLFKNNPDIPE--LHRPVVKQVQEKVFTS 229
++ + D ++ E++ + SSL + + L + ++ +E F++
Sbjct: 82 SDEFSKSHKSRRKDLPNGDIDEYEKKSKRVSSLDTSTHKSSDNKLEETLTREQKEGAFSN 141
Query: 230 AAFHELGLHPHLISTINTVLKMSSMT---SVQKQSIPVLLEGRDALVRSQTGSGKTLAYC 286
E TI +LK +T +Q ++ + EG+D + +++TG+GKT ++
Sbjct: 142 FPISE--------ETIK-LLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFA 192
Query: 287 IPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFT-WIVPGVLMGGEK 345
IP+++ LQ + I++S P LVL PTRELA Q V K K T + GG
Sbjct: 193 IPLIERLQRNQETIKKSRSPKVLVLAPTRELANQ----VAKDFKDITRKLSVACFYGGTS 248
Query: 346 RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVI 405
+S+ +R GI+IL+ TPGR+ DH++S + + S+LR +V DE D++LDLGF + + I
Sbjct: 249 YQSQINHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAEQVEDI 307
Query: 406 LN---AVNAECQKRQNVLLSATLTEGVTRLA 433
++ ++E Q +L SAT + V ++A
Sbjct: 308 IHESYKTDSE-DNPQTLLFSATCPQWVYKVA 337
>gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
[Homo sapiens]
Length = 724
Score = 113 bits (283), Expect = 4e-25
Identities = 106/373 (28%), Positives = 170/373 (45%), Gaps = 29/373 (7%)
Query: 68 SGPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPRTFSRRPPAQ 127
SGP R GG GS R RG G GS + P + M G LF SRRP
Sbjct: 142 SGPYRRGGRGSFRGCRGGFGL-----GSPNNDLDPDECMQRT-GGLFG-----SRRPVLS 190
Query: 128 ASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFSPKKHSVS 187
+ ++ + + SE K NE + K S K G + PK +
Sbjct: 191 GTGNGDTSQSRSGSGSERGGYKGLNEEVITGSGKNSWKSEAEG--GESSDTQGPKVTYIP 248
Query: 188 TSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHLISTINT 247
E+ + ++ + + +V+ + E +L T+N
Sbjct: 249 PPPPEDED----SIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFE---EANLCQTLNN 301
Query: 248 VLKMSS---MTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQ---AMESKIQ 301
+ + +T VQK SIP++L GRD + +QTGSGKT A+ +P++ + S+ +
Sbjct: 302 NIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFK 361
Query: 302 RSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILI 361
P +++ PTREL Q + +K T + V+ GG + ++ +G NIL
Sbjct: 362 ELQEPECIIVAPTRELVNQIYLEARK-FSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILC 420
Query: 362 STPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAEC-QKRQNVL 420
+TPGRL+D I K I ++++LV DEADR+LD+GF ++ +++ ++RQ ++
Sbjct: 421 ATPGRLMDIIGKEK-IGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLM 479
Query: 421 LSATLTEGVTRLA 433
SAT E + RLA
Sbjct: 480 FSATFPEEIQRLA 492
>gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
[Homo sapiens]
Length = 724
Score = 113 bits (283), Expect = 4e-25
Identities = 106/373 (28%), Positives = 170/373 (45%), Gaps = 29/373 (7%)
Query: 68 SGPGRGGGAGSSRVPRGVPGPAVCAPGSLLHHASPTQTMAAADGSLFDNPRTFSRRPPAQ 127
SGP R GG GS R RG G GS + P + M G LF SRRP
Sbjct: 142 SGPYRRGGRGSFRGCRGGFGL-----GSPNNDLDPDECMQRT-GGLFG-----SRRPVLS 190
Query: 128 ASRQAKATKRKYQASSEAPPAKRRNETSFLPAKKTSVKETQRTFKGNAQKMFSPKKHSVS 187
+ ++ + + SE K NE + K S K G + PK +
Sbjct: 191 GTGNGDTSQSRSGSGSERGGYKGLNEEVITGSGKNSWKSEAEG--GESSDTQGPKVTYIP 248
Query: 188 TSDRNQEERQCIKTSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHLISTINT 247
E+ + ++ + + +V+ + E +L T+N
Sbjct: 249 PPPPEDED----SIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFE---EANLCQTLNN 301
Query: 248 VLKMSS---MTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQ---AMESKIQ 301
+ + +T VQK SIP++L GRD + +QTGSGKT A+ +P++ + S+ +
Sbjct: 302 NIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFK 361
Query: 302 RSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILI 361
P +++ PTREL Q + +K T + V+ GG + ++ +G NIL
Sbjct: 362 ELQEPECIIVAPTRELVNQIYLEARK-FSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILC 420
Query: 362 STPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAEC-QKRQNVL 420
+TPGRL+D I K I ++++LV DEADR+LD+GF ++ +++ ++RQ ++
Sbjct: 421 ATPGRLMDIIGKEK-IGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLM 479
Query: 421 LSATLTEGVTRLA 433
SAT E + RLA
Sbjct: 480 FSATFPEEIQRLA 492
>gi|9506931 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
Length = 547
Score = 112 bits (280), Expect = 9e-25
Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 22/224 (9%)
Query: 232 FHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQ 291
F +GL P L+ + T L S T +Q+++IP+ LEG+D L R++TGSGKT AY IP++Q
Sbjct: 9 FEHMGLDPRLLQAV-TDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 292 SLQAMESKIQRSDGPY------ALVLVPTRELALQSFDTVQKLLKPFTWIVPGV----LM 341
L +++ GP LVLVPT+ELA Q+ +Q+L T+ V +
Sbjct: 68 LLLH-----RKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLA---TYCARDVRVANVS 119
Query: 342 GGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKD 401
E S++A L + ++++ TP R++ H++ L LV DEAD + GFE++
Sbjct: 120 AAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEE 179
Query: 402 ITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISV 445
+ +L + + Q L+SAT E V L ++ LH+PV++ +
Sbjct: 180 LKSLLCHLP---RIYQAFLMSATFNEDVQALKELILHNPVTLKL 220
>gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
[Homo sapiens]
Length = 690
Score = 109 bits (272), Expect = 8e-24
Identities = 66/186 (35%), Positives = 108/186 (58%), Gaps = 6/186 (3%)
Query: 252 SSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQ---AMESKIQRSDGPYA 308
+ +T VQK SIP++L GRD + +QTGSGKT A+ +P++ + S+ + P
Sbjct: 275 TKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPEC 334
Query: 309 LVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLV 368
+++ PTREL Q + +K T + V+ GG + ++ +G NIL +TPGRL+
Sbjct: 335 IIVAPTRELVNQIYLEARK-FSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLM 393
Query: 369 DHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAEC-QKRQNVLLSATLTE 427
D I K I ++++LV DEADR+LD+GF ++ +++ ++RQ ++ SAT E
Sbjct: 394 DIIGKEK-IGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPE 452
Query: 428 GVTRLA 433
+ RLA
Sbjct: 453 EIQRLA 458
>gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo
sapiens]
Length = 662
Score = 105 bits (263), Expect = 9e-23
Identities = 72/204 (35%), Positives = 116/204 (56%), Gaps = 15/204 (7%)
Query: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV---------QSLQAMESK---IQR 302
T VQK +IP++ E RD + +QTGSGKT A+ +P++ ++L+AM+ +R
Sbjct: 204 TPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRR 263
Query: 303 SDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILIS 362
P +LVL PTRELA+Q ++ +K + + P V+ GG + L +G ++L++
Sbjct: 264 KQYPISLVLAPTRELAVQIYEEARK-FSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 322
Query: 363 TPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQ-KRQNVLL 421
TPGRLVD ++ K I ++LV DEADR+LD+GFE I I+ + R ++
Sbjct: 323 TPGRLVDMMERGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 381
Query: 422 SATLTEGVTRLADISLHDPVSISV 445
SAT + + LA L + + ++V
Sbjct: 382 SATFPKEIQMLARDFLDEYIFLAV 405
>gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 101 bits (252), Expect = 2e-21
Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 15/204 (7%)
Query: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV---------QSLQAMESK---IQR 302
T VQK +IP++ RD + +QTGSGKT A+ +P++ ++L+A++ +R
Sbjct: 202 TPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRR 261
Query: 303 SDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILIS 362
P +LVL PTRELA+Q ++ +K + + P V+ GG + L +G ++L++
Sbjct: 262 KQYPISLVLAPTRELAVQIYEEARK-FSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 320
Query: 363 TPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQ-KRQNVLL 421
TPGRLVD ++ K I ++LV DEADR+LD+GFE I I+ + R ++
Sbjct: 321 TPGRLVDMMERGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 379
Query: 422 SATLTEGVTRLADISLHDPVSISV 445
SAT + + LA L + + ++V
Sbjct: 380 SATFPKEIQMLARDFLDEYIFLAV 403
>gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 101 bits (252), Expect = 2e-21
Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 15/204 (7%)
Query: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV---------QSLQAMESK---IQR 302
T VQK +IP++ RD + +QTGSGKT A+ +P++ ++L+A++ +R
Sbjct: 202 TPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRR 261
Query: 303 SDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILIS 362
P +LVL PTRELA+Q ++ +K + + P V+ GG + L +G ++L++
Sbjct: 262 KQYPISLVLAPTRELAVQIYEEARK-FSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVA 320
Query: 363 TPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQ-KRQNVLL 421
TPGRLVD ++ K I ++LV DEADR+LD+GFE I I+ + R ++
Sbjct: 321 TPGRLVDMMERGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMF 379
Query: 422 SATLTEGVTRLADISLHDPVSISV 445
SAT + + LA L + + ++V
Sbjct: 380 SATFPKEIQMLARDFLDEYIFLAV 403
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,548,439
Number of Sequences: 37866
Number of extensions: 1320195
Number of successful extensions: 9202
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 497
Number of HSP's that attempted gapping in prelim test: 7837
Number of HSP's gapped (non-prelim): 1525
length of query: 585
length of database: 18,247,518
effective HSP length: 108
effective length of query: 477
effective length of database: 14,157,990
effective search space: 6753361230
effective search space used: 6753361230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.