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Search of human proteins with 113426225
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113426225 PREDICTED: FLJ44904 protein [Homo sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169209551 PREDICTED: FLJ44904 protein [Homo sapiens] 342 1e-94
gi|113426225 PREDICTED: FLJ44904 protein [Homo sapiens] 342 1e-94
gi|167857792 programmed cell death 1 precursor [Homo sapiens] 31 0.56
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 31 0.56
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 31 0.56
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 31 0.56
gi|186910302 Rac GTPase activating protein 1 [Homo sapiens] 28 2.8
gi|186910300 Rac GTPase activating protein 1 [Homo sapiens] 28 2.8
gi|21361397 Rac GTPase activating protein 1 [Homo sapiens] 28 2.8
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 28 3.6
gi|33457324 hypothetical protein LOC285555 [Homo sapiens] 28 3.6
gi|239754229 PREDICTED: hypothetical protein [Homo sapiens] 28 4.7
gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo ... 28 4.7
gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo ... 28 4.7
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 28 4.7
gi|46370086 transcription factor 12 isoform c [Homo sapiens] 27 6.1
gi|46370084 transcription factor 12 isoform b [Homo sapiens] 27 6.1
gi|4507391 transcription factor 12 isoform b [Homo sapiens] 27 6.1
gi|16751923 WAP, follistatin/kazal, immunoglobulin, kunitz and n... 27 6.1
gi|11036654 protocadherin beta 13 precursor [Homo sapiens] 27 6.1
gi|194018550 c-Maf-inducing protein isoform C-mip [Homo sapiens] 27 8.0
gi|29789255 c-Maf-inducing protein isoform Tc-mip [Homo sapiens] 27 8.0
gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens] 27 8.0
gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens] 27 8.0
gi|14149627 ubiquitin specific peptidase 15 [Homo sapiens] 27 8.0
gi|50301236 forkhead box J1 [Homo sapiens] 27 8.0
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 27 8.0
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 27 8.0
gi|197382758 heparan sulfate 2-O-sulfotransferase 1 isoform 2 [H... 27 8.0
>gi|169209551 PREDICTED: FLJ44904 protein [Homo sapiens]
Length = 166
Score = 342 bits (876), Expect = 1e-94
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MFPDGTFPCVHPLGCEPEGIAIVTIVNPDGPIASNPACRDSCPVPRLHAPGVRSSSSALG 60
MFPDGTFPCVHPLGCEPEGIAIVTIVNPDGPIASNPACRDSCPVPRLHAPGVRSSSSALG
Sbjct: 1 MFPDGTFPCVHPLGCEPEGIAIVTIVNPDGPIASNPACRDSCPVPRLHAPGVRSSSSALG 60
Query: 61 LRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPCLVKRDPDKINLLRQQPRPAASEAQSLF 120
LRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPCLVKRDPDKINLLRQQPRPAASEAQSLF
Sbjct: 61 LRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPCLVKRDPDKINLLRQQPRPAASEAQSLF 120
Query: 121 LASPGFRHKLERAAKTLDAAAALQGEDSAPSTFLCKKSGSSRRDQG 166
LASPGFRHKLERAAKTLDAAAALQGEDSAPSTFLCKKSGSSRRDQG
Sbjct: 121 LASPGFRHKLERAAKTLDAAAALQGEDSAPSTFLCKKSGSSRRDQG 166
>gi|113426225 PREDICTED: FLJ44904 protein [Homo sapiens]
Length = 166
Score = 342 bits (876), Expect = 1e-94
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MFPDGTFPCVHPLGCEPEGIAIVTIVNPDGPIASNPACRDSCPVPRLHAPGVRSSSSALG 60
MFPDGTFPCVHPLGCEPEGIAIVTIVNPDGPIASNPACRDSCPVPRLHAPGVRSSSSALG
Sbjct: 1 MFPDGTFPCVHPLGCEPEGIAIVTIVNPDGPIASNPACRDSCPVPRLHAPGVRSSSSALG 60
Query: 61 LRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPCLVKRDPDKINLLRQQPRPAASEAQSLF 120
LRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPCLVKRDPDKINLLRQQPRPAASEAQSLF
Sbjct: 61 LRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPCLVKRDPDKINLLRQQPRPAASEAQSLF 120
Query: 121 LASPGFRHKLERAAKTLDAAAALQGEDSAPSTFLCKKSGSSRRDQG 166
LASPGFRHKLERAAKTLDAAAALQGEDSAPSTFLCKKSGSSRRDQG
Sbjct: 121 LASPGFRHKLERAAKTLDAAAALQGEDSAPSTFLCKKSGSSRRDQG 166
>gi|167857792 programmed cell death 1 precursor [Homo sapiens]
Length = 288
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 12 PLGCEPEGIAIVTIVNPDGPIASNPACRDSCPVPRLHAP 50
P+ C PE TIV P G S+PA R S PR P
Sbjct: 238 PVPCVPEQTEYATIVFPSGMGTSSPARRGSADGPRSAQP 276
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 30.8 bits (68), Expect = 0.56
Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 39 RDSCPVPRLHAPGVRSSSSALGLRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPCLVKRD 98
R P PR AP R G L L GSG GS + S TH R
Sbjct: 290 RPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGS------GVTHSVGTHALATRRGSRA 343
Query: 99 PDKINLLRQQP--RPAASEAQSLFLASPGFR 127
P + +LR P RP +S A SP R
Sbjct: 344 PRPVGVLRGVPHFRPLSSPAPQSPPRSPSVR 374
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 30.8 bits (68), Expect = 0.56
Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 39 RDSCPVPRLHAPGVRSSSSALGLRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPCLVKRD 98
R P PR AP R G L L GSG GS + S TH R
Sbjct: 388 RPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGS------GVTHSVGTHALATRRGSRA 441
Query: 99 PDKINLLRQQP--RPAASEAQSLFLASPGFR 127
P + +LR P RP +S A SP R
Sbjct: 442 PRPVGVLRGVPHFRPLSSPAPQSPPRSPSVR 472
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 30.8 bits (68), Expect = 0.56
Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 39 RDSCPVPRLHAPGVRSSSSALGLRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPCLVKRD 98
R P PR AP R G L L GSG GS + S TH R
Sbjct: 388 RPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGS------GVTHSVGTHALATRRGSRA 441
Query: 99 PDKINLLRQQP--RPAASEAQSLFLASPGFR 127
P + +LR P RP +S A SP R
Sbjct: 442 PRPVGVLRGVPHFRPLSSPAPQSPPRSPSVR 472
>gi|186910302 Rac GTPase activating protein 1 [Homo sapiens]
Length = 632
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 10 VHPLGCEPEGIAI----VTIVNPDGPIASNPACRDSCPVP 45
+ P C P G I +++ D + S+P CRD CP+P
Sbjct: 295 IKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLP 334
>gi|186910300 Rac GTPase activating protein 1 [Homo sapiens]
Length = 632
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 10 VHPLGCEPEGIAI----VTIVNPDGPIASNPACRDSCPVP 45
+ P C P G I +++ D + S+P CRD CP+P
Sbjct: 295 IKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLP 334
>gi|21361397 Rac GTPase activating protein 1 [Homo sapiens]
Length = 632
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 10 VHPLGCEPEGIAI----VTIVNPDGPIASNPACRDSCPVP 45
+ P C P G I +++ D + S+P CRD CP+P
Sbjct: 295 IKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLP 334
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 28.1 bits (61), Expect = 3.6
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 109 PRPAASEAQSLFLASPGFRHKLERAAK 135
P P+ + ++SL L++PG RH E+A++
Sbjct: 150 PPPSRARSRSLRLSAPGSRHDAEKASE 176
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 28.1 bits (61), Expect = 3.6
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 109 PRPAASEAQSLFLASPGFRHKLERAAK 135
P P+ + ++SL L++PG RH E+A++
Sbjct: 150 PPPSRARSRSLRLSAPGSRHDAEKASE 176
>gi|33457324 hypothetical protein LOC285555 [Homo sapiens]
Length = 459
Score = 28.1 bits (61), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 25 IVNPDGPIASNPACRDSCPVP 45
+ + GP A NP R SCP+P
Sbjct: 397 VTDGPGPAAYNPVLRKSCPIP 417
>gi|239754229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 27.7 bits (60), Expect = 4.7
Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 24/131 (18%)
Query: 49 APGVRSSSSAL---GLRLCALAGSGLGSFKFQAVCIPFSPFTHLTL--PCLVK---RDPD 100
APG S++SA G C+ AG G S AV P SPF+ L PC + R P
Sbjct: 73 APGADSTTSAGVSGGFSSCSGAGWGPSS----AVLAP-SPFSSLGSWRPCAFRWRLRVPR 127
Query: 101 KINLLRQ-----------QPRPAASEAQSLFLASPGFRHKLERAAKTLDAAAALQGEDSA 149
+ L Q P AS + S L S K LDA+++
Sbjct: 128 NLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPV 187
Query: 150 PSTFLCKKSGS 160
S+ C SGS
Sbjct: 188 LSSVPCSSSGS 198
>gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo
sapiens]
Length = 513
Score = 27.7 bits (60), Expect = 4.7
Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 24/131 (18%)
Query: 49 APGVRSSSSAL---GLRLCALAGSGLGSFKFQAVCIPFSPFTHLTL--PCLVK---RDPD 100
APG S++SA G C+ AG G S AV P SPF+ L PC + R P
Sbjct: 73 APGADSTTSAGVSGGFSSCSGAGWGPSS----AVLAP-SPFSSLGSWRPCAFRWRLRVPR 127
Query: 101 KINLLRQ-----------QPRPAASEAQSLFLASPGFRHKLERAAKTLDAAAALQGEDSA 149
+ L Q P AS + S L S K LDA+++
Sbjct: 128 NLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPV 187
Query: 150 PSTFLCKKSGS 160
S+ C SGS
Sbjct: 188 LSSVPCSSSGS 198
>gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo
sapiens]
Length = 513
Score = 27.7 bits (60), Expect = 4.7
Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 24/131 (18%)
Query: 49 APGVRSSSSAL---GLRLCALAGSGLGSFKFQAVCIPFSPFTHLTL--PCLVK---RDPD 100
APG S++SA G C+ AG G S AV P SPF+ L PC + R P
Sbjct: 73 APGADSTTSAGVSGGFSSCSGAGWGPSS----AVLAP-SPFSSLGSWRPCAFRWRLRVPR 127
Query: 101 KINLLRQ-----------QPRPAASEAQSLFLASPGFRHKLERAAKTLDAAAALQGEDSA 149
+ L Q P AS + S L S K LDA+++
Sbjct: 128 NLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPV 187
Query: 150 PSTFLCKKSGS 160
S+ C SGS
Sbjct: 188 LSSVPCSSSGS 198
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 27.7 bits (60), Expect = 4.7
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 1 MFPDGTFPCVHPLGCEPEGIAIVTIVNPDGPIASNPACRDSCPVPRLHAPGVRSSSSALG 60
M P P + PL GI + PD P A+ P P P+ +P V S A
Sbjct: 795 MPPIPVVPPITPLA----GIDGLPPALPDLPTATVPPV----PPPQYFSPAVILPSLAAP 846
Query: 61 LRLCALAGSGLGSFKFQAVCIPFSPFTHLTLPC--LVKRDPDKINLLRQQPRPAAS 114
L + A QAV +P P L +PC +V P I LL P A+
Sbjct: 847 LPPASPA------LPLQAVKLPHPPGAPLAMPCRTIVPNAPATIPLLAVAPPGVAA 896
>gi|46370086 transcription factor 12 isoform c [Homo sapiens]
Length = 512
Score = 27.3 bits (59), Expect = 6.1
Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 17/119 (14%)
Query: 48 HAPGVRSSSSALGLRLCALAGSGLGSFKFQAVCIPFSP----FTHLTLPCLVKRDPDKIN 103
H P + S S LG R A S G +A+ +SP + + P P +
Sbjct: 142 HTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPDHTSSSFPSNPSTPVGSPSPLT 201
Query: 104 LLRQQPRPAASEAQSLFLASPGFRHKL--------ERAAKTLDAAAALQGEDSAPSTFL 154
Q PRP +SP + + L +R + DA L+ PST L
Sbjct: 202 GTSQWPRPGGQAP-----SSPSYENSLHSLQSRMEDRLDRLDDAIHVLRNHAVGPSTSL 255
>gi|46370084 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 27.3 bits (59), Expect = 6.1
Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 17/119 (14%)
Query: 48 HAPGVRSSSSALGLRLCALAGSGLGSFKFQAVCIPFSP----FTHLTLPCLVKRDPDKIN 103
H P + S S LG R A S G +A+ +SP + + P P +
Sbjct: 312 HTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPDHTSSSFPSNPSTPVGSPSPLT 371
Query: 104 LLRQQPRPAASEAQSLFLASPGFRHKL--------ERAAKTLDAAAALQGEDSAPSTFL 154
Q PRP +SP + + L +R + DA L+ PST L
Sbjct: 372 GTSQWPRPGGQAP-----SSPSYENSLHSLQSRMEDRLDRLDDAIHVLRNHAVGPSTSL 425
>gi|4507391 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 27.3 bits (59), Expect = 6.1
Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 17/119 (14%)
Query: 48 HAPGVRSSSSALGLRLCALAGSGLGSFKFQAVCIPFSP----FTHLTLPCLVKRDPDKIN 103
H P + S S LG R A S G +A+ +SP + + P P +
Sbjct: 312 HTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPDHTSSSFPSNPSTPVGSPSPLT 371
Query: 104 LLRQQPRPAASEAQSLFLASPGFRHKL--------ERAAKTLDAAAALQGEDSAPSTFL 154
Q PRP +SP + + L +R + DA L+ PST L
Sbjct: 372 GTSQWPRPGGQAP-----SSPSYENSLHSLQSRMEDRLDRLDDAIHVLRNHAVGPSTSL 425
>gi|16751923 WAP, follistatin/kazal, immunoglobulin, kunitz and
netrin domain containing 1 precursor [Homo sapiens]
Length = 548
Score = 27.3 bits (59), Expect = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 34 SNPACRDSCPVPRLHAPGVRSSSSALGLRLC 64
S +C D+CPVPR S L L LC
Sbjct: 401 SRESCEDACPVPRTPPCRACRLRSKLALSLC 431
>gi|11036654 protocadherin beta 13 precursor [Homo sapiens]
Length = 798
Score = 27.3 bits (59), Expect = 6.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 28 PDGPIASNPACRDSCPVPRLHAPGVRSSSSALGLRLCALAGSGLGSFKFQAVCIPFSP 85
P+GP+ P + G R+ S + +C GSG FKF IP P
Sbjct: 728 PEGPL----------PGHLVDMSGTRTLSQSYQYEVCLAGGSGTNEFKFLKPIIPNFP 775
>gi|194018550 c-Maf-inducing protein isoform C-mip [Homo sapiens]
Length = 773
Score = 26.9 bits (58), Expect = 8.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 90 TLPC-LVKRDPDKINLLRQQPRPAASEAQSLFLASPGFRHKLERAAKTLDAAAALQGEDS 148
TLP L+ PD L+ Q+ + + +S+ +AS ++ER + A A G DS
Sbjct: 368 TLPLRLLHPSPD---LVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDS 424
Query: 149 APSTFLC 155
P+ C
Sbjct: 425 EPNLIDC 431
>gi|29789255 c-Maf-inducing protein isoform Tc-mip [Homo sapiens]
Length = 679
Score = 26.9 bits (58), Expect = 8.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 90 TLPC-LVKRDPDKINLLRQQPRPAASEAQSLFLASPGFRHKLERAAKTLDAAAALQGEDS 148
TLP L+ PD L+ Q+ + + +S+ +AS ++ER + A A G DS
Sbjct: 274 TLPLRLLHPSPD---LVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDS 330
Query: 149 APSTFLC 155
P+ C
Sbjct: 331 EPNLIDC 337
>gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens]
Length = 963
Score = 26.9 bits (58), Expect = 8.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 72 GSFKFQAVC-------IPFSPFTHLTLPCLVKRD 98
G FK VC + F PF +LTLP +K+D
Sbjct: 453 GLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKD 486
>gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]
Length = 916
Score = 26.9 bits (58), Expect = 8.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 72 GSFKFQAVC-------IPFSPFTHLTLPCLVKRD 98
G FK VC + F PF +LTLP +K+D
Sbjct: 406 GLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKD 439
>gi|14149627 ubiquitin specific peptidase 15 [Homo sapiens]
Length = 952
Score = 26.9 bits (58), Expect = 8.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 72 GSFKFQAVC-------IPFSPFTHLTLPCLVKRDPD-KINLLRQQP 109
G FK VC + F PF +LTLP +K++ ++ L+R P
Sbjct: 411 GLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDP 456
>gi|50301236 forkhead box J1 [Homo sapiens]
Length = 421
Score = 26.9 bits (58), Expect = 8.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 8 PCVHPLGCEPEGIAIVT-IVNPDGPIASNPACRDSCPVPRLHAPGVRSSS 56
P + P G +P G V P P+A++PAC + + H PG +SS
Sbjct: 50 PALPPGGTDPHGYHQVPGSAAPGSPLAADPAC-----LGQPHTPGKPTSS 94
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 26.9 bits (58), Expect = 8.0
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 30 GPIASNPACRDSCPVPRLHAPGVRSSSSALGLRLCALAGSGLGSFKFQAVCIPFSPFTHL 89
G I N + ++SC L + + SS A+ ++ ++GS Q I P +
Sbjct: 1692 GSICGNGSSQNSCSYSNLTSSSLTQSSCAVTQQMSNISGS---CSMLQQTSISSPPTCSV 1748
Query: 90 TLP--CLVKRDPDKINLLRQ 107
P C+V+R P L Q
Sbjct: 1749 KSPQGCVVERPPSSSQQLAQ 1768
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 26.9 bits (58), Expect = 8.0
Identities = 34/105 (32%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 32 IASNPACR--DSCPVPRLH----APGVRSSSSALGLRLCA---LAGSGLGSFKFQAVC-- 80
+A PAC S PVP H APG + + C +GLG + +A+
Sbjct: 303 LAPAPACPLPTSPPVPAPHVTPHAPGPPDHPNQPPMMTCERLPCPTAGLGPLREEAMKPG 362
Query: 81 IPFSPFTHLTLPCLVKRDPDKINLLRQQPRPAASEAQSLFLASPG 125
SP + P L P K NL PR SE SL SPG
Sbjct: 363 AASSPLQQVPAPPL----PAKKNLPTAPPRRRVSERVSLEDQSPG 403
>gi|197382758 heparan sulfate 2-O-sulfotransferase 1 isoform 2 [Homo
sapiens]
Length = 229
Score = 26.9 bits (58), Expect = 8.0
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 95 VKRDPDKINLLRQQPRPAASEAQSLFLAS---PGFRHKLERAAKTLDAAAALQGEDSAP 150
VK+ P IN++R S L PG R + + KT D A G D AP
Sbjct: 153 VKKKPIYINVIRDPIERLVSYYYFLRFGDDYRPGLRRRKQGDKKTFDECVAEGGSDCAP 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,639,722
Number of Sequences: 37866
Number of extensions: 372044
Number of successful extensions: 954
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 32
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.