Guide to the Human Genome
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Name: LOC400553 Sequence: fasta or formatted (166aa) NCBI GI: 113426225
Description:

PREDICTED: FLJ44904 protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {166aa} PREDICTED: FLJ44904 protein
alt prot {196aa} PREDICTED: FLJ44904 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         19           4
 C cysteine            4.8          8           1
 D aspartate           4.8          8           1
 E glutamate           3.0          5           1
 F phenylalanine       5.4          9           1
 G glycine             7.8         13           1
 H histidine           2.4          4           1
 I isoleucine          3.6          6           1
 K lysine              4.2          7           2
 L leucine            10.8         18           2
 M methionine          0.6          1           1
 N asparagine          1.8          3           1
 P proline            10.8         18           1
 Q glutamine           3.6          6           2
 R arginine            6.6         11           2
 S serine             10.2         17           4
 T threonine           3.6          6           1
 V valine              4.2          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: FLJ44904 protein 
LOC400553             1.000   PREDICTED: FLJ44904 protein 
PDCD1                 0.019   programmed cell death 1 precursor 
FLJ31945              0.019   PREDICTED: hypothetical protein 
FLJ31945              0.019   PREDICTED: hypothetical protein 
FLJ31945              0.019   PREDICTED: hypothetical protein 
RACGAP1               0.009   Rac GTPase activating protein 1 
RACGAP1               0.009   Rac GTPase activating protein 1 
RACGAP1               0.009   Rac GTPase activating protein 1 
LOC100292845          0.009   PREDICTED: hypothetical protein 
LOC100289230          0.009   PREDICTED: hypothetical protein XP_002342600 
C4orf37               0.009   hypothetical protein LOC285555 
LOC100293256          0.009   PREDICTED: hypothetical protein 
LOC100290489          0.009   PREDICTED: hypothetical protein XP_002346789 
LOC100288758          0.009   PREDICTED: hypothetical protein XP_002342653 
WNK2                  0.009   WNK lysine deficient protein kinase 2 
TCF12                 0.006   transcription factor 12 isoform c 
TCF12                 0.006   transcription factor 12 isoform b 
TCF12                 0.006   transcription factor 12 isoform b 
WFIKKN1               0.006   WAP, follistatin/kazal, immunoglobulin, kunitz and n...
PCDHB13               0.006   protocadherin beta 13 precursor 
CMIP                  0.006   c-Maf-inducing protein isoform C-mip 
CMIP                  0.006   c-Maf-inducing protein isoform Tc-mip 
USP4                  0.006   ubiquitin specific protease 4 isoform a 
USP4                  0.006   ubiquitin specific protease 4 isoform b 
USP15                 0.006   ubiquitin specific peptidase 15 
FOXJ1                 0.006   forkhead box J1 
MYST4                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
RIN3                  0.006   Ras and Rab interactor 3 
HS2ST1                0.006   heparan sulfate 2-O-sulfotransferase 1 isoform 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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