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Search of human proteins with 20070280
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20070280 transcription associated factor 9B [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20070280 transcription associated factor 9B [Homo sapiens] 503 e-143
gi|62865614 TAF9 RNA polymerase II, TATA box binding protein-ass... 394 e-110
gi|4507351 TAF9 RNA polymerase II, TATA box binding protein-asso... 394 e-110
gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens] 35 0.062
gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens] 35 0.062
gi|91982772 mucin 17 [Homo sapiens] 34 0.11
gi|24797114 calcium-binding tyrosine phosphorylation-regulated p... 34 0.14
gi|24797108 calcium-binding tyrosine phosphorylation-regulated p... 34 0.14
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 33 0.18
gi|116284392 mucin 2 precursor [Homo sapiens] 33 0.18
gi|40806209 WW domain containing E3 ubiquitin protein ligase 2 i... 33 0.31
gi|40806207 WW domain containing E3 ubiquitin protein ligase 2 i... 33 0.31
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 33 0.31
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 33 0.31
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 32 0.40
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 32 0.40
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 32 0.40
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 32 0.40
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 32 0.40
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 32 0.40
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 32 0.40
gi|169217460 PREDICTED: similar to Mucin-6, partial [Homo sapiens] 32 0.52
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.52
gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo sap... 32 0.52
gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo sa... 32 0.52
gi|18379328 WW domain-containing adapter with a coiled-coil regi... 32 0.52
gi|18379332 WW domain-containing adapter with a coiled-coil regi... 32 0.52
gi|168693643 decay accelerating factor for complement isoform 2 ... 32 0.68
gi|10835143 decay accelerating factor for complement isoform 1 p... 32 0.68
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 32 0.68
>gi|20070280 transcription associated factor 9B [Homo sapiens]
Length = 251
Score = 503 bits (1295), Expect = e-143
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
Sbjct: 1 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
Query: 61 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY 120
AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
Sbjct: 61 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY 120
Query: 121 CLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTS 180
CLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTS
Sbjct: 121 CLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTS 180
Query: 181 QRFTVQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKR 240
QRFTVQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKR
Sbjct: 181 QRFTVQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKR 240
Query: 241 KHEDDDDNDIM 251
KHEDDDDNDIM
Sbjct: 241 KHEDDDDNDIM 251
>gi|62865614 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform a [Homo sapiens]
Length = 264
Score = 394 bits (1012), Expect = e-110
Identities = 206/255 (80%), Positives = 227/255 (89%), Gaps = 6/255 (2%)
Query: 1 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
MESGK A PK+ P+DA +MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
Sbjct: 1 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
Query: 61 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY 120
AKK VDADDVRLAIQCRADQSFTSPPPRDFLLDIARQ+NQTPLPLIKPY+GPRLPPDRY
Sbjct: 61 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY 120
Query: 121 CLTAPNYRLKSLIKK-GPNQGRL-VPRLSVGAVSSKPTTPTIA--TPQTVSVPNKVATPM 176
CLTAPNYRLKSL KK + GR+ VPRLSVG+V+S+P+TPT+ TPQT+SV KV TPM
Sbjct: 121 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM 180
Query: 177 SVTSQRFTVQIPPSQSTPVK-PVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANE- 234
S+T QRFTVQ+P SQS VK +PAT+AVQNVLINPS+IG KNILITTNM+SSQNTANE
Sbjct: 181 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES 240
Query: 235 ANPLKRKHEDDDDND 249
+N LKRK EDDDD+D
Sbjct: 241 SNALKRKREDDDDDD 255
>gi|4507351 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform a [Homo sapiens]
Length = 264
Score = 394 bits (1012), Expect = e-110
Identities = 206/255 (80%), Positives = 227/255 (89%), Gaps = 6/255 (2%)
Query: 1 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
MESGK A PK+ P+DA +MAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
Sbjct: 1 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH 60
Query: 61 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY 120
AKK VDADDVRLAIQCRADQSFTSPPPRDFLLDIARQ+NQTPLPLIKPY+GPRLPPDRY
Sbjct: 61 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY 120
Query: 121 CLTAPNYRLKSLIKK-GPNQGRL-VPRLSVGAVSSKPTTPTIA--TPQTVSVPNKVATPM 176
CLTAPNYRLKSL KK + GR+ VPRLSVG+V+S+P+TPT+ TPQT+SV KV TPM
Sbjct: 121 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM 180
Query: 177 SVTSQRFTVQIPPSQSTPVK-PVPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANE- 234
S+T QRFTVQ+P SQS VK +PAT+AVQNVLINPS+IG KNILITTNM+SSQNTANE
Sbjct: 181 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES 240
Query: 235 ANPLKRKHEDDDDND 249
+N LKRK EDDDD+D
Sbjct: 241 SNALKRKREDDDDDD 255
>gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens]
Length = 364
Score = 35.0 bits (79), Expect = 0.062
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 143 VPRLSVGAVSSKPTTPTIAT----------PQTVSVPNKVATPMSVTSQRFTVQIP---- 188
VP +V S PTT T+ T P T S+P + P++ T F +P
Sbjct: 161 VPTTTVPTTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQ 220
Query: 189 ---PSQSTPVKPVPATT 202
P ++P P PA T
Sbjct: 221 NHEPVATSPSSPQPAET 237
Score = 30.8 bits (68), Expect = 1.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 156 TTPTIATPQTVSVP--NKVATPMSVTSQRFTVQIPPSQSTP-VKPVPATTAV 204
T PT P T+S+P V T M+V++ T +P + S P VP TT V
Sbjct: 160 TVPTTTVPTTMSIPTTTTVLTTMTVST---TTSVPTTTSIPTTTSVPVTTTV 208
>gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens]
Length = 364
Score = 35.0 bits (79), Expect = 0.062
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 143 VPRLSVGAVSSKPTTPTIAT----------PQTVSVPNKVATPMSVTSQRFTVQIP---- 188
VP +V S PTT T+ T P T S+P + P++ T F +P
Sbjct: 161 VPTTTVPTTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQ 220
Query: 189 ---PSQSTPVKPVPATT 202
P ++P P PA T
Sbjct: 221 NHEPVATSPSSPQPAET 237
Score = 30.8 bits (68), Expect = 1.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 156 TTPTIATPQTVSVP--NKVATPMSVTSQRFTVQIPPSQSTP-VKPVPATTAV 204
T PT P T+S+P V T M+V++ T +P + S P VP TT V
Sbjct: 160 TVPTTTVPTTMSIPTTTTVLTTMTVST---TTSVPTTTSIPTTTSVPVTTTV 208
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 34.3 bits (77), Expect = 0.11
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 150 AVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLI 209
+ +S P T T T + V+ ++ + P ++TS PP+ S+ P TT+ + +
Sbjct: 4029 SATSTPHTSTSVTTRPVTPSSESSRPSTITSHTIPPTFPPAHSS----TPPTTSASSTTV 4084
Query: 210 NPSMI 214
NP +
Sbjct: 4085 NPEAV 4089
Score = 33.9 bits (76), Expect = 0.14
Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 28/185 (15%)
Query: 48 TTILDDAKIYSSHAKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKN-QTPLPL 106
T +L + SS A P+ + D + + T PP L ++ TPL +
Sbjct: 3580 TMLLSSTYVTSSEASTPSTPSVDRSTPVTTSTQSNSTPTPPEVITLPMSTPSEVSTPLTI 3639
Query: 107 IKPYAGPRLPPDRYCLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTV 166
+P +T S + + P ++ VSS P TP T +
Sbjct: 3640 --------MPVSTTSVTISEAGTASTLPVDTS----TPVITSTQVSSSPVTPE-GTTMPI 3686
Query: 167 SVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNILITTNMV 226
P++ +TP++ + PV T++ + L PS++ + +T +
Sbjct: 3687 WTPSEGSTPLT--------------TMPVSTTRVTSSEGSTLSTPSVVTSTPVTTSTEAI 3732
Query: 227 SSQNT 231
SS T
Sbjct: 3733 SSSAT 3737
Score = 28.9 bits (63), Expect = 4.4
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 152 SSKPTT-------PTI-----ATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVP 199
SS+P+T PT +TP T S + P +VT+ T + PS T P
Sbjct: 4051 SSRPSTITSHTIPPTFPPAHSSTPPTTSASSTTVNPEAVTT--MTTRTKPSTRTTSFPTV 4108
Query: 200 ATTAV-QNVLINPSMIGPKNILITTNMVSS--QNTAN 233
TTAV N I + + TT QNTA+
Sbjct: 4109 TTTAVPTNTTIKSNPTSTPTVPRTTTCFGDGCQNTAS 4145
>gi|24797114 calcium-binding tyrosine phosphorylation-regulated
protein isoform b [Homo sapiens]
Length = 475
Score = 33.9 bits (76), Expect = 0.14
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 30/121 (24%)
Query: 147 SVGAVSSKPTTPTIATPQTVSVP----------------------NKVATPMSVTSQRFT 184
+VG +SSKP TP TP + P KV++ S S
Sbjct: 118 AVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLGKVSSIHSDQSDVLM 177
Query: 185 VQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNIL--ITTNMVS------SQNTANEAN 236
V + S +K VP++ A ++V++ ++ +L N S SQ NEA
Sbjct: 178 VDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTSVHVDLGSQPKENEAE 237
Query: 237 P 237
P
Sbjct: 238 P 238
>gi|24797108 calcium-binding tyrosine phosphorylation-regulated
protein isoform a [Homo sapiens]
Length = 493
Score = 33.9 bits (76), Expect = 0.14
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 30/121 (24%)
Query: 147 SVGAVSSKPTTPTIATPQTVSVP----------------------NKVATPMSVTSQRFT 184
+VG +SSKP TP TP + P KV++ S S
Sbjct: 136 AVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLGKVSSIHSDQSDVLM 195
Query: 185 VQIPPSQSTPVKPVPATTAVQNVLINPSMIGPKNIL--ITTNMVS------SQNTANEAN 236
V + S +K VP++ A ++V++ ++ +L N S SQ NEA
Sbjct: 196 VDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTSVHVDLGSQPKENEAE 255
Query: 237 P 237
P
Sbjct: 256 P 256
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 33.5 bits (75), Expect = 0.18
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 10/148 (6%)
Query: 97 RQKNQTPLPLIK--PYAGPRLPPDRYCLTAPNYRLK------SLIKKGPNQGRLVPRLSV 148
R +TP P++ P P DR P R S +K P L +
Sbjct: 1275 RSSVKTPEPVVPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSVKTPETVVPTAPELQI 1334
Query: 149 GAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQST--PVKPVPATTAVQN 206
+ +P TP + T S N + ++ ++PPS ST PV P P + A +
Sbjct: 1335 STSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTEQPVTPEPTSRATRG 1394
Query: 207 VLINPSMIGPKNILITTNMVSSQNTANE 234
S P+ ++ T + + ++
Sbjct: 1395 RKNRSSGKTPETLVPTAPKLEPSTSTDQ 1422
Score = 29.6 bits (65), Expect = 2.6
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 144 PRLSVGAVSSKPTT--PTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPAT 201
P L A + +P T PT T + + V TP +V +Q S PV P P +
Sbjct: 1494 PELQASASTDQPVTSEPTSRTTRGRKNRSSVKTPETVVPAAPELQPSTSTDQPVTPEPTS 1553
Query: 202 TAVQNVLINPSMIGPKNIL 220
A + S+ P++I+
Sbjct: 1554 RATRGRTNRSSVKTPESIV 1572
Score = 29.3 bits (64), Expect = 3.4
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 144 PRLSVGAVSSKPTTPTIATPQTVSVPNK--VATPMSVTSQRFTVQIPPSQSTPVKPVPAT 201
P+L + +P TP + T N+ V TP +V +Q S PV P P +
Sbjct: 1412 PKLEPSTSTDQPVTPEPTSQATRGRTNRSSVKTPETVVPTAPELQPSTSTDQPVTPEPTS 1471
Query: 202 TAVQNVLINPSMIGPKNILIT 222
A + S+ P+ ++ T
Sbjct: 1472 QATRGRTDRSSVKTPETVVPT 1492
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 33.5 bits (75), Expect = 0.18
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 152 SSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPAT-TAVQNVLIN 210
S PTT T P T P TP + T PP +TP P+ T + +
Sbjct: 1642 SPPPTTTTTPPPTTTPSPPTTTTPSPPIT---TTTTPPPTTTPSSPITTTPSPPTTTMTT 1698
Query: 211 PSMIGPKNILITTNMVSSQNTANEANP 237
PS + ITT S T P
Sbjct: 1699 PSPTTTPSSPITTTTTPSSTTTPSPPP 1725
Score = 32.7 bits (73), Expect = 0.31
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 153 SKPTTPTIATPQTVSVPNKVATPM-----SVTSQRFTVQIPPSQSTPVKPVPATTAVQNV 207
S PTT I P + + TP + T T PP+ +TP P+ TT
Sbjct: 1619 SPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPT 1678
Query: 208 LINPSMIGPKNILITTNMVSSQNTANEANPL 238
S I TT M + T ++P+
Sbjct: 1679 TTPSSPITTTPSPPTTTMTTPSPTTTPSSPI 1709
Score = 32.0 bits (71), Expect = 0.52
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 152 SSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLINP 211
++ P++P TP + +P + S T PS +T P P T + P
Sbjct: 1678 TTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTP 1737
Query: 212 SMIGPKNILITTNMVSSQNTANEANPL 238
S P +TT ++ ++ PL
Sbjct: 1738 S---PPTTTMTTLPPTTTSSPLTTTPL 1761
Score = 30.8 bits (68), Expect = 1.2
Identities = 33/139 (23%), Positives = 42/139 (30%), Gaps = 13/139 (9%)
Query: 84 TSPPPRDF-----LLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSLIKKGPN 138
T+PPP I + T LP P P PP P P+
Sbjct: 1531 TTPPPTTTPSPPTTTPITPPTSTTTLP---PTTTPSPPPTTTTTPPPTTTPSPPTTTTPS 1587
Query: 139 QGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVAT-----PMSVTSQRFTVQIPPSQST 193
+ + P T T TP + P+ T P S T+ T P +T
Sbjct: 1588 PPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTT 1647
Query: 194 PVKPVPATTAVQNVLINPS 212
P P TT PS
Sbjct: 1648 TTTPPPTTTPSPPTTTTPS 1666
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 153 SKPTTPTIATPQTVSVPNKVATPM----SVTSQRFTVQIPPSQSTPVKPVPATTAVQNVL 208
S PTT T P T + TP+ S T+ T P +T P P TT
Sbjct: 1524 SPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTT 1583
Query: 209 INPSMIGPKNILITT 223
PS P I TT
Sbjct: 1584 TTPS---PPTITTTT 1595
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 153 SKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATT 202
S PTT T P T + TP +T T +PP+ +TP P TT
Sbjct: 1485 SPPTTTTTTPPPTTTPSPPTTTP--ITPPASTTTLPPT-TTPSPPTTTTT 1531
Score = 27.7 bits (60), Expect = 9.9
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 153 SKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATT 202
S PTT P + + TP T+ T PP +TP P+ TT
Sbjct: 1400 SPPTTTPSPPPTSTTTLPPTTTPSPPTT---TTTTPPPTTTPSPPITTTT 1446
>gi|40806209 WW domain containing E3 ubiquitin protein ligase 2
isoform 3 [Homo sapiens]
Length = 335
Score = 32.7 bits (73), Expect = 0.31
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 146 LSVGAVSSKPTTPTIAT-PQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAV 204
L+ G V+ +PTT T P V V + A P+SVT T +P + P+T+
Sbjct: 230 LANGTVNDEPTTATDPEEPSVVGVTSPPAAPLSVTPNPNTTSLPAPATPAEGEEPSTSGT 289
Query: 205 QNV 207
Q +
Sbjct: 290 QQL 292
>gi|40806207 WW domain containing E3 ubiquitin protein ligase 2
isoform 1 [Homo sapiens]
Length = 870
Score = 32.7 bits (73), Expect = 0.31
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 146 LSVGAVSSKPTTPTIAT-PQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAV 204
L+ G V+ +PTT T P V V + A P+SVT T +P + P+T+
Sbjct: 230 LANGTVNDEPTTATDPEEPSVVGVTSPPAAPLSVTPNPNTTSLPAPATPAEGEEPSTSGT 289
Query: 205 QNV 207
Q +
Sbjct: 290 QQL 292
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 32.7 bits (73), Expect = 0.31
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 109 PYAGPRLPPDRYCLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTT------PTIAT 162
P + PR+PP R L+ R S + P L PRLS + PTT P AT
Sbjct: 772 PASPPRVPP-REPLSPQGSRTPSPLVP-PGSSPLPPRLSSSPGKTMPTTQSFASDPKYAT 829
Query: 163 PQTVSVPNKVATP 175
PQ + P A P
Sbjct: 830 PQVIQAPGPRAGP 842
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
sapiens]
Length = 1086
Score = 32.7 bits (73), Expect = 0.31
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 109 PYAGPRLPPDRYCLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTT------PTIAT 162
P + PR+PP R L+ R S + P L PRLS + PTT P AT
Sbjct: 850 PASPPRVPP-REPLSPQGSRTPSPLVP-PGSSPLPPRLSSSPGKTMPTTQSFASDPKYAT 907
Query: 163 PQTVSVPNKVATP 175
PQ + P A P
Sbjct: 908 PQVIQAPGPRAGP 920
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 32.3 bits (72), Expect = 0.40
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 110 YAGPRLPPDRYCLTAPNYRLKSLIKKGP---NQGRLVPRLSVGAVSSKPTTPTIATPQ-- 164
+ GP PP C AP+ + S K P +Q + +P +V A S KP P +A PQ
Sbjct: 391 HQGPGPPP---CQKAPSGLVTSC--KAPFLVDQSQKLP--AVPASSWKPP-PGLAPPQKA 442
Query: 165 -TVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATTA 203
S P + A + SQ+ PSQ P P P+ A
Sbjct: 443 PAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKA 482
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 32.3 bits (72), Expect = 0.40
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 153 SKPTTPTIATPQTVSVPN----KVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVL 208
S PTTP +P T P K P + T P+ +TP +P P TT
Sbjct: 410 SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTK----- 464
Query: 209 INPSMIGPKNILITTNMVSSQNTANEANP 237
P+ PK TT ++ T + P
Sbjct: 465 -KPAPTTPKEPAPTTPKETAPTTPKKLTP 492
Score = 31.6 bits (70), Expect = 0.68
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 151 VSSKPTTPTIATPQTV-SVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATT------- 202
+ S PTTP P T S P P T++ P+ +TP +P P TT
Sbjct: 237 IKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKE------PAPTTPKEPAPTTTKEPAPTT 290
Query: 203 --AVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
+ P+ PK TT + T E P K
Sbjct: 291 TKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPK 331
Score = 31.6 bits (70), Expect = 0.68
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 155 PTTPTIATPQTVSVP---NKVATPMSVTSQRFTVQIPPSQSTPVKPVPAT--TAVQNVLI 209
PTTP TP T P K P + T P+ +TP +P P T
Sbjct: 319 PTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTK 378
Query: 210 NPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
PS PK TT S+ T E P K
Sbjct: 379 EPSPTTPKEPAPTTTK-SAPTTTKEPAPTTTK 409
Score = 31.2 bits (69), Expect = 0.89
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 19/106 (17%)
Query: 155 PTTPTIATPQTVSVPN----KVATPMSVTSQRFTVQIPPSQSTPVKPVPA---------- 200
PTTP TP T P K A P + T P+ +TP +P P
Sbjct: 516 PTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTP 575
Query: 201 -----TTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
TT + P PK + TT + T ++ P K
Sbjct: 576 KGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTTPK 621
Score = 30.8 bits (68), Expect = 1.2
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 153 SKPTTPTIATPQTV-SVPNKVATPMSVTSQRFTVQIP--PSQSTPVKPVPATTAVQNVLI 209
S PTT P T S P P T++ P P+ +TP KP P T
Sbjct: 395 SAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPK------ 448
Query: 210 NPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
P+ PK TT + T E P K
Sbjct: 449 EPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPK 480
Score = 29.3 bits (64), Expect = 3.4
Identities = 26/90 (28%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 155 PTTPTIATPQTVSVPNKVA--TPMSVTSQRF-TVQIPPSQSTPVKPVPATTAVQNVLINP 211
PTTP P T P P T + T P+ + P KP P T P
Sbjct: 311 PTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPK------EP 364
Query: 212 SMIGPKNILITTNMVSSQNTANEANPLKRK 241
+ PK TT S T E P K
Sbjct: 365 APTTPKEPAPTTTKEPSPTTPKEPAPTTTK 394
Score = 29.3 bits (64), Expect = 3.4
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 155 PTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIP----------PSQSTPVKPVPATTAV 204
PTTP P+ ++ P P S TS + P P+ +TP KP P T
Sbjct: 657 PTTPKKPAPKELA-PTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTT--- 712
Query: 205 QNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRKHED 244
P+ TT+ VS+ T E + + ++
Sbjct: 713 -----------PETPPPTTSEVSTPTTTKEPTTIHKSPDE 741
Score = 29.3 bits (64), Expect = 3.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 155 PTTPTIATPQTVSVP----NKVATPMSVTSQRFTVQIPPSQSTP-VKPVPATTAVQN 206
PTTP P T P ++V+TP + T + T+ P +STP + P A++N
Sbjct: 702 PTTPKKPAPTTPETPPPTTSEVSTP-TTTKEPTTIHKSPDESTPELSAEPTPKALEN 757
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 32.3 bits (72), Expect = 0.40
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 153 SKPTTPTIATPQTVSVPN----KVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVL 208
S PTTP +P T P K P + T P+ +TP +P P TT
Sbjct: 451 SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTK----- 505
Query: 209 INPSMIGPKNILITTNMVSSQNTANEANP 237
P+ PK TT ++ T + P
Sbjct: 506 -KPAPTTPKEPAPTTPKETAPTTPKKLTP 533
Score = 31.6 bits (70), Expect = 0.68
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 151 VSSKPTTPTIATPQTV-SVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATT------- 202
+ S PTTP P T S P P T++ P+ +TP +P P TT
Sbjct: 278 IKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKE------PAPTTPKEPAPTTTKEPAPTT 331
Query: 203 --AVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
+ P+ PK TT + T E P K
Sbjct: 332 TKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPK 372
Score = 31.6 bits (70), Expect = 0.68
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 155 PTTPTIATPQTVSVP---NKVATPMSVTSQRFTVQIPPSQSTPVKPVPAT--TAVQNVLI 209
PTTP TP T P K P + T P+ +TP +P P T
Sbjct: 360 PTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTK 419
Query: 210 NPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
PS PK TT S+ T E P K
Sbjct: 420 EPSPTTPKEPAPTTTK-SAPTTTKEPAPTTTK 450
Score = 31.2 bits (69), Expect = 0.89
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 19/106 (17%)
Query: 155 PTTPTIATPQTVSVPN----KVATPMSVTSQRFTVQIPPSQSTPVKPVPA---------- 200
PTTP TP T P K A P + T P+ +TP +P P
Sbjct: 557 PTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTP 616
Query: 201 -----TTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
TT + P PK + TT + T ++ P K
Sbjct: 617 KGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTTPK 662
Score = 30.8 bits (68), Expect = 1.2
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 153 SKPTTPTIATPQTV-SVPNKVATPMSVTSQRFTVQIP--PSQSTPVKPVPATTAVQNVLI 209
S PTT P T S P P T++ P P+ +TP KP P T
Sbjct: 436 SAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPK------ 489
Query: 210 NPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
P+ PK TT + T E P K
Sbjct: 490 EPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPK 521
Score = 29.3 bits (64), Expect = 3.4
Identities = 26/90 (28%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 155 PTTPTIATPQTVSVPNKVA--TPMSVTSQRF-TVQIPPSQSTPVKPVPATTAVQNVLINP 211
PTTP P T P P T + T P+ + P KP P T P
Sbjct: 352 PTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPK------EP 405
Query: 212 SMIGPKNILITTNMVSSQNTANEANPLKRK 241
+ PK TT S T E P K
Sbjct: 406 APTTPKEPAPTTTKEPSPTTPKEPAPTTTK 435
Score = 29.3 bits (64), Expect = 3.4
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 155 PTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIP----------PSQSTPVKPVPATTAV 204
PTTP P+ ++ P P S TS + P P+ +TP KP P T
Sbjct: 698 PTTPKKPAPKELA-PTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTT--- 753
Query: 205 QNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRKHED 244
P+ TT+ VS+ T E + + ++
Sbjct: 754 -----------PETPPPTTSEVSTPTTTKEPTTIHKSPDE 782
Score = 29.3 bits (64), Expect = 3.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 155 PTTPTIATPQTVSVP----NKVATPMSVTSQRFTVQIPPSQSTP-VKPVPATTAVQN 206
PTTP P T P ++V+TP + T + T+ P +STP + P A++N
Sbjct: 743 PTTPKKPAPTTPETPPPTTSEVSTP-TTTKEPTTIHKSPDESTPELSAEPTPKALEN 798
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 32.3 bits (72), Expect = 0.40
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 153 SKPTTPTIATPQTVSVPN----KVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVL 208
S PTTP +P T P K P + T P+ +TP +P P TT
Sbjct: 503 SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTK----- 557
Query: 209 INPSMIGPKNILITTNMVSSQNTANEANP 237
P+ PK TT ++ T + P
Sbjct: 558 -KPAPTTPKEPAPTTPKETAPTTPKKLTP 585
Score = 31.6 bits (70), Expect = 0.68
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 151 VSSKPTTPTIATPQTV-SVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATT------- 202
+ S PTTP P T S P P T++ P+ +TP +P P TT
Sbjct: 330 IKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKE------PAPTTPKEPAPTTTKEPAPTT 383
Query: 203 --AVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
+ P+ PK TT + T E P K
Sbjct: 384 TKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPK 424
Score = 31.6 bits (70), Expect = 0.68
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 155 PTTPTIATPQTVSVP---NKVATPMSVTSQRFTVQIPPSQSTPVKPVPAT--TAVQNVLI 209
PTTP TP T P K P + T P+ +TP +P P T
Sbjct: 412 PTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTK 471
Query: 210 NPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
PS PK TT S+ T E P K
Sbjct: 472 EPSPTTPKEPAPTTTK-SAPTTTKEPAPTTTK 502
Score = 31.2 bits (69), Expect = 0.89
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 19/106 (17%)
Query: 155 PTTPTIATPQTVSVPN----KVATPMSVTSQRFTVQIPPSQSTPVKPVPA---------- 200
PTTP TP T P K A P + T P+ +TP +P P
Sbjct: 609 PTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTP 668
Query: 201 -----TTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
TT + P PK + TT + T ++ P K
Sbjct: 669 KGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTTPK 714
Score = 30.8 bits (68), Expect = 1.2
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 153 SKPTTPTIATPQTV-SVPNKVATPMSVTSQRFTVQIP--PSQSTPVKPVPATTAVQNVLI 209
S PTT P T S P P T++ P P+ +TP KP P T
Sbjct: 488 SAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPK------ 541
Query: 210 NPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
P+ PK TT + T E P K
Sbjct: 542 EPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPK 573
Score = 29.3 bits (64), Expect = 3.4
Identities = 26/90 (28%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 155 PTTPTIATPQTVSVPNKVA--TPMSVTSQRF-TVQIPPSQSTPVKPVPATTAVQNVLINP 211
PTTP P T P P T + T P+ + P KP P T P
Sbjct: 404 PTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPK------EP 457
Query: 212 SMIGPKNILITTNMVSSQNTANEANPLKRK 241
+ PK TT S T E P K
Sbjct: 458 APTTPKEPAPTTTKEPSPTTPKEPAPTTTK 487
Score = 29.3 bits (64), Expect = 3.4
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 155 PTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIP----------PSQSTPVKPVPATTAV 204
PTTP P+ ++ P P S TS + P P+ +TP KP P T
Sbjct: 750 PTTPKKPAPKELA-PTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTT--- 805
Query: 205 QNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRKHED 244
P+ TT+ VS+ T E + + ++
Sbjct: 806 -----------PETPPPTTSEVSTPTTTKEPTTIHKSPDE 834
Score = 29.3 bits (64), Expect = 3.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 155 PTTPTIATPQTVSVP----NKVATPMSVTSQRFTVQIPPSQSTP-VKPVPATTAVQN 206
PTTP P T P ++V+TP + T + T+ P +STP + P A++N
Sbjct: 795 PTTPKKPAPTTPETPPPTTSEVSTP-TTTKEPTTIHKSPDESTPELSAEPTPKALEN 850
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 32.3 bits (72), Expect = 0.40
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 153 SKPTTPTIATPQTVSVPN----KVATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVL 208
S PTTP +P T P K P + T P+ +TP +P P TT
Sbjct: 544 SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTK----- 598
Query: 209 INPSMIGPKNILITTNMVSSQNTANEANP 237
P+ PK TT ++ T + P
Sbjct: 599 -KPAPTTPKEPAPTTPKETAPTTPKKLTP 626
Score = 31.6 bits (70), Expect = 0.68
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 151 VSSKPTTPTIATPQTV-SVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPATT------- 202
+ S PTTP P T S P P T++ P+ +TP +P P TT
Sbjct: 371 IKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKE------PAPTTPKEPAPTTTKEPAPTT 424
Query: 203 --AVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
+ P+ PK TT + T E P K
Sbjct: 425 TKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPK 465
Score = 31.6 bits (70), Expect = 0.68
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 155 PTTPTIATPQTVSVP---NKVATPMSVTSQRFTVQIPPSQSTPVKPVPAT--TAVQNVLI 209
PTTP TP T P K P + T P+ +TP +P P T
Sbjct: 453 PTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTK 512
Query: 210 NPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
PS PK TT S+ T E P K
Sbjct: 513 EPSPTTPKEPAPTTTK-SAPTTTKEPAPTTTK 543
Score = 31.2 bits (69), Expect = 0.89
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 19/106 (17%)
Query: 155 PTTPTIATPQTVSVPN----KVATPMSVTSQRFTVQIPPSQSTPVKPVPA---------- 200
PTTP TP T P K A P + T P+ +TP +P P
Sbjct: 650 PTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTP 709
Query: 201 -----TTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
TT + P PK + TT + T ++ P K
Sbjct: 710 KGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTTPK 755
Score = 30.8 bits (68), Expect = 1.2
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 153 SKPTTPTIATPQTV-SVPNKVATPMSVTSQRFTVQIP--PSQSTPVKPVPATTAVQNVLI 209
S PTT P T S P P T++ P P+ +TP KP P T
Sbjct: 529 SAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPK------ 582
Query: 210 NPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
P+ PK TT + T E P K
Sbjct: 583 EPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPK 614
Score = 29.3 bits (64), Expect = 3.4
Identities = 26/90 (28%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 155 PTTPTIATPQTVSVPNKVA--TPMSVTSQRF-TVQIPPSQSTPVKPVPATTAVQNVLINP 211
PTTP P T P P T + T P+ + P KP P T P
Sbjct: 445 PTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPK------EP 498
Query: 212 SMIGPKNILITTNMVSSQNTANEANPLKRK 241
+ PK TT S T E P K
Sbjct: 499 APTTPKEPAPTTTKEPSPTTPKEPAPTTTK 528
Score = 29.3 bits (64), Expect = 3.4
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 155 PTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIP----------PSQSTPVKPVPATTAV 204
PTTP P+ ++ P P S TS + P P+ +TP KP P T
Sbjct: 791 PTTPKKPAPKELA-PTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTT--- 846
Query: 205 QNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRKHED 244
P+ TT+ VS+ T E + + ++
Sbjct: 847 -----------PETPPPTTSEVSTPTTTKEPTTIHKSPDE 875
Score = 29.3 bits (64), Expect = 3.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 155 PTTPTIATPQTVSVP----NKVATPMSVTSQRFTVQIPPSQSTP-VKPVPATTAVQN 206
PTTP P T P ++V+TP + T + T+ P +STP + P A++N
Sbjct: 836 PTTPKKPAPTTPETPPPTTSEVSTP-TTTKEPTTIHKSPDESTPELSAEPTPKALEN 891
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 32.3 bits (72), Expect = 0.40
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 114 RLPPDRYCLTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVA 173
+LPP L PN L S+ G V + G S T A P+ + P A
Sbjct: 1299 KLPPSNSAL--PNQALGSIAGLGMQNLNSVRQN--GNPSMFGVGNTAAQPRGMQQPP--A 1352
Query: 174 TPMSVTSQRFTVQIPPSQSTPVKPVPATT-AVQNVLINPSMIGPKNILITTNMVSSQNTA 232
P+S + Q+PP +P PV A N +NP + GP+ + + N +S N
Sbjct: 1353 QPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAPNNGGLNP-LFGPQQVAM-LNQLSQLNQL 1410
Query: 233 NEANPLKR 240
++ + L+R
Sbjct: 1411 SQISQLQR 1418
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 32.3 bits (72), Expect = 0.40
Identities = 41/164 (25%), Positives = 58/164 (35%), Gaps = 8/164 (4%)
Query: 73 LAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL-KS 131
+A + Q+ +PP T P P P P T P K+
Sbjct: 4667 MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGTTPITPVLTSTATTPAATSSKA 4726
Query: 132 LIKKGPNQGRLVPRLSVGAVSSKPTT----PTIATPQTVSVPNKVATPMSVTSQRFTVQI 187
P +P L+ A S T+ P+ T +VP + TPMS S T
Sbjct: 4727 TSSSSPRTATTLPVLTSTATKSTATSFTPIPSSTLWTTWTVPAQTTTPMSTMSTIHTSST 4786
Query: 188 PPSQSTPVKPVPATTAVQNVLINPSMIGPKNILITTNMVSSQNT 231
P ++T V TTA N S P + L TT +++ T
Sbjct: 4787 P--ETTHTSTVLTTTATMTRATN-STATPSSTLGTTRILTELTT 4827
Score = 29.6 bits (65), Expect = 2.6
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 157 TPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQ---STPVKPVPATTAVQNVLINPSM 213
TP+ +T + + P+ + T ++T+ T PS +TP+ PV TTA + S
Sbjct: 3936 TPSSSTQTSGTPPSLITTATTITATGSTTN--PSSTPGTTPIPPVLTTTATTPAATS-ST 3992
Query: 214 IGPKNILITTNMVSSQNT 231
+ P + L TT+ NT
Sbjct: 3993 VTPSSALGTTHTPPVPNT 4010
Score = 29.6 bits (65), Expect = 2.6
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 146 LSVGAVSSKP-----TTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPA 200
+S SS P +T AT T VATP S T ++P + +T P+
Sbjct: 4550 MSTATPSSTPETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPS 4609
Query: 201 TTAVQNVLINPSMIGPKNILITTNMVSSQNTANEAN 236
++ L P I TT +S +T ++
Sbjct: 4610 SSP-GTALTPPVWISTTTTPTTTTPTTSGSTVTPSS 4644
Score = 28.5 bits (62), Expect = 5.8
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 157 TPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQS---TPVKPVPATTAVQNVLINPSM 213
TP+ +T + + P+ T ++T+ T PS + TP+ PV TTA + S
Sbjct: 2679 TPSSSTQTSGTPPSLTTTATTITATGSTTN--PSSTPGTTPIPPVLTTTATTPAATS-ST 2735
Query: 214 IGPKNILITTNMVSSQNT 231
+ P + L TT+ NT
Sbjct: 2736 VTPSSALGTTHTPPVPNT 2753
Score = 28.5 bits (62), Expect = 5.8
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 157 TPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQS---TPVKPVPATTAVQNVLINPSM 213
TP+ +T + + P+ T ++T+ T PS + TP+ PV TTA + S
Sbjct: 3379 TPSSSTQTSGTPPSLTTTATTITATGSTTN--PSSTPGTTPIPPVLTTTATTPAATS-ST 3435
Query: 214 IGPKNILITTNMVSSQNT 231
+ P + L TT+ NT
Sbjct: 3436 VTPSSALGTTHTPPVPNT 3453
Score = 28.1 bits (61), Expect = 7.6
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 143 VPRLSVGAVSSKP--TTPTIATPQTV---SVPNKVATPMSVTSQRFTVQIPPSQSTPVKP 197
+P ++G + P TT +AT T+ S P T +T++ T + S STP
Sbjct: 3072 IPSFTLGTTGTLPEQTTTPMATMSTIHPSSTPETTHTSTVLTTKATTTRATSSMSTP-SS 3130
Query: 198 VPATT 202
P TT
Sbjct: 3131 TPGTT 3135
Score = 28.1 bits (61), Expect = 7.6
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 143 VPRLSVGAVSSKP--TTPTIATPQTV---SVPNKVATPMSVTSQRFTVQIPPSQSTP--- 194
+P ++G + P TT +AT T+ S P T +T++ T + S STP
Sbjct: 4329 IPSSTLGTTGTLPEQTTTPVATMSTIHPSSTPETTHTSTVLTTKATTTRATSSTSTPSST 4388
Query: 195 ---------VKPVPATTAVQNVLINPSMI-GPKNIL--ITTNMVSSQNTANEANP 237
+ TTA PS G IL +TT ++ +T + A P
Sbjct: 4389 PGTTWILTELTTAATTTAATGPTATPSSTPGTTWILTELTTTATTTASTGSTATP 4443
Score = 27.7 bits (60), Expect = 9.9
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 146 LSVGAVSSKP-----TTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPA 200
+S SS P +T AT T VATP S T ++P + +T P+
Sbjct: 2008 MSTATPSSTPETAHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPS 2067
Query: 201 TT 202
++
Sbjct: 2068 SS 2069
>gi|169217460 PREDICTED: similar to Mucin-6, partial [Homo sapiens]
Length = 350
Score = 32.0 bits (71), Expect = 0.52
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 147 SVGAVSSKPTTP-TIATPQTVSVPNKVATPMSVTSQRFTVQIP-PSQSTPVKPV---PAT 201
+ A SS+ TTP T +P T S P PM+ TS + T P PS S P P +
Sbjct: 137 TTSATSSRLTTPFTTHSPSTGSSPVSSTGPMTATSFQTTTTYPTPSLSQTTLPTYVPPFS 196
Query: 202 TAVQNVLINPSMIGPKNILITTNMVSSQNTANEANPLKRK 241
T++ + + P+ + T+ + S T P K
Sbjct: 197 TSLVTPSTHTVITPPRTQMATSASIHSTPTGTIPPPTTLK 236
Score = 30.0 bits (66), Expect = 2.0
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 152 SSKPTTPTIATPQTVSVPNKVATPMSVTSQR----FTVQIPPSQSTPVK---PVPATT 202
+S TT P + VA S TS R FT PP+ STP+ PV AT+
Sbjct: 283 TSTSTTNITPNPTSTGTGTPVAHTTSATSSRLTTPFTTHSPPTGSTPISSTGPVTATS 340
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 32.0 bits (71), Expect = 0.52
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 6/118 (5%)
Query: 105 PLIKPYAGPRLPPDRYCLTAPNYRLKSLIK---KGPNQGRLVPRLSVGAVSSKPTTPTIA 161
P+ P++ P PP T P+ SL + P P +S A P +A
Sbjct: 672 PVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLA 731
Query: 162 TPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTP---VKPVPATTAVQNVLINPSMIGP 216
P P+ A+P S ++PP + P V P P + + L P P
Sbjct: 732 APPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAP 789
Score = 30.4 bits (67), Expect = 1.5
Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 17/138 (12%)
Query: 63 KPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLP-PDRYC 121
+P + R ++ ++ S T P P AR++ P AG L P
Sbjct: 197 RPRPPTEGPRKSVSSASEHSTTEPSPA------ARRR---------PSAGGGLQRPASRS 241
Query: 122 LTAPNYRLKSLIKKGPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQ 181
L++ L S + GP+ R PR KP P V+ P K A P
Sbjct: 242 LSSSATPLSSPARSGPS-ARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLS 300
Query: 182 RFTVQIPPSQSTPVKPVP 199
+ P T +PVP
Sbjct: 301 SSPLATPSPSGTKARPVP 318
Score = 28.5 bits (62), Expect = 5.8
Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 22/144 (15%)
Query: 81 QSFTSPPPRDFLLDIARQKNQTPLPLI-----KPYAGPRLPPDRYCLTAPNYRLKSLIKK 135
Q+ SPP L +A Q P L P++ P PP + + P
Sbjct: 631 QAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPP---------- 680
Query: 136 GPNQGRLVPRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPV 195
P +S A P++A P P+ A+P S Q PP + P
Sbjct: 681 ------ASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPP 734
Query: 196 KPVPATTAVQNVLINPSMIGPKNI 219
VP + + +PS P +
Sbjct: 735 LQVPPSPPASPPM-SPSATPPPRV 757
>gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo
sapiens]
Length = 1048
Score = 32.0 bits (71), Expect = 0.52
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 27/141 (19%)
Query: 96 ARQKNQTPLPLIKPYAGPRLPPDRYCL--------TAPNYRLKSLIKKGPNQGRLVPRLS 147
+R++ Q P+ +++PY ++ + + TAP L + ++G + P
Sbjct: 88 SREEKQEPV-VVRPYPQVQMLSTHHAVASATPVAVTAPPAHLTPAVPLSFSEGLMKPPPK 146
Query: 148 VGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPA------- 200
+ S+P P A P T+S+P KV ++VT + IP + + PV +
Sbjct: 147 P-TMPSRPIAP--APPSTLSLPPKVPGQVTVTMES---SIPQASAIPVATISGQQGHPSN 200
Query: 201 -----TTAVQNVLINPSMIGP 216
TT VQ +I + GP
Sbjct: 201 LHHIMTTNVQMSIIRSNAPGP 221
>gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo
sapiens]
Length = 1083
Score = 32.0 bits (71), Expect = 0.52
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 27/141 (19%)
Query: 96 ARQKNQTPLPLIKPYAGPRLPPDRYCL--------TAPNYRLKSLIKKGPNQGRLVPRLS 147
+R++ Q P+ +++PY ++ + + TAP L + ++G + P
Sbjct: 88 SREEKQEPV-VVRPYPQVQMLSTHHAVASATPVAVTAPPAHLTPAVPLSFSEGLMKPPPK 146
Query: 148 VGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPA------- 200
+ S+P P A P T+S+P KV ++VT + IP + + PV +
Sbjct: 147 P-TMPSRPIAP--APPSTLSLPPKVPGQVTVTMES---SIPQASAIPVATISGQQGHPSN 200
Query: 201 -----TTAVQNVLINPSMIGP 216
TT VQ +I + GP
Sbjct: 201 LHHIMTTNVQMSIIRSNAPGP 221
>gi|18379328 WW domain-containing adapter with a coiled-coil region
isoform 1 [Homo sapiens]
Length = 647
Score = 32.0 bits (71), Expect = 0.52
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 144 PRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPA 200
PR+S ++ P P I+TP S P KV+TP+ Q P SQS +PV A
Sbjct: 453 PRISTPQTNTVPIKPLISTPPVSSQP-KVSTPV-------VKQGPVSQSATQQPVTA 501
>gi|18379332 WW domain-containing adapter with a coiled-coil region
isoform 3 [Homo sapiens]
Length = 544
Score = 32.0 bits (71), Expect = 0.52
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 144 PRLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTSQRFTVQIPPSQSTPVKPVPA 200
PR+S ++ P P I+TP S P KV+TP+ Q P SQS +PV A
Sbjct: 350 PRISTPQTNTVPIKPLISTPPVSSQP-KVSTPV-------VKQGPVSQSATQQPVTA 398
>gi|168693643 decay accelerating factor for complement isoform 2
precursor [Homo sapiens]
Length = 440
Score = 31.6 bits (70), Expect = 0.68
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 158 PTIATPQTVSVPNKVATPMSVTSQRFTVQ--IPPSQSTPVKPVPATT 202
PT+ P TV+VP T +S TSQ+ T + P +Q+T PV TT
Sbjct: 294 PTVQKPTTVNVP---TTEVSPTSQKTTTKTTTPNAQATRSTPVSRTT 337
>gi|10835143 decay accelerating factor for complement isoform 1
preproprotein [Homo sapiens]
Length = 381
Score = 31.6 bits (70), Expect = 0.68
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 158 PTIATPQTVSVPNKVATPMSVTSQRFTVQ--IPPSQSTPVKPVPATT 202
PT+ P TV+VP T +S TSQ+ T + P +Q+T PV TT
Sbjct: 294 PTVQKPTTVNVP---TTEVSPTSQKTTTKTTTPNAQATRSTPVSRTT 337
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 31.6 bits (70), Expect = 0.68
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 16/122 (13%)
Query: 122 LTAPNYRLKSLIKKGPNQGRLVP-RLSVGAVSSKPTTPTIATPQTVSVPNKVATPMSVTS 180
LT RL SLI + ++ + + G+ +S TT T T T T+
Sbjct: 3449 LTEKLLRLLSLISIALPENKVSEAQANSGSGASSTTTATSTTSTTT------------TT 3496
Query: 181 QRFTVQIPPSQSTPVKPVPA---TTAVQNVLINPSMIGPKNILITTNMVSSQNTANEANP 237
T PP+ TPV PA TA+ +++ S TT + S T +P
Sbjct: 3497 AASTTPTPPTAPTPVTSAPALVAATAISTIVVAASTTVTTPTTATTTVSISPTTKGSKSP 3556
Query: 238 LK 239
K
Sbjct: 3557 AK 3558
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,614,700
Number of Sequences: 37866
Number of extensions: 510602
Number of successful extensions: 2055
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 1587
Number of HSP's gapped (non-prelim): 531
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.