Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RFXANK Sequence: fasta or formatted (237aa) NCBI GI: 19924156
Description:

regulatory factor X-associated ankyrin-containing protein isoform b

Referenced in:

Ankyrin Family
HLA and Related Proteins

Other entries for this name:
alt prot [260aa] regulatory factor X-associated ankyrin-containing protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         21           2
 C cysteine            1.3          3           1
 D aspartate           7.6         18           1
 E glutamate           8.4         20           2
 F phenylalanine       2.1          5           1
 G glycine             7.2         17           2
 H histidine           1.7          4           1
 I isoleucine          3.8          9           1
 K lysine              2.5          6           1
 L leucine            12.2         29           3
 M methionine          0.8          2           1
 N asparagine          4.2         10           1
 P proline             7.6         18           1
 Q glutamine           3.8          9           2
 R arginine            3.8          9           1
 S serine              6.8         16           2
 T threonine           7.2         17           2
 V valine              6.8         16           2
 W tryptophan          1.3          3           1
 Y tyrosine            2.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   regulatory factor X-associated ankyrin-containing pr... 
RFXANK                0.952   regulatory factor X-associated ankyrin-containing pro...
ANKRA2                0.412   ankyrin repeat, family A (RFXANK-like), 2 
KIDINS220             0.130   kinase D-interacting substrate of 220 kDa 
ANKRD17               0.115   ankyrin repeat domain protein 17 isoform a 
ANKHD1                0.112   ankyrin repeat and KH domain containing 1 isoform 3 ...
ANKHD1                0.112   ankyrin repeat and KH domain containing 1 isoform 2 ...
ANKHD1                0.112   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.112   ANKHD1-EIF4EBP3 protein 
ANKRD17               0.112   ankyrin repeat domain protein 17 isoform b 
EHMT1                 0.110   euchromatic histone-lysine N-methyltransferase 1 is...
ANK3                  0.110   ankyrin 3 isoform 1 
ANKRD50               0.106   ankyrin repeat domain 50 
ANK2                  0.106   ankyrin 2 isoform 3 
ANK2                  0.106   ankyrin 2 isoform 2 
ANK2                  0.106   ankyrin 2 isoform 1 
EHMT2                 0.104   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.104   euchromatic histone-lysine N-methyltransferase 2 is...
ANKK1                 0.101   ankyrin repeat and kinase domain containing 1 
ASZ1                  0.101   ankyrin repeat, SAM and basic leucine zipper domain ...
INVS                  0.099   inversin isoform a 
INVS                  0.099   inversin isoform b 
ANK1                  0.097   ankyrin 1 isoform 9 
ANK1                  0.097   ankyrin 1 isoform 1 
ANK1                  0.097   ankyrin 1 isoform 3 
ANK1                  0.097   ankyrin 1 isoform 2 
ANK1                  0.097   ankyrin 1 isoform 4 
ILK                   0.097   integrin-linked kinase 
ILK                   0.097   integrin-linked kinase 
ILK                   0.097   integrin-linked kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press