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Search of human proteins with 19923272
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923272 xenotropic and polytropic retrovirus receptor
isoform 1 [Homo sapiens]
(696 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923272 xenotropic and polytropic retrovirus receptor isofor... 1419 0.0
gi|208609982 xenotropic and polytropic retrovirus receptor isofo... 885 0.0
gi|110825982 hect domain and RLD 5 [Homo sapiens] 38 0.028
gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens] 37 0.047
gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens] 37 0.047
gi|70166580 GRINL1A upstream protein isoform 7 [Homo sapiens] 37 0.047
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 37 0.081
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 37 0.081
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 36 0.14
gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens] 35 0.18
gi|61563742 hect domain and RLD 6 [Homo sapiens] 35 0.18
gi|5174457 kinetochore associated 2 [Homo sapiens] 32 1.5
gi|27436948 lamin A/C isoform 3 [Homo sapiens] 32 2.0
gi|5031875 lamin A/C isoform 2 [Homo sapiens] 32 2.0
gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens] 32 2.0
gi|148271104 patched domain containing 1 [Homo sapiens] 32 2.6
gi|14150134 coiled-coil-helix-coiled-coil-helix domain containin... 31 4.4
gi|75677351 suppressor of defective silencing 3 [Homo sapiens] 31 4.4
gi|14249254 EF-hand calcium binding domain 4B isoform c [Homo sa... 31 4.4
gi|222418793 EF-hand calcium binding domain 4B isoform b [Homo s... 31 4.4
gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo s... 31 4.4
gi|50083279 centrosome protein 4 [Homo sapiens] 30 5.8
gi|66773038 cell division cycle 37 homolog (S. cerevisiae)-like ... 30 5.8
gi|4507011 glucose transporter 4 [Homo sapiens] 30 7.6
gi|122937514 unc-13 homolog C [Homo sapiens] 30 7.6
gi|210147514 ring finger protein 187 [Homo sapiens] 30 7.6
gi|166795299 solute carrier family 2 (facilitated glucose transp... 30 9.9
gi|25121987 non-SMC condensin I complex, subunit H [Homo sapiens] 30 9.9
>gi|19923272 xenotropic and polytropic retrovirus receptor isoform 1
[Homo sapiens]
Length = 696
Score = 1419 bits (3672), Expect = 0.0
Identities = 696/696 (100%), Positives = 696/696 (100%)
Query: 1 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ 60
MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
Sbjct: 1 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ 60
Query: 61 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE 120
TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
Sbjct: 61 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE 120
Query: 121 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 180
ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
Sbjct: 121 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 180
Query: 181 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF 240
EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
Sbjct: 181 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF 240
Query: 241 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV 300
CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
Sbjct: 241 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV 300
Query: 301 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI 360
LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
Sbjct: 301 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI 360
Query: 361 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE 420
NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
Sbjct: 361 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE 420
Query: 421 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA 480
LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA
Sbjct: 421 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA 480
Query: 481 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN 540
GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
Sbjct: 481 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN 540
Query: 541 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE 600
AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE
Sbjct: 541 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE 600
Query: 601 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS 660
VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS
Sbjct: 601 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS 660
Query: 661 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT 696
WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT
Sbjct: 661 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT 696
>gi|208609982 xenotropic and polytropic retrovirus receptor isoform
2 [Homo sapiens]
Length = 631
Score = 885 bits (2287), Expect = 0.0
Identities = 437/438 (99%), Positives = 437/438 (99%)
Query: 1 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ 60
MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
Sbjct: 1 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ 60
Query: 61 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE 120
TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
Sbjct: 61 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE 120
Query: 121 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 180
ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
Sbjct: 121 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 180
Query: 181 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF 240
EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
Sbjct: 181 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF 240
Query: 241 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV 300
CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
Sbjct: 241 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV 300
Query: 301 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI 360
LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
Sbjct: 301 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI 360
Query: 361 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE 420
NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
Sbjct: 361 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE 420
Query: 421 LKWDESKGLLPNNSEESG 438
LKWDESKGLLPNNSEE G
Sbjct: 421 LKWDESKGLLPNNSEERG 438
Score = 405 bits (1042), Expect = e-113
Identities = 197/202 (97%), Positives = 199/202 (98%)
Query: 495 LYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKNAGENTFLREEIVYP 554
L + +ERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKNAGENTFLREEIVYP
Sbjct: 430 LPNNSEERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKNAGENTFLREEIVYP 489
Query: 555 QKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLEVFRRFVWNFFRLEN 614
QKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLEVFRRFVWNFFRLEN
Sbjct: 490 QKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLEVFRRFVWNFFRLEN 549
Query: 615 EHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRSWKYNQSISLRRPRL 674
EHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRSWKYNQSISLRRPRL
Sbjct: 550 EHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRSWKYNQSISLRRPRL 609
Query: 675 ASQSKARDTKVLIEDTDDEANT 696
ASQSKARDTKVLIEDTDDEANT
Sbjct: 610 ASQSKARDTKVLIEDTDDEANT 631
>gi|110825982 hect domain and RLD 5 [Homo sapiens]
Length = 1024
Score = 38.1 bits (87), Expect = 0.028
Identities = 22/103 (21%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 45 DTVKRYFAKFEEKFFQTCEKELAKI------------NTFYSEKLAEAQRRFATLQNELQ 92
D+VK + +F F++ C++++ K+ NT Y K E R+ N
Sbjct: 875 DSVKAVYEEFRRGFYKMCDEDIIKLFHPEELKDVIVGNTDYDWKTFEKNARYEPGYNSSH 934
Query: 93 SSLDAQKESTGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAF 135
++ ++ TL +++K + L+ +R+Q +++ ++K+ F
Sbjct: 935 PTIVMFWKAFHKLTLEEKKKFLVFLTGTDRLQMKDLNNMKITF 977
>gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens]
Length = 445
Score = 37.4 bits (85), Expect = 0.047
Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 15/201 (7%)
Query: 8 SAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELA 67
+++I + R YEA D L Q Q +V ++ +K +E + +
Sbjct: 185 NSNIKDQIRNLQQTYEASMDKLREKQRQLEVAQVENQ-LLKMKVESSQEANAEVMREMTK 243
Query: 68 KINTFYSEKLAEAQRRFAT----LQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERV 123
K+ + Y EKL E QR+ + L E S L A +E+ ++ +S EE+
Sbjct: 244 KLYSQYEEKLQEEQRKHSAEKEALLEETNSFLKAIEEAN-------KKMQAAEISLEEKD 296
Query: 124 QHRNIKDLKLAFSE---FYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 180
Q D + E L L LL++ ++ +++ ++ E S R+ H+
Sbjct: 297 QRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDSDKERYQQLEEASASLRERIRHL 356
Query: 181 EVAPFYTCKKINQLISETEAV 201
+ KK+ Q++ E E++
Sbjct: 357 DDMVHCQQKKVKQMVEEIESL 377
>gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens]
Length = 550
Score = 37.4 bits (85), Expect = 0.047
Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 15/201 (7%)
Query: 8 SAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELA 67
+++I + R YEA D L Q Q +V ++ +K +E + +
Sbjct: 185 NSNIKDQIRNLQQTYEASMDKLREKQRQLEVAQVENQ-LLKMKVESSQEANAEVMREMTK 243
Query: 68 KINTFYSEKLAEAQRRFAT----LQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERV 123
K+ + Y EKL E QR+ + L E S L A +E+ ++ +S EE+
Sbjct: 244 KLYSQYEEKLQEEQRKHSAEKEALLEETNSFLKAIEEAN-------KKMQAAEISLEEKD 296
Query: 124 QHRNIKDLKLAFSE---FYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 180
Q D + E L L LL++ ++ +++ ++ E S R+ H+
Sbjct: 297 QRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDSDKERYQQLEEASASLRERIRHL 356
Query: 181 EVAPFYTCKKINQLISETEAV 201
+ KK+ Q++ E E++
Sbjct: 357 DDMVHCQQKKVKQMVEEIESL 377
>gi|70166580 GRINL1A upstream protein isoform 7 [Homo sapiens]
Length = 466
Score = 37.4 bits (85), Expect = 0.047
Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 15/201 (7%)
Query: 8 SAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELA 67
+++I + R YEA D L Q Q +V ++ +K +E + +
Sbjct: 185 NSNIKDQIRNLQQTYEASMDKLREKQRQLEVAQVENQ-LLKMKVESSQEANAEVMREMTK 243
Query: 68 KINTFYSEKLAEAQRRFAT----LQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERV 123
K+ + Y EKL E QR+ + L E S L A +E+ ++ +S EE+
Sbjct: 244 KLYSQYEEKLQEEQRKHSAEKEALLEETNSFLKAIEEAN-------KKMQAAEISLEEKD 296
Query: 124 QHRNIKDLKLAFSE---FYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 180
Q D + E L L LL++ ++ +++ ++ E S R+ H+
Sbjct: 297 QRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDSDKERYQQLEEASASLRERIRHL 356
Query: 181 EVAPFYTCKKINQLISETEAV 201
+ KK+ Q++ E E++
Sbjct: 357 DDMVHCQQKKVKQMVEEIESL 377
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 36.6 bits (83), Expect = 0.081
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 71 TFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERVQHR-NIK 129
T Y KL ++ + + + S +A+ E L + + L + ++HR NI+
Sbjct: 594 TNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIE 653
Query: 130 DLKLAFSEFYLSLI------LLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVEVA 183
LK Y I + Q + + F I K++ ILE S+ D + + V
Sbjct: 654 KLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSK 713
Query: 184 PFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRV 220
+IN+L E E + E E G ++ ++ L++
Sbjct: 714 SEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQL 750
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 36.6 bits (83), Expect = 0.081
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 71 TFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERVQHR-NIK 129
T Y KL ++ + + + S +A+ E L + + L + ++HR NI+
Sbjct: 594 TNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIE 653
Query: 130 DLKLAFSEFYLSLI------LLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVEVA 183
LK Y I + Q + + F I K++ ILE S+ D + + V
Sbjct: 654 KLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSK 713
Query: 184 PFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRV 220
+IN+L E E + E E G ++ ++ L++
Sbjct: 714 SEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQL 750
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 35.8 bits (81), Expect = 0.14
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 154 TGFRKILKKHDKILETSRGADWRVAHVEVAPFYTC---KKINQLISETEAVVTNELEDGD 210
+ F+ LKK LE + A W + + PF T K I +LI+E +A VT E+EDG
Sbjct: 263 SNFKDFLKK---CLEKNVDARWTTSQLLQHPFVTVDSNKPIRELIAEAKAEVTEEVEDGK 319
Query: 211 RQ 212
+
Sbjct: 320 EE 321
>gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens]
Length = 438
Score = 35.4 bits (80), Expect = 0.18
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 20/207 (9%)
Query: 8 SAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELA 67
+++I + R YEA D L Q Q +V ++ +K +E + +
Sbjct: 185 NSNIKDQIRNLQQTYEASMDKLREKQRQLEVAQVENQ-LLKMKVESSQEANAEVMREMTK 243
Query: 68 KINTFYSEKLAEAQRRFA----TLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERV 123
K+ + Y EKL E QR+ + L E S L A +E+ ++ +S EE+
Sbjct: 244 KLYSQYEEKLQEEQRKHSAEKEALLEETNSFLKAIEEA-------NKKMQAAEISLEEKD 296
Query: 124 QHRNIKDL---KLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV 180
Q D ++ L L LL++ ++ +++ ++ E S R+ H+
Sbjct: 297 QRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDSDKERYQQLEEASASLRERIRHL 356
Query: 181 EVAPFYTCKKINQLISETEAVVTNELE 207
+ KK+ Q++ E NEL+
Sbjct: 357 DDMVHCQQKKVKQMVEE-----NNELQ 378
>gi|61563742 hect domain and RLD 6 [Homo sapiens]
Length = 1022
Score = 35.4 bits (80), Expect = 0.18
Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 46 TVKRYFAKFEEKFFQTCEKELAKI------------NTFYSEKLAEAQRRFATLQNELQS 93
+VK + +F+ F++ CEKE+ + NT Y K E ++ +
Sbjct: 867 SVKAVYEEFQRGFYRVCEKEILRHFYPEELMTAIIGNTDYDWKQFEQNSKYEQGYQKSHP 926
Query: 94 SLDAQKESTGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAF 135
++ ++ TL +++K +F L+ +R+ R I+ +++ F
Sbjct: 927 TIQLFWKAFHKLTLDEKKKFLFFLTGRDRLHARGIQKMEIVF 968
>gi|5174457 kinetochore associated 2 [Homo sapiens]
Length = 642
Score = 32.3 bits (72), Expect = 1.5
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 1 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQ---APSVEVTDEDTVKRYFAKFEE- 56
+KF A+ ++R Q Y K++L +++ A + ++ EDT+++ A E
Sbjct: 439 IKFNPEAGANCLVKYRAQV--YVPLKELLNETEEEINKALNKKMGLEDTLEQLNAMITES 496
Query: 57 -KFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQS 93
+ +T ++E+ K++ Y +K+ EA+ +EL+S
Sbjct: 497 KRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELES 534
>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
Length = 634
Score = 32.0 bits (71), Expect = 2.0
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 56 EKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVF 115
E QT ++EL YSE+L E +RR T E+ + + ES L++ R
Sbjct: 194 ENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELR---- 249
Query: 116 HLSHEERVQHRNIKDLKLAFS 136
HE++V+ K+L+ +S
Sbjct: 250 -AQHEDQVEQYK-KELEKTYS 268
>gi|5031875 lamin A/C isoform 2 [Homo sapiens]
Length = 572
Score = 32.0 bits (71), Expect = 2.0
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 56 EKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVF 115
E QT ++EL YSE+L E +RR T E+ + + ES L++ R
Sbjct: 194 ENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELR---- 249
Query: 116 HLSHEERVQHRNIKDLKLAFS 136
HE++V+ K+L+ +S
Sbjct: 250 -AQHEDQVEQYK-KELEKTYS 268
>gi|27436946 lamin A/C isoform 1 precursor [Homo sapiens]
Length = 664
Score = 32.0 bits (71), Expect = 2.0
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 56 EKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVF 115
E QT ++EL YSE+L E +RR T E+ + + ES L++ R
Sbjct: 194 ENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQELR---- 249
Query: 116 HLSHEERVQHRNIKDLKLAFS 136
HE++V+ K+L+ +S
Sbjct: 250 -AQHEDQVEQYK-KELEKTYS 268
>gi|148271104 patched domain containing 1 [Homo sapiens]
Length = 888
Score = 31.6 bits (70), Expect = 2.6
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 379 FRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLELKWDESKGLLPNNSEESG 438
F + +PF + A + NS I + Y++ FY L + G + NN + S
Sbjct: 386 FGIGASPFTNIEAARIFCC---NSCIAIFFNYLYVLSFYGSSLVFT---GYIENNYQHSI 439
Query: 439 ICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDT 470
C K +Q PAW RF+ R DT
Sbjct: 440 FCRKVPKP--EALQEKPAWYRFLLTARFSEDT 469
>gi|14150134 coiled-coil-helix-coiled-coil-helix domain containing 6
[Homo sapiens]
Length = 235
Score = 30.8 bits (68), Expect = 4.4
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 44 EDTVKRY---FAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKE 100
++ VKRY A ++K FQ ++E L + ++ +E Q S+ +E
Sbjct: 84 KEGVKRYEQEHAAIQDKLFQVAKREREAATKHSKASLPTGE---GSISHEEQKSVRLARE 140
Query: 101 STGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFY 139
RR+ F+ ER++ +N + KL+ +F+
Sbjct: 141 LES-REAELRRRDTFYKEQLERIERKNAEMYKLSSEQFH 178
>gi|75677351 suppressor of defective silencing 3 [Homo sapiens]
Length = 328
Score = 30.8 bits (68), Expect = 4.4
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 22 YEAFKDMLYSAQDQAPSVE--VTDEDTV---KRYFAKFEEKFFQTCEKELAKINTFYSEK 76
Y + L SA+D S +DEDT + AK +E+ + ++++ Y +K
Sbjct: 23 YPEEDEELESAEDDERSCRGRESDEDTEDASETDLAKHDEEDYVEMKEQM------YQDK 76
Query: 77 LAEAQRRFATLQN-ELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAF 135
LA +R+ LQ LQ K+ R R +F E+V+ IK+ K A
Sbjct: 77 LASLKRQLQQLQEGTLQEYQKRMKKLDQQYKERIRNAELFLQLETEQVERNYIKEKKAAV 136
Query: 136 SEF 138
EF
Sbjct: 137 KEF 139
>gi|14249254 EF-hand calcium binding domain 4B isoform c [Homo
sapiens]
Length = 395
Score = 30.8 bits (68), Expect = 4.4
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 22 YEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQ 81
+E F + S +A + E +KR A ++E+ E+ +I + + L +
Sbjct: 197 FEDFLTRIISQLQEAHEEKNELECALKRKIAAYDEEIQHLYEEMEQQIKSEKEQFLLKDT 256
Query: 82 RRFATLQNELQSSLDAQKESTGVTTLRQRR-----KPVFHLSHEERVQHRNIK 129
RF EL+ L +++ T +Q+R + H HE + ++ +K
Sbjct: 257 ERFQARSQELEQKLLCKEQELEQLTQKQKRLEGQCTALHHDKHETKAENTKLK 309
>gi|222418793 EF-hand calcium binding domain 4B isoform b [Homo
sapiens]
Length = 462
Score = 30.8 bits (68), Expect = 4.4
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 22 YEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQ 81
+E F + S +A + E +KR A ++E+ E+ +I + + L +
Sbjct: 197 FEDFLTRIISQLQEAHEEKNELECALKRKIAAYDEEIQHLYEEMEQQIKSEKEQFLLKDT 256
Query: 82 RRFATLQNELQSSLDAQKESTGVTTLRQRR-----KPVFHLSHEERVQHRNIK 129
RF EL+ L +++ T +Q+R + H HE + ++ +K
Sbjct: 257 ERFQARSQELEQKLLCKEQELEQLTQKQKRLEGQCTALHHDKHETKAENTKLK 309
>gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo
sapiens]
Length = 731
Score = 30.8 bits (68), Expect = 4.4
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 22 YEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQ 81
+E F + S +A + E +KR A ++E+ E+ +I + + L +
Sbjct: 197 FEDFLTRIISQLQEAHEEKNELECALKRKIAAYDEEIQHLYEEMEQQIKSEKEQFLLKDT 256
Query: 82 RRFATLQNELQSSLDAQKESTGVTTLRQRR-----KPVFHLSHEERVQHRNIK 129
RF EL+ L +++ T +Q+R + H HE + ++ +K
Sbjct: 257 ERFQARSQELEQKLLCKEQELEQLTQKQKRLEGQCTALHHDKHETKAENTKLK 309
>gi|50083279 centrosome protein 4 [Homo sapiens]
Length = 1140
Score = 30.4 bits (67), Expect = 5.8
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 40 EVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQ---RRFATLQNELQSSLD 96
E+T+ D + + + +E+ +T +KEL + KL+E Q A LQ EL
Sbjct: 318 ELTEIDQLAQQLERHKEEVLETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQK 377
Query: 97 AQKESTGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSL 142
++ + ++ + V H +E+ Q + K A +E L+L
Sbjct: 378 EKERLSDELLVKSDLETVVHQLEQEK-QRLSKKVESFAVTERQLTL 422
>gi|66773038 cell division cycle 37 homolog (S. cerevisiae)-like 1
[Homo sapiens]
Length = 337
Score = 30.4 bits (67), Expect = 5.8
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 63 EKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQ--KESTGVTTLRQRRK 112
+KE K + LAEAQ++ +L SLD + K T V+ LRQR +
Sbjct: 57 QKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREE 108
>gi|4507011 glucose transporter 4 [Homo sapiens]
Length = 509
Score = 30.0 bits (66), Expect = 7.6
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 300 VLIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIP--TYVYPLALYGFMVF 357
VL+ E R L HL +AG G C L+ + +P +YV +A++GF+ F
Sbjct: 341 VLLVERAGRRTL---HLLGLAGMCG---CAILMTVALLLLERVPAMSYVSIVAIFGFVAF 394
Query: 358 FLINP 362
F I P
Sbjct: 395 FEIGP 399
>gi|122937514 unc-13 homolog C [Homo sapiens]
Length = 2214
Score = 30.0 bits (66), Expect = 7.6
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 64 KELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERV 123
+EL+ I + YSE L NEL+SS + Q +ST +R+ RK L+ E
Sbjct: 118 QELSSIESSYSESL-----------NELRSSTENQAQSTHTMPVRRNRKSSSSLAPSEGS 166
Query: 124 Q--HRNIKDLKL 133
R + LKL
Sbjct: 167 SDGERTLHGLKL 178
>gi|210147514 ring finger protein 187 [Homo sapiens]
Length = 126
Score = 30.0 bits (66), Expect = 7.6
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 41 VTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKE 100
+TD ++ +F + EE F Q EKE ++LA+ RF +L + S L+ +
Sbjct: 63 LTDYKKLRAFFVEEEEHFLQEAEKE----EGLPEDELADPTERFRSLLQAV-SELEKKHR 117
Query: 101 STGVTTLRQ 109
+ G++ L Q
Sbjct: 118 NLGLSMLLQ 126
>gi|166795299 solute carrier family 2 (facilitated glucose
transporter), member 1 [Homo sapiens]
Length = 492
Score = 29.6 bits (65), Expect = 9.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 315 HLFEIAGFLGILWCLSLLACFFAPISVIP--TYVYPLALYGFMVFFLINP 362
HL +AG G C L+ A + +P +Y+ +A++GF+ FF + P
Sbjct: 337 HLIGLAGMAG---CAILMTIALALLEQLPWMSYLSIVAIFGFVAFFEVGP 383
>gi|25121987 non-SMC condensin I complex, subunit H [Homo sapiens]
Length = 741
Score = 29.6 bits (65), Expect = 9.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 632 APLNADDQTLLEQMMDQDDGVRNRQKNRSWKYNQSISLRRPRLASQSKARDTKV 685
APLN +LE DD Q+ RS ++ S PRL + +R +
Sbjct: 42 APLNIPGTPVLEDFPQNDDEKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDI 95
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,513,457
Number of Sequences: 37866
Number of extensions: 1029667
Number of successful extensions: 3483
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3460
Number of HSP's gapped (non-prelim): 45
length of query: 696
length of database: 18,247,518
effective HSP length: 109
effective length of query: 587
effective length of database: 14,120,124
effective search space: 8288512788
effective search space used: 8288512788
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.