Guide to the Human Genome
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Search of human proteins with 19923198

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|19923198 runt-related transcription factor 1 isoform AML1c
[Homo sapiens]
         (480 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19923198 runt-related transcription factor 1 isoform AML1c [H...   979   0.0  
gi|49574546 runt-related transcription factor 1 isoform AML1b [H...   911   0.0  
gi|226442791 runt-related transcription factor 2 isoform b [Homo...   578   e-165
gi|226442783 runt-related transcription factor 2 isoform a [Homo...   566   e-161
gi|66934969 runt-related transcription factor 2 isoform c [Homo ...   565   e-161
gi|72534652 runt-related transcription factor 3 isoform 1 [Homo ...   492   e-139
gi|169790837 runt-related transcription factor 1 isoform AML1a [...   479   e-135
gi|4757918 runt-related transcription factor 3 isoform 2 [Homo s...   476   e-134
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     50   3e-06
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     50   3e-06
gi|28558973 mediator complex subunit 14 [Homo sapiens]                 46   7e-05
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]       42   0.002
gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]        42   0.002
gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]       42   0.002
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap...    41   0.003
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap...    41   0.003
gi|55750053 atrophin-1 [Homo sapiens]                                  41   0.003
gi|55750041 atrophin-1 [Homo sapiens]                                  41   0.003
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]             40   0.004
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ...    39   0.010
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]               39   0.014
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    39   0.014
gi|116284392 mucin 2 precursor [Homo sapiens]                          38   0.018
gi|5454064 RNA binding motif protein 14 [Homo sapiens]                 38   0.018
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]       37   0.030
gi|32171215 CREB regulated transcription coactivator 2 [Homo sap...    37   0.030
gi|45827755 transforming, acidic coiled-coil containing protein ...    37   0.030
gi|13376611 zinc finger protein 703 [Homo sapiens]                     37   0.040
gi|193083129 MAP/microtubule affinity-regulating kinase 3 isofor...    37   0.040
gi|46852166 MAP/microtubule affinity-regulating kinase 3 isoform...    37   0.040

>gi|19923198 runt-related transcription factor 1 isoform AML1c [Homo
           sapiens]
          Length = 480

 Score =  979 bits (2530), Expect = 0.0
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPLGA 60
           MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPLGA
Sbjct: 1   MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPLGA 60

Query: 61  PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA 120
           PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA
Sbjct: 61  PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA 120

Query: 121 LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF 180
           LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF
Sbjct: 121 LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF 180

Query: 181 TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP 240
           TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP
Sbjct: 181 TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP 240

Query: 241 HHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPAT 300
           HHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPAT
Sbjct: 241 HHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPAT 300

Query: 301 PISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV 360
           PISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV
Sbjct: 301 PISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV 360

Query: 361 TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVG 420
           TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVG
Sbjct: 361 TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVG 420

Query: 421 GERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480
           GERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY
Sbjct: 421 GERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480


>gi|49574546 runt-related transcription factor 1 isoform AML1b [Homo
           sapiens]
          Length = 453

 Score =  911 bits (2354), Expect = 0.0
 Identities = 448/448 (100%), Positives = 448/448 (100%)

Query: 33  DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 92
           DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT
Sbjct: 6   DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 65

Query: 93  DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 152
           DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK
Sbjct: 66  DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 125

Query: 153 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 212
           NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD
Sbjct: 126 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 185

Query: 213 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ 272
           QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ
Sbjct: 186 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ 245

Query: 273 IQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSD 332
           IQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSD
Sbjct: 246 IQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSD 305

Query: 333 PRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQ 392
           PRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQ
Sbjct: 306 PRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQ 365

Query: 393 GGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDV 452
           GGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDV
Sbjct: 366 GGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDV 425

Query: 453 VEAEGSHSNSPTNMAPSARLEEAVWRPY 480
           VEAEGSHSNSPTNMAPSARLEEAVWRPY
Sbjct: 426 VEAEGSHSNSPTNMAPSARLEEAVWRPY 453


>gi|226442791 runt-related transcription factor 2 isoform b [Homo
           sapiens]
          Length = 499

 Score =  578 bits (1491), Expect = e-165
 Identities = 314/525 (59%), Positives = 373/525 (71%), Gaps = 71/525 (13%)

Query: 1   MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPL-- 58
           MAS+S+F +     Q F               D STSRRF+PPS++L PGKMS+  P+  
Sbjct: 1   MASNSLFSTVTPCQQNFF-------------WDPSTSRRFSPPSSSLQPGKMSDVSPVVA 47

Query: 59  ---------------------------------GAPDAGAALAGKLRS--GDRSMVEVLA 83
                                             A  A AA   +LR    +R+MVE++A
Sbjct: 48  AQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIA 107

Query: 84  DHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAE 143
           DHP ELVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALG+VPDGT+VTVMAGNDENYSAE
Sbjct: 108 DHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAE 167

Query: 144 LRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREP 203
           LRNA+A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK+TVDGPREP
Sbjct: 168 LRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREP 227

Query: 204 RRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHS-TAFNPQ 262
           RRHRQKLDD +KP    FS+RLS+L ++   +MRV      P  NPR SLN + + FNPQ
Sbjct: 228 RRHRQKLDD-SKPS--LFSDRLSDLGRIPHPSMRVG----VPPQNPRPSLNSAPSPFNPQ 280

Query: 263 PQSQMQDTRQIQPSPPWSYDQSY-QYLGSIASPSVHPATPISPGRASGMTTLSAELSSRL 321
            QSQ+ D RQ Q SPPWSYDQSY  YL  + SPS+H  TP+S  R +G+  ++ ++  R+
Sbjct: 281 GQSQITDPRQAQSSPPWSYDQSYPSYLSQMTSPSIHSTTPLSSTRGTGLPAIT-DVPRRI 339

Query: 322 STAPDLTAFSDPRQFPALPSI-----SDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATR 376
           S A +L  FSDPRQFP++ S+     S+PRMHYP  FTY+P PVTSG+ +GMSA    T 
Sbjct: 340 SGASELGPFSDPRQFPSISSLTESRFSNPRMHYPATFTYTP-PVTSGMSLGMSA---TTH 395

Query: 377 YHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-GGERSPPRILPPCTNA 435
           YHTYLPPPYPGSSQ+Q GPFQ SS  Y LYYG S+GSYQF MV GG+RSP R+LPPCT  
Sbjct: 396 YHTYLPPPYPGSSQSQSGPFQTSSTPY-LYYGTSSGSYQFPMVPGGDRSPSRMLPPCTTT 454

Query: 436 STGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480
           S GS LLNP+LPNQ+D V+A+GSHS+SPT +  S R++E+VWRPY
Sbjct: 455 SNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSGRMDESVWRPY 499


>gi|226442783 runt-related transcription factor 2 isoform a [Homo
           sapiens]
          Length = 521

 Score =  566 bits (1459), Expect = e-161
 Identities = 314/547 (57%), Positives = 373/547 (68%), Gaps = 93/547 (17%)

Query: 1   MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPL-- 58
           MAS+S+F +     Q F               D STSRRF+PPS++L PGKMS+  P+  
Sbjct: 1   MASNSLFSTVTPCQQNFF-------------WDPSTSRRFSPPSSSLQPGKMSDVSPVVA 47

Query: 59  ---------------------------------GAPDAGAALAGKLRS--GDRSMVEVLA 83
                                             A  A AA   +LR    +R+MVE++A
Sbjct: 48  AQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIA 107

Query: 84  DHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAE 143
           DHP ELVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALG+VPDGT+VTVMAGNDENYSAE
Sbjct: 108 DHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAE 167

Query: 144 LRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREP 203
           LRNA+A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK+TVDGPREP
Sbjct: 168 LRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREP 227

Query: 204 RRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHS-TAFNPQ 262
           RRHRQKLDD +KP    FS+RLS+L ++   +MRV      P  NPR SLN + + FNPQ
Sbjct: 228 RRHRQKLDD-SKPS--LFSDRLSDLGRIPHPSMRVG----VPPQNPRPSLNSAPSPFNPQ 280

Query: 263 PQSQMQDTRQIQPSPPWSYDQSY-QYLGSIASPSVHPATPISPGRASGMTTLSAELSSRL 321
            QSQ+ D RQ Q SPPWSYDQSY  YL  + SPS+H  TP+S  R +G+  ++ ++  R+
Sbjct: 281 GQSQITDPRQAQSSPPWSYDQSYPSYLSQMTSPSIHSTTPLSSTRGTGLPAIT-DVPRRI 339

Query: 322 ST----------------------APDLTAFSDPRQFPALPSI-----SDPRMHYPGAFT 354
           S                       A +L  FSDPRQFP++ S+     S+PRMHYP  FT
Sbjct: 340 SDDDTATSDFCLWPSTLSKKSQAGASELGPFSDPRQFPSISSLTESRFSNPRMHYPATFT 399

Query: 355 YSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSY 414
           Y+P PVTSG+ +GMSA    T YHTYLPPPYPGSSQ+Q GPFQ SS  Y LYYG S+GSY
Sbjct: 400 YTP-PVTSGMSLGMSA---TTHYHTYLPPPYPGSSQSQSGPFQTSSTPY-LYYGTSSGSY 454

Query: 415 QFSMV-GGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLE 473
           QF MV GG+RSP R+LPPCT  S GS LLNP+LPNQ+D V+A+GSHS+SPT +  S R++
Sbjct: 455 QFPMVPGGDRSPSRMLPPCTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSGRMD 514

Query: 474 EAVWRPY 480
           E+VWRPY
Sbjct: 515 ESVWRPY 521


>gi|66934969 runt-related transcription factor 2 isoform c [Homo
           sapiens]
          Length = 507

 Score =  565 bits (1456), Expect = e-161
 Identities = 307/515 (59%), Positives = 363/515 (70%), Gaps = 80/515 (15%)

Query: 33  DASTSRRFTPPSTALSPGKMSEALPL---------------------------------- 58
           D STSRRF+PPS++L PGKMS+  P+                                  
Sbjct: 6   DPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAA 65

Query: 59  -GAPDAGAALAGKLRS--GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIA 115
             A  A AA   +LR    +R+MVE++ADHP ELVRTDSPNFLCSVLP+HWRCNKTLP+A
Sbjct: 66  AAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVA 125

Query: 116 FKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTL 175
           FKVVALG+VPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRGKSFTL
Sbjct: 126 FKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTL 185

Query: 176 TITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTA 235
           TITVFTNPPQVATYHRAIK+TVDGPREPRRHRQKLDD +KP    FS+RLS+L ++   +
Sbjct: 186 TITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDD-SKPS--LFSDRLSDLGRIPHPS 242

Query: 236 MRVSPHHPAPTPNPRASLNHS-TAFNPQPQSQMQDTRQIQPSPPWSYDQSY-QYLGSIAS 293
           MRV      P  NPR SLN + + FNPQ QSQ+ D RQ Q SPPWSYDQSY  YL  + S
Sbjct: 243 MRVG----VPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPWSYDQSYPSYLSQMTS 298

Query: 294 PSVHPATPISPGRASGMTTLSAELSSRLST----------------------APDLTAFS 331
           PS+H  TP+S  R +G+  ++ ++  R+S                       A +L  FS
Sbjct: 299 PSIHSTTPLSSTRGTGLPAIT-DVPRRISDDDTATSDFCLWPSTLSKKSQAGASELGPFS 357

Query: 332 DPRQFPALPSI-----SDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYP 386
           DPRQFP++ S+     S+PRMHYP  FTY+P PVTSG+ +GMSA    T YHTYLPPPYP
Sbjct: 358 DPRQFPSISSLTESRFSNPRMHYPATFTYTP-PVTSGMSLGMSA---TTHYHTYLPPPYP 413

Query: 387 GSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-GGERSPPRILPPCTNASTGSALLNPS 445
           GSSQ+Q GPFQ SS  Y LYYG S+GSYQF MV GG+RSP R+LPPCT  S GS LLNP+
Sbjct: 414 GSSQSQSGPFQTSSTPY-LYYGTSSGSYQFPMVPGGDRSPSRMLPPCTTTSNGSTLLNPN 472

Query: 446 LPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480
           LPNQ+D V+A+GSHS+SPT +  S R++E+VWRPY
Sbjct: 473 LPNQNDGVDADGSHSSSPTVLNSSGRMDESVWRPY 507


>gi|72534652 runt-related transcription factor 3 isoform 1 [Homo
           sapiens]
          Length = 429

 Score =  492 bits (1266), Expect = e-139
 Identities = 282/499 (56%), Positives = 332/499 (66%), Gaps = 89/499 (17%)

Query: 1   MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTAL----SPGKMSEAL 56
           MAS+SIF+SFP+Y   F+R             D STSRRFTPPS A       GKM E  
Sbjct: 1   MASNSIFDSFPTYSPTFIR-------------DPSTSRRFTPPSPAFPCGGGGGKMGENS 47

Query: 57  PLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAF 116
              +  A     G+ R   RSMV+VLADH GELVRTDSPNFLCSVLP+HWRCNKTLP+AF
Sbjct: 48  GALSAQAAVGPGGRARPEVRSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAF 107

Query: 117 KVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLT 176
           KVVALGDVPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRGKSFTLT
Sbjct: 108 KVVALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLT 167

Query: 177 ITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAM 236
           ITVFTNP QVATYHRAIK+TVDGPREPRRHRQKL+DQTKP    F +R  +LE+LR   M
Sbjct: 168 ITVFTNPTQVATYHRAIKVTVDGPREPRRHRQKLEDQTKP----FPDRFGDLERLR---M 220

Query: 237 RVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQP-SPPWSYDQSYQYLGSIASPS 295
           RV+P     TP+PR SL+ ++ F+ QPQ+ +Q T ++ P S P  +D+S+          
Sbjct: 221 RVTP----STPSPRGSLSTTSHFSSQPQTPIQGTSELNPFSDPRQFDRSF---------- 266

Query: 296 VHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPG---- 351
                                      T P LT      +FP      DPRMHYPG    
Sbjct: 267 --------------------------PTLPTLT----ESRFP------DPRMHYPGAMSA 290

Query: 352 AFTYSPTPV-TSGIGIGMSAMGSATRY-HTYLPPPYPGSSQAQGGPFQASSPSYHLYYGA 409
           AF YS TP  TS   + ++ M + +R+ HTYLPPPYPG+ Q Q GPFQA+   YHLYYG 
Sbjct: 291 AFPYSATPSGTSISSLSVAGMPATSRFHHTYLPPPYPGAPQNQSGPFQANPSPYHLYYGT 350

Query: 410 SAGSYQFSMV-----GGERSPPRILPPCTNASTGSA---LLNPSLPNQSDVVEAEGSHSN 461
           S+GSYQFSMV     GG+RSP R+L  CT+++   A   L+NPSL  QSD VEA+GSHSN
Sbjct: 351 SSGSYQFSMVAGSSSGGDRSPTRMLASCTSSAASVAAGNLMNPSLGGQSDGVEADGSHSN 410

Query: 462 SPTNMAPSARLEEAVWRPY 480
           SPT ++   R++EAVWRPY
Sbjct: 411 SPTALSTPGRMDEAVWRPY 429


>gi|169790837 runt-related transcription factor 1 isoform AML1a
           [Homo sapiens]
          Length = 250

 Score =  479 bits (1232), Expect = e-135
 Identities = 238/247 (96%), Positives = 241/247 (97%), Gaps = 4/247 (1%)

Query: 33  DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 92
           DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT
Sbjct: 6   DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 65

Query: 93  DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 152
           DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK
Sbjct: 66  DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 125

Query: 153 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 212
           NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD
Sbjct: 126 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 185

Query: 213 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ 272
           QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQ+   
Sbjct: 186 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQE--- 242

Query: 273 IQPSPPW 279
            + + PW
Sbjct: 243 -EDTAPW 248


>gi|4757918 runt-related transcription factor 3 isoform 2 [Homo
           sapiens]
          Length = 415

 Score =  476 bits (1226), Expect = e-134
 Identities = 270/467 (57%), Positives = 316/467 (67%), Gaps = 76/467 (16%)

Query: 33  DASTSRRFTPPSTAL----SPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGE 88
           D STSRRFTPPS A       GKM E     +  A     G+ R   RSMV+VLADH GE
Sbjct: 6   DPSTSRRFTPPSPAFPCGGGGGKMGENSGALSAQAAVGPGGRARPEVRSMVDVLADHAGE 65

Query: 89  LVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNAT 148
           LVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALGDVPDGT+VTVMAGNDENYSAELRNA+
Sbjct: 66  LVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNAS 125

Query: 149 AAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQ 208
           A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNP QVATYHRAIK+TVDGPREPRRHRQ
Sbjct: 126 AVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREPRRHRQ 185

Query: 209 KLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQ 268
           KL+DQTKP    F +R  +LE+LR   MRV+P     TP+PR SL+ ++ F+ QPQ+ +Q
Sbjct: 186 KLEDQTKP----FPDRFGDLERLR---MRVTP----STPSPRGSLSTTSHFSSQPQTPIQ 234

Query: 269 DTRQIQP-SPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDL 327
            T ++ P S P  +D+S+                                     T P L
Sbjct: 235 GTSELNPFSDPRQFDRSF------------------------------------PTLPTL 258

Query: 328 TAFSDPRQFPALPSISDPRMHYPG----AFTYSPTPV-TSGIGIGMSAMGSATRY-HTYL 381
           T      +FP      DPRMHYPG    AF YS TP  TS   + ++ M + +R+ HTYL
Sbjct: 259 T----ESRFP------DPRMHYPGAMSAAFPYSATPSGTSISSLSVAGMPATSRFHHTYL 308

Query: 382 PPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-----GGERSPPRILPPCTNAS 436
           PPPYPG+ Q Q GPFQA+   YHLYYG S+GSYQFSMV     GG+RSP R+L  CT+++
Sbjct: 309 PPPYPGAPQNQSGPFQANPSPYHLYYGTSSGSYQFSMVAGSSSGGDRSPTRMLASCTSSA 368

Query: 437 TGSA---LLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480
              A   L+NPSL  QSD VEA+GSHSNSPT ++   R++EAVWRPY
Sbjct: 369 ASVAAGNLMNPSLGGQSDGVEADGSHSNSPTALSTPGRMDEAVWRPY 415


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 37/227 (16%)

Query: 240 PHHPAPTPNPRASLNHSTAFNPQPQSQM-QDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
           P  PAP+     +L+   A+ PQPQSQ  Q T   Q   P   + S    GS AS     
Sbjct: 565 PQQPAPS-----TLSQQAAY-PQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQAS----- 613

Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPT 358
           + P       G   ++  L SR S+ PDL+            SI D  M   GA   SP 
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSG-----------SIDDLPMGTEGAL--SPG 660

Query: 359 PVTSGIGI--GMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQF 416
             TSGI    G  +  + + +  +  P  PG      GP  +   S      + +G    
Sbjct: 661 VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIR----GPSPSPVGSPASVAQSRSGPLSP 716

Query: 417 SMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSP 463
           + V G + PPR  PP   +    ++++PS+ NQS + +  G    +P
Sbjct: 717 AAVPGNQMPPR--PP---SGQSDSIMHPSM-NQSSIAQDRGYMQRNP 757



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 48/202 (23%), Positives = 70/202 (34%), Gaps = 20/202 (9%)

Query: 259 FNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELS 318
           F+P     +   R   PSP  S     Q      SP+  P   + P   SG +      S
Sbjct: 681 FSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPS 740

Query: 319 SRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYH 378
              S+      +   ++ P +P  S P+   PG+      P    I  G   MGS  +  
Sbjct: 741 MNQSSIAQDRGYM--QRNPQMPQYSSPQ---PGSALSPRQPSGGQIHTG---MGSYQQNS 792

Query: 379 TYLPPPYPGSSQAQGG----PFQASSPSYHLYYGASAGSYQFSMVGGER------SPPRI 428
                P  G    QGG    P   + P+ +      AG       GG+        P   
Sbjct: 793 MGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGT 852

Query: 429 LPP--CTNASTGSALLNPSLPN 448
           LPP   ++AS G+    P++ N
Sbjct: 853 LPPGRMSHASMGNRPYGPNMAN 874


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 37/227 (16%)

Query: 240 PHHPAPTPNPRASLNHSTAFNPQPQSQM-QDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
           P  PAP+     +L+   A+ PQPQSQ  Q T   Q   P   + S    GS AS     
Sbjct: 565 PQQPAPS-----TLSQQAAY-PQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQAS----- 613

Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPT 358
           + P       G   ++  L SR S+ PDL+            SI D  M   GA   SP 
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSG-----------SIDDLPMGTEGAL--SPG 660

Query: 359 PVTSGIGI--GMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQF 416
             TSGI    G  +  + + +  +  P  PG      GP  +   S      + +G    
Sbjct: 661 VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIR----GPSPSPVGSPASVAQSRSGPLSP 716

Query: 417 SMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSP 463
           + V G + PPR  PP   +    ++++PS+ NQS + +  G    +P
Sbjct: 717 AAVPGNQMPPR--PP---SGQSDSIMHPSM-NQSSIAQDRGYMQRNP 757



 Score = 30.4 bits (67), Expect = 3.7
 Identities = 48/202 (23%), Positives = 70/202 (34%), Gaps = 20/202 (9%)

Query: 259 FNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELS 318
           F+P     +   R   PSP  S     Q      SP+  P   + P   SG +      S
Sbjct: 681 FSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPS 740

Query: 319 SRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYH 378
              S+      +   ++ P +P  S P+   PG+      P    I  G   MGS  +  
Sbjct: 741 MNQSSIAQDRGYM--QRNPQMPQYSSPQ---PGSALSPRQPSGGQIHTG---MGSYQQNS 792

Query: 379 TYLPPPYPGSSQAQGG----PFQASSPSYHLYYGASAGSYQFSMVGGER------SPPRI 428
                P  G    QGG    P   + P+ +      AG       GG+        P   
Sbjct: 793 MGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGT 852

Query: 429 LPP--CTNASTGSALLNPSLPN 448
           LPP   ++AS G+    P++ N
Sbjct: 853 LPPGRMSHASMGNRPYGPNMAN 874


>gi|28558973 mediator complex subunit 14 [Homo sapiens]
          Length = 1454

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 57/236 (24%), Positives = 84/236 (35%), Gaps = 24/236 (10%)

Query: 245  PTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISP 304
            P P  +  LN     N   + +  +     PSP    D     +  +  P      P  P
Sbjct: 955  PAPGLKTFLNMFVDSNQDARRRSVNEDDNPPSPIGG-DMMDSLISQLQPPPQQQPFPKQP 1013

Query: 305  GRASG--MTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDP-RMHYPGAFTYSPTPVT 361
            G +    +T+      S ++ +P +     P    A  S S   R   P +F  +P P +
Sbjct: 1014 GTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSS 1073

Query: 362  SGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGG 421
             GI IG  A  S    H  L P           P+   SPS        AG++  S    
Sbjct: 1074 HGISIGPGA--SFASPHGTLDP---------SSPYTMVSPS------GRAGNWPGSPQVS 1116

Query: 422  ERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVW 477
              SP   +P  + A+     L+  +P+ S    A  S    PTNM P  +L +  W
Sbjct: 1117 GPSPAARMPGMSPANPS---LHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQRSW 1169


>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
          Length = 667

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 30/203 (14%)

Query: 227 ELEQLRRTAMRVSPHHP------APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPS 276
           + +Q+ RT + ++   P      AP P PR      +  S A   Q     +     QPS
Sbjct: 463 QAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS 522

Query: 277 PPWSYDQSYQYLGSIASPSVHPATPISPGR-ASGMTTLS------------AELSSRLST 323
           PP +  +      S ++PS      +S     SG TT S             +L S  +T
Sbjct: 523 PPPT--KFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATT 580

Query: 324 APDLTAFSDPRQFPALPSIS-DPRMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYH 378
           AP  TA S P        +S  P     G  T  P+PV    +S   +  SA+    +  
Sbjct: 581 APPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEA 640

Query: 379 TYLPPPYPGSSQAQGGPFQASSP 401
              PPP PG+ +A G    + SP
Sbjct: 641 GDSPPPAPGTPKANGSQPNSGSP 663


>gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]
          Length = 677

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 30/203 (14%)

Query: 227 ELEQLRRTAMRVSPHHP------APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPS 276
           + +Q+ RT + ++   P      AP P PR      +  S A   Q     +     QPS
Sbjct: 473 QAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS 532

Query: 277 PPWSYDQSYQYLGSIASPSVHPATPISPGR-ASGMTTLS------------AELSSRLST 323
           PP +  +      S ++PS      +S     SG TT S             +L S  +T
Sbjct: 533 PPPT--KFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATT 590

Query: 324 APDLTAFSDPRQFPALPSIS-DPRMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYH 378
           AP  TA S P        +S  P     G  T  P+PV    +S   +  SA+    +  
Sbjct: 591 APPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEA 650

Query: 379 TYLPPPYPGSSQAQGGPFQASSP 401
              PPP PG+ +A G    + SP
Sbjct: 651 GDSPPPAPGTPKANGSQPNSGSP 673


>gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]
          Length = 677

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 30/203 (14%)

Query: 227 ELEQLRRTAMRVSPHHP------APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPS 276
           + +Q+ RT + ++   P      AP P PR      +  S A   Q     +     QPS
Sbjct: 473 QAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS 532

Query: 277 PPWSYDQSYQYLGSIASPSVHPATPISPGR-ASGMTTLS------------AELSSRLST 323
           PP +  +      S ++PS      +S     SG TT S             +L S  +T
Sbjct: 533 PPPT--KFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATT 590

Query: 324 APDLTAFSDPRQFPALPSIS-DPRMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYH 378
           AP  TA S P        +S  P     G  T  P+PV    +S   +  SA+    +  
Sbjct: 591 APPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEA 650

Query: 379 TYLPPPYPGSSQAQGGPFQASSP 401
              PPP PG+ +A G    + SP
Sbjct: 651 GDSPPPAPGTPKANGSQPNSGSP 673


>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
           sapiens]
          Length = 1038

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 216 PGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFN-PQPQSQMQDTRQIQ 274
           P S   +E    L+Q     ++     PAP+P+P            P P    +   Q+ 
Sbjct: 698 PSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGGDDKPQVPPRVPIPPRPTRPHVQLS 757

Query: 275 PSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTL----SAELSSRLSTAPDLTAF 330
           P+PP   +++ Q+ G  + P V P  P+SP  +   + L    S+ L  RLS++P  T  
Sbjct: 758 PAPP-GEEETSQWPGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLPPRLSSSPGKT-M 815

Query: 331 SDPRQFPALPSISDPRM 347
              + F + P  + P++
Sbjct: 816 PTTQSFASDPKYATPQV 832


>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
           sapiens]
          Length = 1086

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 216 PGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFN-PQPQSQMQDTRQIQ 274
           P S   +E    L+Q     ++     PAP+P+P            P P    +   Q+ 
Sbjct: 776 PSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGGDDKPQVPPRVPIPPRPTRPHVQLS 835

Query: 275 PSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTL----SAELSSRLSTAPDLTAF 330
           P+PP   +++ Q+ G  + P V P  P+SP  +   + L    S+ L  RLS++P  T  
Sbjct: 836 PAPP-GEEETSQWPGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLPPRLSSSPGKT-M 893

Query: 331 SDPRQFPALPSISDPRM 347
              + F + P  + P++
Sbjct: 894 PTTQSFASDPKYATPQV 910


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 62/239 (25%), Positives = 84/239 (35%), Gaps = 32/239 (13%)

Query: 235 AMRVSPHHPAPTPNPRASLNHSTAFN---PQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI 291
           ++R  P  PA  P P + +++S A     P   S    +   Q S P S+    Q  G  
Sbjct: 538 SLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ--GPQ 595

Query: 292 ASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPG 351
            +P   P  P        +TT SA LS+ ++T     A       P  P     R   PG
Sbjct: 596 GAPYPFPPVPT-------VTTSSATLSTVIATVASSPAGYKTASPPGPPPYGK-RAPSPG 647

Query: 352 AFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQG-GPFQASSPSYHLYYGAS 410
           A+  +  P            GS   + T  PP Y G+S   G G F+  SP        +
Sbjct: 648 AYKTATPPGYKP--------GSPPSFRTGTPPGYRGTSPPAGPGTFKPGSP--------T 691

Query: 411 AGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPS 469
            G       G    P   LPP   A      L+ +   Q    E E   S  P   +PS
Sbjct: 692 VGPGPLPPAGPSGLPS--LPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 748



 Score = 34.3 bits (77), Expect = 0.26
 Identities = 58/230 (25%), Positives = 83/230 (36%), Gaps = 36/230 (15%)

Query: 235 AMRVSPHHPAPTPNPRA-SLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIAS 293
           A +  P +P   P P + S+++      QP    Q      P PP  Y +       +A+
Sbjct: 401 ASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRL------LAN 454

Query: 294 PSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY---- 349
            + HP  P  P   +  T         +ST          +Q          + H+    
Sbjct: 455 SNAHPG-PFPPSTGAQSTA-----HPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG 508

Query: 350 ---PGAFTYSPTPVTSGIG-----IGMS-AMGSATRYH---TYLPPPYPGSSQAQGGP-F 396
              PGAF   P P+  G         MS ++GS   Y     +LPPP+   S +Q GP  
Sbjct: 509 PPPPGAF---PHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNG 565

Query: 397 QASSPSYHLYYGASAGSYQFSMVGGERSP---PRILPPCTNASTGSALLN 443
              S S +     S GSY  S     + P   P   PP    +T SA L+
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 62/239 (25%), Positives = 84/239 (35%), Gaps = 32/239 (13%)

Query: 235 AMRVSPHHPAPTPNPRASLNHSTAFN---PQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI 291
           ++R  P  PA  P P + +++S A     P   S    +   Q S P S+    Q  G  
Sbjct: 538 SLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ--GPQ 595

Query: 292 ASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPG 351
            +P   P  P        +TT SA LS+ ++T     A       P  P     R   PG
Sbjct: 596 GAPYPFPPVPT-------VTTSSATLSTVIATVASSPAGYKTASPPGPPPYGK-RAPSPG 647

Query: 352 AFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQG-GPFQASSPSYHLYYGAS 410
           A+  +  P            GS   + T  PP Y G+S   G G F+  SP        +
Sbjct: 648 AYKTATPPGYKP--------GSPPSFRTGTPPGYRGTSPPAGPGTFKPGSP--------T 691

Query: 411 AGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPS 469
            G       G    P   LPP   A      L+ +   Q    E E   S  P   +PS
Sbjct: 692 VGPGPLPPAGPSGLPS--LPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 748



 Score = 34.3 bits (77), Expect = 0.26
 Identities = 58/230 (25%), Positives = 83/230 (36%), Gaps = 36/230 (15%)

Query: 235 AMRVSPHHPAPTPNPRA-SLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIAS 293
           A +  P +P   P P + S+++      QP    Q      P PP  Y +       +A+
Sbjct: 401 ASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRL------LAN 454

Query: 294 PSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY---- 349
            + HP  P  P   +  T         +ST          +Q          + H+    
Sbjct: 455 SNAHPG-PFPPSTGAQSTA-----HPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG 508

Query: 350 ---PGAFTYSPTPVTSGIG-----IGMS-AMGSATRYH---TYLPPPYPGSSQAQGGP-F 396
              PGAF   P P+  G         MS ++GS   Y     +LPPP+   S +Q GP  
Sbjct: 509 PPPPGAF---PHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNG 565

Query: 397 QASSPSYHLYYGASAGSYQFSMVGGERSP---PRILPPCTNASTGSALLN 443
              S S +     S GSY  S     + P   P   PP    +T SA L+
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615


>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
          Length = 1970

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 55/222 (24%), Positives = 82/222 (36%), Gaps = 25/222 (11%)

Query: 234  TAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIAS 293
            T+   SP  P+ +P   +    S +++P   S    +    P+ P     S  Y  S  S
Sbjct: 1632 TSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTS 1689

Query: 294  PSVHPATP----ISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY 349
            PS  P +P     SP  +    + S    S   T+P  +  S P   P  PS S    +Y
Sbjct: 1690 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPNY 1748

Query: 350  -PGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYG 408
             P +  Y+PT          S   ++  Y    P   P S       +  +SPSY     
Sbjct: 1749 SPTSPNYTPT--------SPSYSPTSPSYSPTSPNYTPTSPN-----YSPTSPSY----S 1791

Query: 409  ASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQS 450
             ++ SY  +      S PR  P     +  S   +PS P+ S
Sbjct: 1792 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYS 1833



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 52/193 (26%), Positives = 74/193 (38%), Gaps = 22/193 (11%)

Query: 234  TAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI-- 291
            T+   SP  P  TP        S +++P   S    +    PS P    QS  Y  S   
Sbjct: 1765 TSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPS 1824

Query: 292  ---ASPSVHPA----TPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISD 344
               +SPS  P     TP SP  +      +        T+P  +  S P+  P  P+ S 
Sbjct: 1825 YSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTS-PKYSPTSPTYSP 1883

Query: 345  PRMHY-PGAFTYSPT-PVTSGIGIGMSAMG-----SATRYH----TYLPPPYPGSSQAQG 393
                Y P + TYSPT PV +      S        ++ +Y     TY P    GS+ +  
Sbjct: 1884 TTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPT 1943

Query: 394  GP-FQASSPSYHL 405
             P +  +SP+Y L
Sbjct: 1944 SPGYSPTSPTYSL 1956



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 49/185 (26%), Positives = 66/185 (35%), Gaps = 36/185 (19%)

Query: 293  SPSVHP----ATPI----SPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISD 344
            SP++ P    ATP     SP   SGMT  +A  S   S A D + FS P   PA      
Sbjct: 1514 SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSP--SAASDASGFS-PGYSPA------ 1564

Query: 345  PRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYH 404
                      +SPTP          + GS      Y+P P    S +      A  P   
Sbjct: 1565 ----------WSPTP---------GSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP 1605

Query: 405  LYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPT 464
              Y   + SY  +      + P   P   N S  S   +P+ P+ S    +    S S +
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665

Query: 465  NMAPS 469
              +PS
Sbjct: 1666 PTSPS 1670


>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
            sapiens]
          Length = 1835

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 26/164 (15%)

Query: 235  AMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ--IQPSPPWSYDQSYQYLGSIA 292
            A RV   + AP P P   ++ +    P  Q Q Q T+Q  +  S P    Q+Y       
Sbjct: 888  ASRVGFQNIAPKPLPSQQVSSTVVQQPIQQPQ-QPTQQSVVIVSQPAQQGQTY------- 939

Query: 293  SPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGA 352
            +P++H     +P        L A  + +L+  P++T  S P   PA  +        P A
Sbjct: 940  APAIHQIVLANPA------ALPAGQTVQLTGQPNITPSSSPSPVPATNN------QVPTA 987

Query: 353  FTYSPTPVTSGIGIGMSAMGSATR----YHTYLPPPYPGSSQAQ 392
             + S TP + G    +S M S  R     H+  PPP     Q Q
Sbjct: 988  MSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQQVQVQVQ 1031


>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
          Length = 824

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 38/118 (32%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 224 RLSELEQL--RRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSY 281
           R S+L Q   R  +  VSP   A    P  SLN +T     P S  QD  Q QPSP +S+
Sbjct: 615 RSSQLMQSSGRSGSSLVSPFSSATAALP-PSLNLTT-----PASTSQDASQCQPSPDFSH 668

Query: 282 DQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSR-LSTAPDLTAFSDPRQFPA 338
           D+  + L S       P  P+ PG            + R +  A   T F +P   PA
Sbjct: 669 DRQLRLLLS------QPIQPMMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPA 720


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 48/191 (25%), Positives = 59/191 (30%), Gaps = 16/191 (8%)

Query: 240 PHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASP--SVH 297
           P  P P P P            QP  Q    +Q  P  P  + Q +Q       P  S  
Sbjct: 56  PKPPIPPPPPHQQ-------QQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSK 108

Query: 298 PATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSP 357
           P     PG A G+ +     SS     P  T+ + P   P       P +         P
Sbjct: 109 PVVAQGPGPAPGVGSAPPASSSAPPATPP-TSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 167

Query: 358 TPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQ--AQGGPFQASSPSYHLYYGASAGSYQ 415
           TP +SG+       G        +P P PG  Q    GGP     P          G   
Sbjct: 168 TPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPG----GPKPGGGPG 223

Query: 416 FSMVGGERSPP 426
            S  GG   PP
Sbjct: 224 LSTPGGHPKPP 234


>gi|116284392 mucin 2 precursor [Homo sapiens]
          Length = 5179

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 243  PAPTPNPRASLNHSTA----FNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
            P PT  P   ++ +T       P P +         PSPP +   +     + + P+  P
Sbjct: 1448 PPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTP 1507

Query: 299  ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPT 358
             TP +       TT  +  ++  +T P  T  S P   P  P  S   +  P   T SP 
Sbjct: 1508 ITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTL--PPTTTPSPP 1565

Query: 359  PVTS 362
            P T+
Sbjct: 1566 PTTT 1569



 Score = 34.3 bits (77), Expect = 0.26
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 245  PTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI-----ASPSVHPA 299
            PT    A +   T  NP P+S    T +   SP     +S   L ++      + +  P+
Sbjct: 4198 PTHTSTAPIAELTTSNPPPESSTPQTSRSTSSP---LTESTTLLSTLPPAIEMTSTAPPS 4254

Query: 300  TPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTP 359
            TP +P   SG  TLS   S+  S  P            + P+ S  +     A+T +PTP
Sbjct: 4255 TPTAPTTTSGGHTLSPPPSTTTS-PPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTP 4313

Query: 360  VTS 362
            +++
Sbjct: 4314 LST 4316



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 51/229 (22%), Positives = 75/229 (32%), Gaps = 17/229 (7%)

Query: 243  PAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPI 302
            P   P    +L  +T  +P P +         PSPP +   S   + +   P   P T  
Sbjct: 1546 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPP---PTTTP 1602

Query: 303  SPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTS 362
            SP      TT +    +   + P  T  + P     LP  + P    P   T +P P T+
Sbjct: 1603 SP----PTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSP--PPTTTTTPPPTTT 1656

Query: 363  GIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGE 422
                  +         T  PP    SS     P    SP        S  +   S +   
Sbjct: 1657 PSPPTTTTPSPPITTTTTPPPTTTPSSPITTTP----SPPTTTMTTPSPTTTPSSPITTT 1712

Query: 423  RSPPRIL---PPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAP 468
             +P       PP T  +T S    PS P  + +     + ++SP    P
Sbjct: 1713 TTPSSTTTPSPPPTTMTTPSPTTTPS-PPTTTMTTLPPTTTSSPLTTTP 1760



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 246  TPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPG 305
            TP+P      +T  +P P S         PSPP +   +         P+  P+ PI+  
Sbjct: 1398 TPSPP-----TTTPSPPPTSTTTLPPTTTPSPPTTTTTT-------PPPTTTPSPPITTT 1445

Query: 306  RASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTS 362
                 TT  +   S  +T P  T  S P   P+ P+ +      P   T +P P T+
Sbjct: 1446 TTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSP---PTTTTTTPPPTTT 1499



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 21/133 (15%)

Query: 243  PAPTPNPRASLNHS----TAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
            P  TP+P  +   S    T   P P +         PSPP +   +     + +SP    
Sbjct: 1653 PTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTT 1712

Query: 299  ATPISPGRAS---------GMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY 349
             TP S    S           TT  +  ++ ++T P  T  S     P  PSI+ P    
Sbjct: 1713 TTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPP---- 1768

Query: 350  PGAFTYSPTPVTS 362
                T+SP   T+
Sbjct: 1769 ----TFSPFSTTT 1777



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 243  PAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPI 302
            P+P P    +L  +T  +P   +         PSPP +         +   P+  P+ PI
Sbjct: 1406 PSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPIT-------TTTTPPPTTTPSPPI 1458

Query: 303  SPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALP---SISDPRMHYPGAFTYSP-T 358
            S       TT         + +P  T  S P   P+ P   + + P    P   T +P T
Sbjct: 1459 STTTTPPPTT---------TPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPIT 1509

Query: 359  PVTSGIGIGMSAMGSATRYHTYLPPP 384
            P  S   +  +   S     T  PPP
Sbjct: 1510 PPASTTTLPPTTTPSPPTTTTTTPPP 1535



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 2/124 (1%)

Query: 240  PHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ--IQPSPPWSYDQSYQYLGSIASPSVH 297
            P     TP P  + +  T   P P +    T      PSPP +   +     + + P+  
Sbjct: 1565 PPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTT 1624

Query: 298  PATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSP 357
            P TP +       TT  +   +  +T P  T  S P      P I+      P     SP
Sbjct: 1625 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSP 1684

Query: 358  TPVT 361
               T
Sbjct: 1685 ITTT 1688


>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
          Length = 669

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 48/169 (28%), Positives = 67/169 (39%), Gaps = 22/169 (13%)

Query: 249 PRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRAS 308
           P ASL     +  QP +    + + QPS          Y G +ASPS   A   S G   
Sbjct: 253 PSASLG--VGYRTQPMTAQAASYRAQPS----VSLGAPYRGQLASPSSQSAAASSLGPYG 306

Query: 309 GMTTLSAELSS---RLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIG 365
           G    ++ LSS   + + A  L ++    Q  +L S  +    Y GA         S  G
Sbjct: 307 GAQPSASALSSYGGQAAAASSLNSYG--AQGSSLASYGNQPSSY-GA------QAASSYG 357

Query: 366 IGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSY 414
           +      +A+ Y+T       GS  AQ   + A S +  L YGA A SY
Sbjct: 358 V----RAAASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASY 402


>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
          Length = 667

 Score = 37.4 bits (85), Expect = 0.030
 Identities = 50/180 (27%), Positives = 68/180 (37%), Gaps = 24/180 (13%)

Query: 244 APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPA 299
           AP P PR      +  S A   Q     +     QPSPP +  +      S ++PS    
Sbjct: 486 APQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPT--KFIVMSSSSSAPSTQQV 543

Query: 300 TPISPGR-ASGMTTLS------------AELSSRLSTAPDLTAFSDPRQFPALPSIS-DP 345
             +S     SG TT S             +L S  +TAP  TA S P        +S  P
Sbjct: 544 LSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPP 603

Query: 346 RMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSP 401
                G  T  P+PV    +S   +  SA+    +     PPP PG+ +A G    + SP
Sbjct: 604 TGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSP 663


>gi|32171215 CREB regulated transcription coactivator 2 [Homo
           sapiens]
          Length = 693

 Score = 37.4 bits (85), Expect = 0.030
 Identities = 62/260 (23%), Positives = 94/260 (36%), Gaps = 65/260 (25%)

Query: 241 HHPAPTPNPRASLNHST--AFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
           H P   P+ ++SL++    A    PQ Q+Q +      P  S  +      S+  PS+  
Sbjct: 335 HSPLSHPSLQSSLSNPNLQASLSSPQPQLQGSHSHPSLPASSLARHVLPTTSLGHPSL-- 392

Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPS--ISDP------RMHYP 350
           + P     +S  +T S  L +    A    A    R+ P  P   ++ P      +   P
Sbjct: 393 SAPALSSSSSSSSTSSPVLGAPSYPASTPGASPHHRRVPLSPLSLLAGPADARRSQQQLP 452

Query: 351 GAF--TYSPT--PVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLY 406
             F  T SPT   +T G+ +  S + +  R      PPYP SS                 
Sbjct: 453 KQFSPTMSPTLSSITQGVPLDTSKLSTDQRL-----PPYPYSS----------------- 490

Query: 407 YGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEG-------SH 459
                             P  +LP  T   T  +L  P LP+QS  V++ G       SH
Sbjct: 491 ------------------PSLVLP--TQPHTPKSLQQPGLPSQSCSVQSSGGQPPGRQSH 530

Query: 460 SNSPTNMAPSARLEEAVWRP 479
             +P    PS   +++  RP
Sbjct: 531 YGTPYPPGPSGHGQQSYHRP 550


>gi|45827755 transforming, acidic coiled-coil containing protein 2
           isoform b [Homo sapiens]
          Length = 1094

 Score = 37.4 bits (85), Expect = 0.030
 Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 29/187 (15%)

Query: 246 TPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPI--- 302
           T + + +L+  T  + QP    Q+ ++ Q   P S D        +A   + PA P    
Sbjct: 7   TSDNQRTLSAQTPRSAQPPGNSQNIKRKQQDTPGSPDHRDASSSPVADDIIQPAAPADLE 66

Query: 303 SPGRASG----------MTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGA 352
           SP  A+            T L A+ SS    A +    + P + P  P    P +     
Sbjct: 67  SPTLAASSYHGDVVGQVSTDLIAQRSSDSEEAFETPESTTPVKAPPAPPPPPPEVIPEPE 126

Query: 353 FTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYG---- 408
            +  P P   G G             T   P  P S   +G PF+  S S+   +     
Sbjct: 127 VSTQPPPEEPGCG-----------SETVPVPDGPRSDSVEGSPFRPPSHSFSAVFDEDKP 175

Query: 409 -ASAGSY 414
            AS+G+Y
Sbjct: 176 IASSGTY 182


>gi|13376611 zinc finger protein 703 [Homo sapiens]
          Length = 590

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 314 SAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGS 373
           S     R +T+ +L   S  R   ALP        YPGA         SG+G   +A  +
Sbjct: 464 SGPCDKRFATSEEL--LSHLRTHTALPGAEKLLAAYPGA---------SGLGSAAAAAAA 512

Query: 374 ATRYHTYLPPP-YPGS--SQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGERSP 425
           A   H +LPPP  PGS  S +   P       YH Y     G    S  GG   P
Sbjct: 513 AASCHLHLPPPAAPGSPGSLSLRNPHTLGLSRYHPY-----GKSHLSTAGGLAVP 562


>gi|193083129 MAP/microtubule affinity-regulating kinase 3 isoform d
           [Homo sapiens]
          Length = 713

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 22/91 (24%)

Query: 244 APTPN----PRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSV-HP 298
           A TP+    PR + + ST F+ QP+ +   T                Y G  ASPS+ H 
Sbjct: 531 AATPDRIRFPRGTASRST-FHGQPRERRTAT----------------YNGPPASPSLSHE 573

Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTA 329
           ATP+S  R+ G T L ++L+S+L+ + +++A
Sbjct: 574 ATPLSQTRSRGSTNLFSKLTSKLTRSRNVSA 604


>gi|46852166 MAP/microtubule affinity-regulating kinase 3 isoform c
           [Homo sapiens]
          Length = 729

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 22/91 (24%)

Query: 244 APTPN----PRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSV-HP 298
           A TP+    PR + + ST F+ QP+ +   T                Y G  ASPS+ H 
Sbjct: 547 AATPDRIRFPRGTASRST-FHGQPRERRTAT----------------YNGPPASPSLSHE 589

Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTA 329
           ATP+S  R+ G T L ++L+S+L+ + +++A
Sbjct: 590 ATPLSQTRSRGSTNLFSKLTSKLTRSRNVSA 620


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,953,341
Number of Sequences: 37866
Number of extensions: 1187210
Number of successful extensions: 4457
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 4129
Number of HSP's gapped (non-prelim): 513
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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