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Search of human proteins with 19923198
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923198 runt-related transcription factor 1 isoform AML1c
[Homo sapiens]
(480 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923198 runt-related transcription factor 1 isoform AML1c [H... 979 0.0
gi|49574546 runt-related transcription factor 1 isoform AML1b [H... 911 0.0
gi|226442791 runt-related transcription factor 2 isoform b [Homo... 578 e-165
gi|226442783 runt-related transcription factor 2 isoform a [Homo... 566 e-161
gi|66934969 runt-related transcription factor 2 isoform c [Homo ... 565 e-161
gi|72534652 runt-related transcription factor 3 isoform 1 [Homo ... 492 e-139
gi|169790837 runt-related transcription factor 1 isoform AML1a [... 479 e-135
gi|4757918 runt-related transcription factor 3 isoform 2 [Homo s... 476 e-134
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 50 3e-06
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 50 3e-06
gi|28558973 mediator complex subunit 14 [Homo sapiens] 46 7e-05
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens] 42 0.002
gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens] 42 0.002
gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens] 42 0.002
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 41 0.003
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 41 0.003
gi|55750053 atrophin-1 [Homo sapiens] 41 0.003
gi|55750041 atrophin-1 [Homo sapiens] 41 0.003
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 40 0.004
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 39 0.010
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens] 39 0.014
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 39 0.014
gi|116284392 mucin 2 precursor [Homo sapiens] 38 0.018
gi|5454064 RNA binding motif protein 14 [Homo sapiens] 38 0.018
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens] 37 0.030
gi|32171215 CREB regulated transcription coactivator 2 [Homo sap... 37 0.030
gi|45827755 transforming, acidic coiled-coil containing protein ... 37 0.030
gi|13376611 zinc finger protein 703 [Homo sapiens] 37 0.040
gi|193083129 MAP/microtubule affinity-regulating kinase 3 isofor... 37 0.040
gi|46852166 MAP/microtubule affinity-regulating kinase 3 isoform... 37 0.040
>gi|19923198 runt-related transcription factor 1 isoform AML1c [Homo
sapiens]
Length = 480
Score = 979 bits (2530), Expect = 0.0
Identities = 480/480 (100%), Positives = 480/480 (100%)
Query: 1 MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPLGA 60
MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPLGA
Sbjct: 1 MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPLGA 60
Query: 61 PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA 120
PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA
Sbjct: 61 PDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVA 120
Query: 121 LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF 180
LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF
Sbjct: 121 LGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVF 180
Query: 181 TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP 240
TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP
Sbjct: 181 TNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSP 240
Query: 241 HHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPAT 300
HHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPAT
Sbjct: 241 HHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPAT 300
Query: 301 PISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV 360
PISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV
Sbjct: 301 PISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV 360
Query: 361 TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVG 420
TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVG
Sbjct: 361 TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVG 420
Query: 421 GERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480
GERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY
Sbjct: 421 GERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480
>gi|49574546 runt-related transcription factor 1 isoform AML1b [Homo
sapiens]
Length = 453
Score = 911 bits (2354), Expect = 0.0
Identities = 448/448 (100%), Positives = 448/448 (100%)
Query: 33 DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 92
DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT
Sbjct: 6 DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 65
Query: 93 DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 152
DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK
Sbjct: 66 DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 125
Query: 153 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 212
NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD
Sbjct: 126 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 185
Query: 213 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ 272
QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ
Sbjct: 186 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ 245
Query: 273 IQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSD 332
IQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSD
Sbjct: 246 IQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSD 305
Query: 333 PRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQ 392
PRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQ
Sbjct: 306 PRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQ 365
Query: 393 GGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDV 452
GGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDV
Sbjct: 366 GGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDV 425
Query: 453 VEAEGSHSNSPTNMAPSARLEEAVWRPY 480
VEAEGSHSNSPTNMAPSARLEEAVWRPY
Sbjct: 426 VEAEGSHSNSPTNMAPSARLEEAVWRPY 453
>gi|226442791 runt-related transcription factor 2 isoform b [Homo
sapiens]
Length = 499
Score = 578 bits (1491), Expect = e-165
Identities = 314/525 (59%), Positives = 373/525 (71%), Gaps = 71/525 (13%)
Query: 1 MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPL-- 58
MAS+S+F + Q F D STSRRF+PPS++L PGKMS+ P+
Sbjct: 1 MASNSLFSTVTPCQQNFF-------------WDPSTSRRFSPPSSSLQPGKMSDVSPVVA 47
Query: 59 ---------------------------------GAPDAGAALAGKLRS--GDRSMVEVLA 83
A A AA +LR +R+MVE++A
Sbjct: 48 AQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIA 107
Query: 84 DHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAE 143
DHP ELVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALG+VPDGT+VTVMAGNDENYSAE
Sbjct: 108 DHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAE 167
Query: 144 LRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREP 203
LRNA+A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK+TVDGPREP
Sbjct: 168 LRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREP 227
Query: 204 RRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHS-TAFNPQ 262
RRHRQKLDD +KP FS+RLS+L ++ +MRV P NPR SLN + + FNPQ
Sbjct: 228 RRHRQKLDD-SKPS--LFSDRLSDLGRIPHPSMRVG----VPPQNPRPSLNSAPSPFNPQ 280
Query: 263 PQSQMQDTRQIQPSPPWSYDQSY-QYLGSIASPSVHPATPISPGRASGMTTLSAELSSRL 321
QSQ+ D RQ Q SPPWSYDQSY YL + SPS+H TP+S R +G+ ++ ++ R+
Sbjct: 281 GQSQITDPRQAQSSPPWSYDQSYPSYLSQMTSPSIHSTTPLSSTRGTGLPAIT-DVPRRI 339
Query: 322 STAPDLTAFSDPRQFPALPSI-----SDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATR 376
S A +L FSDPRQFP++ S+ S+PRMHYP FTY+P PVTSG+ +GMSA T
Sbjct: 340 SGASELGPFSDPRQFPSISSLTESRFSNPRMHYPATFTYTP-PVTSGMSLGMSA---TTH 395
Query: 377 YHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-GGERSPPRILPPCTNA 435
YHTYLPPPYPGSSQ+Q GPFQ SS Y LYYG S+GSYQF MV GG+RSP R+LPPCT
Sbjct: 396 YHTYLPPPYPGSSQSQSGPFQTSSTPY-LYYGTSSGSYQFPMVPGGDRSPSRMLPPCTTT 454
Query: 436 STGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480
S GS LLNP+LPNQ+D V+A+GSHS+SPT + S R++E+VWRPY
Sbjct: 455 SNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSGRMDESVWRPY 499
>gi|226442783 runt-related transcription factor 2 isoform a [Homo
sapiens]
Length = 521
Score = 566 bits (1459), Expect = e-161
Identities = 314/547 (57%), Positives = 373/547 (68%), Gaps = 93/547 (17%)
Query: 1 MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTALSPGKMSEALPL-- 58
MAS+S+F + Q F D STSRRF+PPS++L PGKMS+ P+
Sbjct: 1 MASNSLFSTVTPCQQNFF-------------WDPSTSRRFSPPSSSLQPGKMSDVSPVVA 47
Query: 59 ---------------------------------GAPDAGAALAGKLRS--GDRSMVEVLA 83
A A AA +LR +R+MVE++A
Sbjct: 48 AQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIA 107
Query: 84 DHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAE 143
DHP ELVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALG+VPDGT+VTVMAGNDENYSAE
Sbjct: 108 DHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAE 167
Query: 144 LRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREP 203
LRNA+A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK+TVDGPREP
Sbjct: 168 LRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREP 227
Query: 204 RRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHS-TAFNPQ 262
RRHRQKLDD +KP FS+RLS+L ++ +MRV P NPR SLN + + FNPQ
Sbjct: 228 RRHRQKLDD-SKPS--LFSDRLSDLGRIPHPSMRVG----VPPQNPRPSLNSAPSPFNPQ 280
Query: 263 PQSQMQDTRQIQPSPPWSYDQSY-QYLGSIASPSVHPATPISPGRASGMTTLSAELSSRL 321
QSQ+ D RQ Q SPPWSYDQSY YL + SPS+H TP+S R +G+ ++ ++ R+
Sbjct: 281 GQSQITDPRQAQSSPPWSYDQSYPSYLSQMTSPSIHSTTPLSSTRGTGLPAIT-DVPRRI 339
Query: 322 ST----------------------APDLTAFSDPRQFPALPSI-----SDPRMHYPGAFT 354
S A +L FSDPRQFP++ S+ S+PRMHYP FT
Sbjct: 340 SDDDTATSDFCLWPSTLSKKSQAGASELGPFSDPRQFPSISSLTESRFSNPRMHYPATFT 399
Query: 355 YSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSY 414
Y+P PVTSG+ +GMSA T YHTYLPPPYPGSSQ+Q GPFQ SS Y LYYG S+GSY
Sbjct: 400 YTP-PVTSGMSLGMSA---TTHYHTYLPPPYPGSSQSQSGPFQTSSTPY-LYYGTSSGSY 454
Query: 415 QFSMV-GGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLE 473
QF MV GG+RSP R+LPPCT S GS LLNP+LPNQ+D V+A+GSHS+SPT + S R++
Sbjct: 455 QFPMVPGGDRSPSRMLPPCTTTSNGSTLLNPNLPNQNDGVDADGSHSSSPTVLNSSGRMD 514
Query: 474 EAVWRPY 480
E+VWRPY
Sbjct: 515 ESVWRPY 521
>gi|66934969 runt-related transcription factor 2 isoform c [Homo
sapiens]
Length = 507
Score = 565 bits (1456), Expect = e-161
Identities = 307/515 (59%), Positives = 363/515 (70%), Gaps = 80/515 (15%)
Query: 33 DASTSRRFTPPSTALSPGKMSEALPL---------------------------------- 58
D STSRRF+PPS++L PGKMS+ P+
Sbjct: 6 DPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAA 65
Query: 59 -GAPDAGAALAGKLRS--GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIA 115
A A AA +LR +R+MVE++ADHP ELVRTDSPNFLCSVLP+HWRCNKTLP+A
Sbjct: 66 AAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVA 125
Query: 116 FKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTL 175
FKVVALG+VPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRGKSFTL
Sbjct: 126 FKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTL 185
Query: 176 TITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTA 235
TITVFTNPPQVATYHRAIK+TVDGPREPRRHRQKLDD +KP FS+RLS+L ++ +
Sbjct: 186 TITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLDD-SKPS--LFSDRLSDLGRIPHPS 242
Query: 236 MRVSPHHPAPTPNPRASLNHS-TAFNPQPQSQMQDTRQIQPSPPWSYDQSY-QYLGSIAS 293
MRV P NPR SLN + + FNPQ QSQ+ D RQ Q SPPWSYDQSY YL + S
Sbjct: 243 MRVG----VPPQNPRPSLNSAPSPFNPQGQSQITDPRQAQSSPPWSYDQSYPSYLSQMTS 298
Query: 294 PSVHPATPISPGRASGMTTLSAELSSRLST----------------------APDLTAFS 331
PS+H TP+S R +G+ ++ ++ R+S A +L FS
Sbjct: 299 PSIHSTTPLSSTRGTGLPAIT-DVPRRISDDDTATSDFCLWPSTLSKKSQAGASELGPFS 357
Query: 332 DPRQFPALPSI-----SDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYP 386
DPRQFP++ S+ S+PRMHYP FTY+P PVTSG+ +GMSA T YHTYLPPPYP
Sbjct: 358 DPRQFPSISSLTESRFSNPRMHYPATFTYTP-PVTSGMSLGMSA---TTHYHTYLPPPYP 413
Query: 387 GSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-GGERSPPRILPPCTNASTGSALLNPS 445
GSSQ+Q GPFQ SS Y LYYG S+GSYQF MV GG+RSP R+LPPCT S GS LLNP+
Sbjct: 414 GSSQSQSGPFQTSSTPY-LYYGTSSGSYQFPMVPGGDRSPSRMLPPCTTTSNGSTLLNPN 472
Query: 446 LPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480
LPNQ+D V+A+GSHS+SPT + S R++E+VWRPY
Sbjct: 473 LPNQNDGVDADGSHSSSPTVLNSSGRMDESVWRPY 507
>gi|72534652 runt-related transcription factor 3 isoform 1 [Homo
sapiens]
Length = 429
Score = 492 bits (1266), Expect = e-139
Identities = 282/499 (56%), Positives = 332/499 (66%), Gaps = 89/499 (17%)
Query: 1 MASDSIFESFPSYPQCFMRECILGMNPSRDVHDASTSRRFTPPSTAL----SPGKMSEAL 56
MAS+SIF+SFP+Y F+R D STSRRFTPPS A GKM E
Sbjct: 1 MASNSIFDSFPTYSPTFIR-------------DPSTSRRFTPPSPAFPCGGGGGKMGENS 47
Query: 57 PLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAF 116
+ A G+ R RSMV+VLADH GELVRTDSPNFLCSVLP+HWRCNKTLP+AF
Sbjct: 48 GALSAQAAVGPGGRARPEVRSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAF 107
Query: 117 KVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLT 176
KVVALGDVPDGT+VTVMAGNDENYSAELRNA+A MKNQVARFNDLRFVGRSGRGKSFTLT
Sbjct: 108 KVVALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLT 167
Query: 177 ITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAM 236
ITVFTNP QVATYHRAIK+TVDGPREPRRHRQKL+DQTKP F +R +LE+LR M
Sbjct: 168 ITVFTNPTQVATYHRAIKVTVDGPREPRRHRQKLEDQTKP----FPDRFGDLERLR---M 220
Query: 237 RVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQP-SPPWSYDQSYQYLGSIASPS 295
RV+P TP+PR SL+ ++ F+ QPQ+ +Q T ++ P S P +D+S+
Sbjct: 221 RVTP----STPSPRGSLSTTSHFSSQPQTPIQGTSELNPFSDPRQFDRSF---------- 266
Query: 296 VHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPG---- 351
T P LT +FP DPRMHYPG
Sbjct: 267 --------------------------PTLPTLT----ESRFP------DPRMHYPGAMSA 290
Query: 352 AFTYSPTPV-TSGIGIGMSAMGSATRY-HTYLPPPYPGSSQAQGGPFQASSPSYHLYYGA 409
AF YS TP TS + ++ M + +R+ HTYLPPPYPG+ Q Q GPFQA+ YHLYYG
Sbjct: 291 AFPYSATPSGTSISSLSVAGMPATSRFHHTYLPPPYPGAPQNQSGPFQANPSPYHLYYGT 350
Query: 410 SAGSYQFSMV-----GGERSPPRILPPCTNASTGSA---LLNPSLPNQSDVVEAEGSHSN 461
S+GSYQFSMV GG+RSP R+L CT+++ A L+NPSL QSD VEA+GSHSN
Sbjct: 351 SSGSYQFSMVAGSSSGGDRSPTRMLASCTSSAASVAAGNLMNPSLGGQSDGVEADGSHSN 410
Query: 462 SPTNMAPSARLEEAVWRPY 480
SPT ++ R++EAVWRPY
Sbjct: 411 SPTALSTPGRMDEAVWRPY 429
>gi|169790837 runt-related transcription factor 1 isoform AML1a
[Homo sapiens]
Length = 250
Score = 479 bits (1232), Expect = e-135
Identities = 238/247 (96%), Positives = 241/247 (97%), Gaps = 4/247 (1%)
Query: 33 DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 92
DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT
Sbjct: 6 DASTSRRFTPPSTALSPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRT 65
Query: 93 DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 152
DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK
Sbjct: 66 DSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMK 125
Query: 153 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 212
NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD
Sbjct: 126 NQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDD 185
Query: 213 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ 272
QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQ+
Sbjct: 186 QTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQE--- 242
Query: 273 IQPSPPW 279
+ + PW
Sbjct: 243 -EDTAPW 248
>gi|4757918 runt-related transcription factor 3 isoform 2 [Homo
sapiens]
Length = 415
Score = 476 bits (1226), Expect = e-134
Identities = 270/467 (57%), Positives = 316/467 (67%), Gaps = 76/467 (16%)
Query: 33 DASTSRRFTPPSTAL----SPGKMSEALPLGAPDAGAALAGKLRSGDRSMVEVLADHPGE 88
D STSRRFTPPS A GKM E + A G+ R RSMV+VLADH GE
Sbjct: 6 DPSTSRRFTPPSPAFPCGGGGGKMGENSGALSAQAAVGPGGRARPEVRSMVDVLADHAGE 65
Query: 89 LVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNAT 148
LVRTDSPNFLCSVLP+HWRCNKTLP+AFKVVALGDVPDGT+VTVMAGNDENYSAELRNA+
Sbjct: 66 LVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNAS 125
Query: 149 AAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQ 208
A MKNQVARFNDLRFVGRSGRGKSFTLTITVFTNP QVATYHRAIK+TVDGPREPRRHRQ
Sbjct: 126 AVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREPRRHRQ 185
Query: 209 KLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQ 268
KL+DQTKP F +R +LE+LR MRV+P TP+PR SL+ ++ F+ QPQ+ +Q
Sbjct: 186 KLEDQTKP----FPDRFGDLERLR---MRVTP----STPSPRGSLSTTSHFSSQPQTPIQ 234
Query: 269 DTRQIQP-SPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDL 327
T ++ P S P +D+S+ T P L
Sbjct: 235 GTSELNPFSDPRQFDRSF------------------------------------PTLPTL 258
Query: 328 TAFSDPRQFPALPSISDPRMHYPG----AFTYSPTPV-TSGIGIGMSAMGSATRY-HTYL 381
T +FP DPRMHYPG AF YS TP TS + ++ M + +R+ HTYL
Sbjct: 259 T----ESRFP------DPRMHYPGAMSAAFPYSATPSGTSISSLSVAGMPATSRFHHTYL 308
Query: 382 PPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMV-----GGERSPPRILPPCTNAS 436
PPPYPG+ Q Q GPFQA+ YHLYYG S+GSYQFSMV GG+RSP R+L CT+++
Sbjct: 309 PPPYPGAPQNQSGPFQANPSPYHLYYGTSSGSYQFSMVAGSSSGGDRSPTRMLASCTSSA 368
Query: 437 TGSA---LLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVWRPY 480
A L+NPSL QSD VEA+GSHSNSPT ++ R++EAVWRPY
Sbjct: 369 ASVAAGNLMNPSLGGQSDGVEADGSHSNSPTALSTPGRMDEAVWRPY 415
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 50.4 bits (119), Expect = 3e-06
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 37/227 (16%)
Query: 240 PHHPAPTPNPRASLNHSTAFNPQPQSQM-QDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
P PAP+ +L+ A+ PQPQSQ Q T Q P + S GS AS
Sbjct: 565 PQQPAPS-----TLSQQAAY-PQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQAS----- 613
Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPT 358
+ P G ++ L SR S+ PDL+ SI D M GA SP
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSG-----------SIDDLPMGTEGAL--SPG 660
Query: 359 PVTSGIGI--GMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQF 416
TSGI G + + + + + P PG GP + S + +G
Sbjct: 661 VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIR----GPSPSPVGSPASVAQSRSGPLSP 716
Query: 417 SMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSP 463
+ V G + PPR PP + ++++PS+ NQS + + G +P
Sbjct: 717 AAVPGNQMPPR--PP---SGQSDSIMHPSM-NQSSIAQDRGYMQRNP 757
Score = 30.4 bits (67), Expect = 3.7
Identities = 48/202 (23%), Positives = 70/202 (34%), Gaps = 20/202 (9%)
Query: 259 FNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELS 318
F+P + R PSP S Q SP+ P + P SG + S
Sbjct: 681 FSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPS 740
Query: 319 SRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYH 378
S+ + ++ P +P S P+ PG+ P I G MGS +
Sbjct: 741 MNQSSIAQDRGYM--QRNPQMPQYSSPQ---PGSALSPRQPSGGQIHTG---MGSYQQNS 792
Query: 379 TYLPPPYPGSSQAQGG----PFQASSPSYHLYYGASAGSYQFSMVGGER------SPPRI 428
P G QGG P + P+ + AG GG+ P
Sbjct: 793 MGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGT 852
Query: 429 LPP--CTNASTGSALLNPSLPN 448
LPP ++AS G+ P++ N
Sbjct: 853 LPPGRMSHASMGNRPYGPNMAN 874
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 50.4 bits (119), Expect = 3e-06
Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 37/227 (16%)
Query: 240 PHHPAPTPNPRASLNHSTAFNPQPQSQM-QDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
P PAP+ +L+ A+ PQPQSQ Q T Q P + S GS AS
Sbjct: 565 PQQPAPS-----TLSQQAAY-PQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQAS----- 613
Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPT 358
+ P G ++ L SR S+ PDL+ SI D M GA SP
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSG-----------SIDDLPMGTEGAL--SPG 660
Query: 359 PVTSGIGI--GMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQF 416
TSGI G + + + + + P PG GP + S + +G
Sbjct: 661 VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIR----GPSPSPVGSPASVAQSRSGPLSP 716
Query: 417 SMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSP 463
+ V G + PPR PP + ++++PS+ NQS + + G +P
Sbjct: 717 AAVPGNQMPPR--PP---SGQSDSIMHPSM-NQSSIAQDRGYMQRNP 757
Score = 30.4 bits (67), Expect = 3.7
Identities = 48/202 (23%), Positives = 70/202 (34%), Gaps = 20/202 (9%)
Query: 259 FNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELS 318
F+P + R PSP S Q SP+ P + P SG + S
Sbjct: 681 FSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPS 740
Query: 319 SRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYH 378
S+ + ++ P +P S P+ PG+ P I G MGS +
Sbjct: 741 MNQSSIAQDRGYM--QRNPQMPQYSSPQ---PGSALSPRQPSGGQIHTG---MGSYQQNS 792
Query: 379 TYLPPPYPGSSQAQGG----PFQASSPSYHLYYGASAGSYQFSMVGGER------SPPRI 428
P G QGG P + P+ + AG GG+ P
Sbjct: 793 MGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYGT 852
Query: 429 LPP--CTNASTGSALLNPSLPN 448
LPP ++AS G+ P++ N
Sbjct: 853 LPPGRMSHASMGNRPYGPNMAN 874
>gi|28558973 mediator complex subunit 14 [Homo sapiens]
Length = 1454
Score = 46.2 bits (108), Expect = 7e-05
Identities = 57/236 (24%), Positives = 84/236 (35%), Gaps = 24/236 (10%)
Query: 245 PTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISP 304
P P + LN N + + + PSP D + + P P P
Sbjct: 955 PAPGLKTFLNMFVDSNQDARRRSVNEDDNPPSPIGG-DMMDSLISQLQPPPQQQPFPKQP 1013
Query: 305 GRASG--MTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDP-RMHYPGAFTYSPTPVT 361
G + +T+ S ++ +P + P A S S R P +F +P P +
Sbjct: 1014 GTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSS 1073
Query: 362 SGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGG 421
GI IG A S H L P P+ SPS AG++ S
Sbjct: 1074 HGISIGPGA--SFASPHGTLDP---------SSPYTMVSPS------GRAGNWPGSPQVS 1116
Query: 422 ERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPSARLEEAVW 477
SP +P + A+ L+ +P+ S A S PTNM P +L + W
Sbjct: 1117 GPSPAARMPGMSPANPS---LHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQRSW 1169
>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
Length = 667
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 227 ELEQLRRTAMRVSPHHP------APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPS 276
+ +Q+ RT + ++ P AP P PR + S A Q + QPS
Sbjct: 463 QAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS 522
Query: 277 PPWSYDQSYQYLGSIASPSVHPATPISPGR-ASGMTTLS------------AELSSRLST 323
PP + + S ++PS +S SG TT S +L S +T
Sbjct: 523 PPPT--KFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATT 580
Query: 324 APDLTAFSDPRQFPALPSIS-DPRMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYH 378
AP TA S P +S P G T P+PV +S + SA+ +
Sbjct: 581 APPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEA 640
Query: 379 TYLPPPYPGSSQAQGGPFQASSP 401
PPP PG+ +A G + SP
Sbjct: 641 GDSPPPAPGTPKANGSQPNSGSP 663
>gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 227 ELEQLRRTAMRVSPHHP------APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPS 276
+ +Q+ RT + ++ P AP P PR + S A Q + QPS
Sbjct: 473 QAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS 532
Query: 277 PPWSYDQSYQYLGSIASPSVHPATPISPGR-ASGMTTLS------------AELSSRLST 323
PP + + S ++PS +S SG TT S +L S +T
Sbjct: 533 PPPT--KFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATT 590
Query: 324 APDLTAFSDPRQFPALPSIS-DPRMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYH 378
AP TA S P +S P G T P+PV +S + SA+ +
Sbjct: 591 APPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEA 650
Query: 379 TYLPPPYPGSSQAQGGPFQASSP 401
PPP PG+ +A G + SP
Sbjct: 651 GDSPPPAPGTPKANGSQPNSGSP 673
>gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/203 (26%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 227 ELEQLRRTAMRVSPHHP------APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPS 276
+ +Q+ RT + ++ P AP P PR + S A Q + QPS
Sbjct: 473 QAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPS 532
Query: 277 PPWSYDQSYQYLGSIASPSVHPATPISPGR-ASGMTTLS------------AELSSRLST 323
PP + + S ++PS +S SG TT S +L S +T
Sbjct: 533 PPPT--KFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATT 590
Query: 324 APDLTAFSDPRQFPALPSIS-DPRMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYH 378
AP TA S P +S P G T P+PV +S + SA+ +
Sbjct: 591 APPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEA 650
Query: 379 TYLPPPYPGSSQAQGGPFQASSP 401
PPP PG+ +A G + SP
Sbjct: 651 GDSPPPAPGTPKANGSQPNSGSP 673
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 40.8 bits (94), Expect = 0.003
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 216 PGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFN-PQPQSQMQDTRQIQ 274
P S +E L+Q ++ PAP+P+P P P + Q+
Sbjct: 698 PSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGGDDKPQVPPRVPIPPRPTRPHVQLS 757
Query: 275 PSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTL----SAELSSRLSTAPDLTAF 330
P+PP +++ Q+ G + P V P P+SP + + L S+ L RLS++P T
Sbjct: 758 PAPP-GEEETSQWPGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLPPRLSSSPGKT-M 815
Query: 331 SDPRQFPALPSISDPRM 347
+ F + P + P++
Sbjct: 816 PTTQSFASDPKYATPQV 832
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
sapiens]
Length = 1086
Score = 40.8 bits (94), Expect = 0.003
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 216 PGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFN-PQPQSQMQDTRQIQ 274
P S +E L+Q ++ PAP+P+P P P + Q+
Sbjct: 776 PSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGGDDKPQVPPRVPIPPRPTRPHVQLS 835
Query: 275 PSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGMTTL----SAELSSRLSTAPDLTAF 330
P+PP +++ Q+ G + P V P P+SP + + L S+ L RLS++P T
Sbjct: 836 PAPP-GEEETSQWPGPASPPRVPPREPLSPQGSRTPSPLVPPGSSPLPPRLSSSPGKT-M 893
Query: 331 SDPRQFPALPSISDPRM 347
+ F + P + P++
Sbjct: 894 PTTQSFASDPKYATPQV 910
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 40.8 bits (94), Expect = 0.003
Identities = 62/239 (25%), Positives = 84/239 (35%), Gaps = 32/239 (13%)
Query: 235 AMRVSPHHPAPTPNPRASLNHSTAFN---PQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI 291
++R P PA P P + +++S A P S + Q S P S+ Q G
Sbjct: 538 SLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ--GPQ 595
Query: 292 ASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPG 351
+P P P +TT SA LS+ ++T A P P R PG
Sbjct: 596 GAPYPFPPVPT-------VTTSSATLSTVIATVASSPAGYKTASPPGPPPYGK-RAPSPG 647
Query: 352 AFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQG-GPFQASSPSYHLYYGAS 410
A+ + P GS + T PP Y G+S G G F+ SP +
Sbjct: 648 AYKTATPPGYKP--------GSPPSFRTGTPPGYRGTSPPAGPGTFKPGSP--------T 691
Query: 411 AGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPS 469
G G P LPP A L+ + Q E E S P +PS
Sbjct: 692 VGPGPLPPAGPSGLPS--LPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 748
Score = 34.3 bits (77), Expect = 0.26
Identities = 58/230 (25%), Positives = 83/230 (36%), Gaps = 36/230 (15%)
Query: 235 AMRVSPHHPAPTPNPRA-SLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIAS 293
A + P +P P P + S+++ QP Q P PP Y + +A+
Sbjct: 401 ASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRL------LAN 454
Query: 294 PSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY---- 349
+ HP P P + T +ST +Q + H+
Sbjct: 455 SNAHPG-PFPPSTGAQSTA-----HPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG 508
Query: 350 ---PGAFTYSPTPVTSGIG-----IGMS-AMGSATRYH---TYLPPPYPGSSQAQGGP-F 396
PGAF P P+ G MS ++GS Y +LPPP+ S +Q GP
Sbjct: 509 PPPPGAF---PHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNG 565
Query: 397 QASSPSYHLYYGASAGSYQFSMVGGERSP---PRILPPCTNASTGSALLN 443
S S + S GSY S + P P PP +T SA L+
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 40.8 bits (94), Expect = 0.003
Identities = 62/239 (25%), Positives = 84/239 (35%), Gaps = 32/239 (13%)
Query: 235 AMRVSPHHPAPTPNPRASLNHSTAFN---PQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI 291
++R P PA P P + +++S A P S + Q S P S+ Q G
Sbjct: 538 SLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ--GPQ 595
Query: 292 ASPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPG 351
+P P P +TT SA LS+ ++T A P P R PG
Sbjct: 596 GAPYPFPPVPT-------VTTSSATLSTVIATVASSPAGYKTASPPGPPPYGK-RAPSPG 647
Query: 352 AFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQG-GPFQASSPSYHLYYGAS 410
A+ + P GS + T PP Y G+S G G F+ SP +
Sbjct: 648 AYKTATPPGYKP--------GSPPSFRTGTPPGYRGTSPPAGPGTFKPGSP--------T 691
Query: 411 AGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPS 469
G G P LPP A L+ + Q E E S P +PS
Sbjct: 692 VGPGPLPPAGPSGLPS--LPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 748
Score = 34.3 bits (77), Expect = 0.26
Identities = 58/230 (25%), Positives = 83/230 (36%), Gaps = 36/230 (15%)
Query: 235 AMRVSPHHPAPTPNPRA-SLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIAS 293
A + P +P P P + S+++ QP Q P PP Y + +A+
Sbjct: 401 ASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRL------LAN 454
Query: 294 PSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY---- 349
+ HP P P + T +ST +Q + H+
Sbjct: 455 SNAHPG-PFPPSTGAQSTA-----HPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG 508
Query: 350 ---PGAFTYSPTPVTSGIG-----IGMS-AMGSATRYH---TYLPPPYPGSSQAQGGP-F 396
PGAF P P+ G MS ++GS Y +LPPP+ S +Q GP
Sbjct: 509 PPPPGAF---PHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNG 565
Query: 397 QASSPSYHLYYGASAGSYQFSMVGGERSP---PRILPPCTNASTGSALLN 443
S S + S GSY S + P P PP +T SA L+
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLS 615
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 40.4 bits (93), Expect = 0.004
Identities = 55/222 (24%), Positives = 82/222 (36%), Gaps = 25/222 (11%)
Query: 234 TAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIAS 293
T+ SP P+ +P + S +++P S + P+ P S Y S S
Sbjct: 1632 TSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTS 1689
Query: 294 PSVHPATP----ISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY 349
PS P +P SP + + S S T+P + S P P PS S +Y
Sbjct: 1690 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPNY 1748
Query: 350 -PGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYG 408
P + Y+PT S ++ Y P P S + +SPSY
Sbjct: 1749 SPTSPNYTPT--------SPSYSPTSPSYSPTSPNYTPTSPN-----YSPTSPSY----S 1791
Query: 409 ASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQS 450
++ SY + S PR P + S +PS P+ S
Sbjct: 1792 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYS 1833
Score = 38.5 bits (88), Expect = 0.014
Identities = 52/193 (26%), Positives = 74/193 (38%), Gaps = 22/193 (11%)
Query: 234 TAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI-- 291
T+ SP P TP S +++P S + PS P QS Y S
Sbjct: 1765 TSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPS 1824
Query: 292 ---ASPSVHPA----TPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISD 344
+SPS P TP SP + + T+P + S P+ P P+ S
Sbjct: 1825 YSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTS-PKYSPTSPTYSP 1883
Query: 345 PRMHY-PGAFTYSPT-PVTSGIGIGMSAMG-----SATRYH----TYLPPPYPGSSQAQG 393
Y P + TYSPT PV + S ++ +Y TY P GS+ +
Sbjct: 1884 TTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPT 1943
Query: 394 GP-FQASSPSYHL 405
P + +SP+Y L
Sbjct: 1944 SPGYSPTSPTYSL 1956
Score = 31.2 bits (69), Expect = 2.2
Identities = 49/185 (26%), Positives = 66/185 (35%), Gaps = 36/185 (19%)
Query: 293 SPSVHP----ATPI----SPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISD 344
SP++ P ATP SP SGMT +A S S A D + FS P PA
Sbjct: 1514 SPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSP--SAASDASGFS-PGYSPA------ 1564
Query: 345 PRMHYPGAFTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYH 404
+SPTP + GS Y+P P S + A P
Sbjct: 1565 ----------WSPTP---------GSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSP 1605
Query: 405 LYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPT 464
Y + SY + + P P N S S +P+ P+ S + S S +
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665
Query: 465 NMAPS 469
+PS
Sbjct: 1666 PTSPS 1670
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 38.9 bits (89), Expect = 0.010
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 26/164 (15%)
Query: 235 AMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ--IQPSPPWSYDQSYQYLGSIA 292
A RV + AP P P ++ + P Q Q Q T+Q + S P Q+Y
Sbjct: 888 ASRVGFQNIAPKPLPSQQVSSTVVQQPIQQPQ-QPTQQSVVIVSQPAQQGQTY------- 939
Query: 293 SPSVHPATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGA 352
+P++H +P L A + +L+ P++T S P PA + P A
Sbjct: 940 APAIHQIVLANPA------ALPAGQTVQLTGQPNITPSSSPSPVPATNN------QVPTA 987
Query: 353 FTYSPTPVTSGIGIGMSAMGSATR----YHTYLPPPYPGSSQAQ 392
+ S TP + G +S M S R H+ PPP Q Q
Sbjct: 988 MSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQQVQVQVQ 1031
>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
Length = 824
Score = 38.5 bits (88), Expect = 0.014
Identities = 38/118 (32%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 224 RLSELEQL--RRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSY 281
R S+L Q R + VSP A P SLN +T P S QD Q QPSP +S+
Sbjct: 615 RSSQLMQSSGRSGSSLVSPFSSATAALP-PSLNLTT-----PASTSQDASQCQPSPDFSH 668
Query: 282 DQSYQYLGSIASPSVHPATPISPGRASGMTTLSAELSSR-LSTAPDLTAFSDPRQFPA 338
D+ + L S P P+ PG + R + A T F +P PA
Sbjct: 669 DRQLRLLLS------QPIQPMMPGSCDARQPSEVSRTGRQVKYAQSQTVFQNPDAHPA 720
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 38.5 bits (88), Expect = 0.014
Identities = 48/191 (25%), Positives = 59/191 (30%), Gaps = 16/191 (8%)
Query: 240 PHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASP--SVH 297
P P P P P QP Q +Q P P + Q +Q P S
Sbjct: 56 PKPPIPPPPPHQQ-------QQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSK 108
Query: 298 PATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSP 357
P PG A G+ + SS P T+ + P P P + P
Sbjct: 109 PVVAQGPGPAPGVGSAPPASSSAPPATPP-TSGAPPGSGPGPTPTPPPAVTSAPPGAPPP 167
Query: 358 TPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQ--AQGGPFQASSPSYHLYYGASAGSYQ 415
TP +SG+ G +P P PG Q GGP P G
Sbjct: 168 TPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPG----GPKPGGGPG 223
Query: 416 FSMVGGERSPP 426
S GG PP
Sbjct: 224 LSTPGGHPKPP 234
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 38.1 bits (87), Expect = 0.018
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 243 PAPTPNPRASLNHSTA----FNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
P PT P ++ +T P P + PSPP + + + + P+ P
Sbjct: 1448 PPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTP 1507
Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPT 358
TP + TT + ++ +T P T S P P P S + P T SP
Sbjct: 1508 ITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTL--PPTTTPSPP 1565
Query: 359 PVTS 362
P T+
Sbjct: 1566 PTTT 1569
Score = 34.3 bits (77), Expect = 0.26
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 245 PTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSI-----ASPSVHPA 299
PT A + T NP P+S T + SP +S L ++ + + P+
Sbjct: 4198 PTHTSTAPIAELTTSNPPPESSTPQTSRSTSSP---LTESTTLLSTLPPAIEMTSTAPPS 4254
Query: 300 TPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTP 359
TP +P SG TLS S+ S P + P+ S + A+T +PTP
Sbjct: 4255 TPTAPTTTSGGHTLSPPPSTTTS-PPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTP 4313
Query: 360 VTS 362
+++
Sbjct: 4314 LST 4316
Score = 31.2 bits (69), Expect = 2.2
Identities = 51/229 (22%), Positives = 75/229 (32%), Gaps = 17/229 (7%)
Query: 243 PAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPI 302
P P +L +T +P P + PSPP + S + + P P T
Sbjct: 1546 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPP---PTTTP 1602
Query: 303 SPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTS 362
SP TT + + + P T + P LP + P P T +P P T+
Sbjct: 1603 SP----PTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSP--PPTTTTTPPPTTT 1656
Query: 363 GIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGE 422
+ T PP SS P SP S + S +
Sbjct: 1657 PSPPTTTTPSPPITTTTTPPPTTTPSSPITTTP----SPPTTTMTTPSPTTTPSSPITTT 1712
Query: 423 RSPPRIL---PPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAP 468
+P PP T +T S PS P + + + ++SP P
Sbjct: 1713 TTPSSTTTPSPPPTTMTTPSPTTTPS-PPTTTMTTLPPTTTSSPLTTTP 1760
Score = 30.8 bits (68), Expect = 2.8
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 246 TPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPG 305
TP+P +T +P P S PSPP + + P+ P+ PI+
Sbjct: 1398 TPSPP-----TTTPSPPPTSTTTLPPTTTPSPPTTTTTT-------PPPTTTPSPPITTT 1445
Query: 306 RASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTS 362
TT + S +T P T S P P+ P+ + P T +P P T+
Sbjct: 1446 TTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSP---PTTTTTTPPPTTT 1499
Score = 30.8 bits (68), Expect = 2.8
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 21/133 (15%)
Query: 243 PAPTPNPRASLNHS----TAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
P TP+P + S T P P + PSPP + + + +SP
Sbjct: 1653 PTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTT 1712
Query: 299 ATPISPGRAS---------GMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHY 349
TP S S TT + ++ ++T P T S P PSI+ P
Sbjct: 1713 TTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPP---- 1768
Query: 350 PGAFTYSPTPVTS 362
T+SP T+
Sbjct: 1769 ----TFSPFSTTT 1777
Score = 29.3 bits (64), Expect = 8.3
Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 243 PAPTPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPI 302
P+P P +L +T +P + PSPP + + P+ P+ PI
Sbjct: 1406 PSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPIT-------TTTTPPPTTTPSPPI 1458
Query: 303 SPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALP---SISDPRMHYPGAFTYSP-T 358
S TT + +P T S P P+ P + + P P T +P T
Sbjct: 1459 STTTTPPPTT---------TPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPIT 1509
Query: 359 PVTSGIGIGMSAMGSATRYHTYLPPP 384
P S + + S T PPP
Sbjct: 1510 PPASTTTLPPTTTPSPPTTTTTTPPP 1535
Score = 29.3 bits (64), Expect = 8.3
Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 2/124 (1%)
Query: 240 PHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQ--IQPSPPWSYDQSYQYLGSIASPSVH 297
P TP P + + T P P + T PSPP + + + + P+
Sbjct: 1565 PPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTT 1624
Query: 298 PATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSP 357
P TP + TT + + +T P T S P P I+ P SP
Sbjct: 1625 PITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSP 1684
Query: 358 TPVT 361
T
Sbjct: 1685 ITTT 1688
>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
Length = 669
Score = 38.1 bits (87), Expect = 0.018
Identities = 48/169 (28%), Positives = 67/169 (39%), Gaps = 22/169 (13%)
Query: 249 PRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRAS 308
P ASL + QP + + + QPS Y G +ASPS A S G
Sbjct: 253 PSASLG--VGYRTQPMTAQAASYRAQPS----VSLGAPYRGQLASPSSQSAAASSLGPYG 306
Query: 309 GMTTLSAELSS---RLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIG 365
G ++ LSS + + A L ++ Q +L S + Y GA S G
Sbjct: 307 GAQPSASALSSYGGQAAAASSLNSYG--AQGSSLASYGNQPSSY-GA------QAASSYG 357
Query: 366 IGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSY 414
+ +A+ Y+T GS AQ + A S + L YGA A SY
Sbjct: 358 V----RAAASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASY 402
>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
Length = 667
Score = 37.4 bits (85), Expect = 0.030
Identities = 50/180 (27%), Positives = 68/180 (37%), Gaps = 24/180 (13%)
Query: 244 APTPNPRA----SLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPA 299
AP P PR + S A Q + QPSPP + + S ++PS
Sbjct: 486 APQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPT--KFIVMSSSSSAPSTQQV 543
Query: 300 TPISPGR-ASGMTTLS------------AELSSRLSTAPDLTAFSDPRQFPALPSIS-DP 345
+S SG TT S +L S +TAP TA S P +S P
Sbjct: 544 LSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPP 603
Query: 346 RMHYPGAFTYSPTPV----TSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSP 401
G T P+PV +S + SA+ + PPP PG+ +A G + SP
Sbjct: 604 TGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSP 663
>gi|32171215 CREB regulated transcription coactivator 2 [Homo
sapiens]
Length = 693
Score = 37.4 bits (85), Expect = 0.030
Identities = 62/260 (23%), Positives = 94/260 (36%), Gaps = 65/260 (25%)
Query: 241 HHPAPTPNPRASLNHST--AFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHP 298
H P P+ ++SL++ A PQ Q+Q + P S + S+ PS+
Sbjct: 335 HSPLSHPSLQSSLSNPNLQASLSSPQPQLQGSHSHPSLPASSLARHVLPTTSLGHPSL-- 392
Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTAFSDPRQFPALPS--ISDP------RMHYP 350
+ P +S +T S L + A A R+ P P ++ P + P
Sbjct: 393 SAPALSSSSSSSSTSSPVLGAPSYPASTPGASPHHRRVPLSPLSLLAGPADARRSQQQLP 452
Query: 351 GAF--TYSPT--PVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLY 406
F T SPT +T G+ + S + + R PPYP SS
Sbjct: 453 KQFSPTMSPTLSSITQGVPLDTSKLSTDQRL-----PPYPYSS----------------- 490
Query: 407 YGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEG-------SH 459
P +LP T T +L P LP+QS V++ G SH
Sbjct: 491 ------------------PSLVLP--TQPHTPKSLQQPGLPSQSCSVQSSGGQPPGRQSH 530
Query: 460 SNSPTNMAPSARLEEAVWRP 479
+P PS +++ RP
Sbjct: 531 YGTPYPPGPSGHGQQSYHRP 550
>gi|45827755 transforming, acidic coiled-coil containing protein 2
isoform b [Homo sapiens]
Length = 1094
Score = 37.4 bits (85), Expect = 0.030
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 29/187 (15%)
Query: 246 TPNPRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPI--- 302
T + + +L+ T + QP Q+ ++ Q P S D +A + PA P
Sbjct: 7 TSDNQRTLSAQTPRSAQPPGNSQNIKRKQQDTPGSPDHRDASSSPVADDIIQPAAPADLE 66
Query: 303 SPGRASG----------MTTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGA 352
SP A+ T L A+ SS A + + P + P P P +
Sbjct: 67 SPTLAASSYHGDVVGQVSTDLIAQRSSDSEEAFETPESTTPVKAPPAPPPPPPEVIPEPE 126
Query: 353 FTYSPTPVTSGIGIGMSAMGSATRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYG---- 408
+ P P G G T P P S +G PF+ S S+ +
Sbjct: 127 VSTQPPPEEPGCG-----------SETVPVPDGPRSDSVEGSPFRPPSHSFSAVFDEDKP 175
Query: 409 -ASAGSY 414
AS+G+Y
Sbjct: 176 IASSGTY 182
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 37.0 bits (84), Expect = 0.040
Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 19/115 (16%)
Query: 314 SAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMGS 373
S R +T+ +L S R ALP YPGA SG+G +A +
Sbjct: 464 SGPCDKRFATSEEL--LSHLRTHTALPGAEKLLAAYPGA---------SGLGSAAAAAAA 512
Query: 374 ATRYHTYLPPP-YPGS--SQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGERSP 425
A H +LPPP PGS S + P YH Y G S GG P
Sbjct: 513 AASCHLHLPPPAAPGSPGSLSLRNPHTLGLSRYHPY-----GKSHLSTAGGLAVP 562
>gi|193083129 MAP/microtubule affinity-regulating kinase 3 isoform d
[Homo sapiens]
Length = 713
Score = 37.0 bits (84), Expect = 0.040
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 22/91 (24%)
Query: 244 APTPN----PRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSV-HP 298
A TP+ PR + + ST F+ QP+ + T Y G ASPS+ H
Sbjct: 531 AATPDRIRFPRGTASRST-FHGQPRERRTAT----------------YNGPPASPSLSHE 573
Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTA 329
ATP+S R+ G T L ++L+S+L+ + +++A
Sbjct: 574 ATPLSQTRSRGSTNLFSKLTSKLTRSRNVSA 604
>gi|46852166 MAP/microtubule affinity-regulating kinase 3 isoform c
[Homo sapiens]
Length = 729
Score = 37.0 bits (84), Expect = 0.040
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 22/91 (24%)
Query: 244 APTPN----PRASLNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSV-HP 298
A TP+ PR + + ST F+ QP+ + T Y G ASPS+ H
Sbjct: 547 AATPDRIRFPRGTASRST-FHGQPRERRTAT----------------YNGPPASPSLSHE 589
Query: 299 ATPISPGRASGMTTLSAELSSRLSTAPDLTA 329
ATP+S R+ G T L ++L+S+L+ + +++A
Sbjct: 590 ATPLSQTRSRGSTNLFSKLTSKLTRSRNVSA 620
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,953,341
Number of Sequences: 37866
Number of extensions: 1187210
Number of successful extensions: 4457
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 4129
Number of HSP's gapped (non-prelim): 513
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.