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Search of human proteins with 198041688
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|198041688 syntaxin 16 isoform c [Homo sapiens]
(321 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|198041688 syntaxin 16 isoform c [Homo sapiens] 622 e-178
gi|47778943 syntaxin 16 isoform a [Homo sapiens] 616 e-177
gi|198041692 syntaxin 16 isoform d [Homo sapiens] 581 e-166
gi|34447229 syntaxin 16 isoform b [Homo sapiens] 580 e-166
gi|170932494 syntaxin 7 [Homo sapiens] 93 3e-19
gi|28933465 syntaxin 12 [Homo sapiens] 93 3e-19
gi|4759182 syntaxin 1A (brain) [Homo sapiens] 85 8e-17
gi|16418379 syntaxin 1B [Homo sapiens] 81 1e-15
gi|4759184 syntaxin 3 [Homo sapiens] 80 3e-15
gi|37577287 syntaxin 2 isoform 1 [Homo sapiens] 71 1e-12
gi|37577162 syntaxin 2 isoform 2 [Homo sapiens] 69 4e-12
gi|20149560 syntaxin 4 [Homo sapiens] 69 6e-12
gi|94400932 syntaxin 5 [Homo sapiens] 60 3e-09
gi|223972648 t-SNARE domain containing 1 [Homo sapiens] 52 5e-07
gi|33667038 syntaxin 11 [Homo sapiens] 48 1e-05
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 42 6e-04
gi|49258196 syntaxin 19 [Homo sapiens] 41 0.002
gi|4507285 syntaxin 10 [Homo sapiens] 38 0.011
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 38 0.014
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 38 0.014
gi|94721330 RUN and FYVE domain-containing 1 isoform b [Homo sap... 37 0.031
gi|94721332 RUN and FYVE domain-containing 1 isoform b [Homo sap... 37 0.031
gi|94721336 RUN and FYVE domain-containing 1 isoform a [Homo sap... 37 0.031
gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens] 36 0.040
gi|13699824 kinesin family member 11 [Homo sapiens] 35 0.068
gi|238908495 similar to pleckstrin homology domain protein (5V32... 35 0.089
gi|113374156 SNARE Vti1a-beta protein [Homo sapiens] 35 0.089
gi|4759188 syntaxin 8 [Homo sapiens] 35 0.12
gi|190194355 p90 autoantigen [Homo sapiens] 33 0.26
gi|20357512 macrophage scavenger receptor 1 isoform type 1 [Homo... 33 0.26
>gi|198041688 syntaxin 16 isoform c [Homo sapiens]
Length = 321
Score = 622 bits (1603), Expect = e-178
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAALADDRMALVSGISLDP 60
MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAALADDRMALVSGISLDP
Sbjct: 1 MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAALADDRMALVSGISLDP 60
Query: 61 EAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEI 120
EAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEI
Sbjct: 61 EAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEI 120
Query: 121 TTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYL 180
TTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYL
Sbjct: 121 TTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYL 180
Query: 181 KRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV 240
KRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV
Sbjct: 181 KRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV 240
Query: 241 QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV 300
QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV
Sbjct: 241 QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV 300
Query: 301 ILILFVIIIVLIVVLVGVKSR 321
ILILFVIIIVLIVVLVGVKSR
Sbjct: 301 ILILFVIIIVLIVVLVGVKSR 321
>gi|47778943 syntaxin 16 isoform a [Homo sapiens]
Length = 325
Score = 616 bits (1588), Expect = e-177
Identities = 321/325 (98%), Positives = 321/325 (98%), Gaps = 4/325 (1%)
Query: 1 MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAA----LADDRMALVSGI 56
MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAA LADDRMALVSGI
Sbjct: 1 MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAAELDELADDRMALVSGI 60
Query: 57 SLDPEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEH 116
SLDPEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEH
Sbjct: 61 SLDPEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEH 120
Query: 117 AIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQ 176
AIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQ
Sbjct: 121 AIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQ 180
Query: 177 SGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREI 236
SGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREI
Sbjct: 181 SGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREI 240
Query: 237 RQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNR 296
RQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNR
Sbjct: 241 RQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNR 300
Query: 297 KMLVILILFVIIIVLIVVLVGVKSR 321
KMLVILILFVIIIVLIVVLVGVKSR
Sbjct: 301 KMLVILILFVIIIVLIVVLVGVKSR 325
>gi|198041692 syntaxin 16 isoform d [Homo sapiens]
Length = 308
Score = 581 bits (1497), Expect = e-166
Identities = 304/321 (94%), Positives = 305/321 (95%), Gaps = 13/321 (4%)
Query: 1 MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAALADDRMALVSGISLDP 60
MATRRLTDAFLLLRNNSIQNRQLLAEQ + LADDRMALVSGISLDP
Sbjct: 1 MATRRLTDAFLLLRNNSIQNRQLLAEQ-------------ELDELADDRMALVSGISLDP 47
Query: 61 EAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEI 120
EAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEI
Sbjct: 48 EAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEI 107
Query: 121 TTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYL 180
TTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYL
Sbjct: 108 TTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYL 167
Query: 181 KRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV 240
KRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV
Sbjct: 168 KRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV 227
Query: 241 QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV 300
QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV
Sbjct: 228 QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV 287
Query: 301 ILILFVIIIVLIVVLVGVKSR 321
ILILFVIIIVLIVVLVGVKSR
Sbjct: 288 ILILFVIIIVLIVVLVGVKSR 308
>gi|34447229 syntaxin 16 isoform b [Homo sapiens]
Length = 304
Score = 580 bits (1494), Expect = e-166
Identities = 304/321 (94%), Positives = 304/321 (94%), Gaps = 17/321 (5%)
Query: 1 MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAALADDRMALVSGISLDP 60
MATRRLTDAFLLLRNNSIQNRQLLAEQ LADDRMALVSGISLDP
Sbjct: 1 MATRRLTDAFLLLRNNSIQNRQLLAEQ-----------------LADDRMALVSGISLDP 43
Query: 61 EAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEI 120
EAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEI
Sbjct: 44 EAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEI 103
Query: 121 TTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYL 180
TTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYL
Sbjct: 104 TTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYL 163
Query: 181 KRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV 240
KRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV
Sbjct: 164 KRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV 223
Query: 241 QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV 300
QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV
Sbjct: 224 QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV 283
Query: 301 ILILFVIIIVLIVVLVGVKSR 321
ILILFVIIIVLIVVLVGVKSR
Sbjct: 284 ILILFVIIIVLIVVLVGVKSR 304
>gi|170932494 syntaxin 7 [Homo sapiens]
Length = 261
Score = 93.2 bits (230), Expect = 3e-19
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 14/237 (5%)
Query: 90 QKMKELASLHDKHLNR-PTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRARACSE 148
QK+ + + + LN+ T DS E ++ Q QL + ++ S SE
Sbjct: 23 QKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTTPSE 82
Query: 149 QEGRLL--GNVVASLAQALQELSTSFRHAQSGYLKRMKN--REERSQHFFDTSVPLMDDG 204
Q R + +VA +L T+F+ Q +R K R+ S P
Sbjct: 83 QRQRKIQKDRLVAEFTTSL----TNFQKVQRQAAEREKEFVARVRASSRVSGSFPEDSSK 138
Query: 205 DDNTLYHRGFTEDQLV-----LVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVE 259
+ N + T+ Q+ + E + ++ ERE IRQ+ I D+NEIF+DLG MI E
Sbjct: 139 ERNLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHE 198
Query: 260 QGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLVILILFVIIIVLIVVLV 316
QG V+D I+ NVE + + + +QL +A YQ+K+RK L I+IL ++I V I+ L+
Sbjct: 199 QGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLCIIILILVIGVAIISLI 255
>gi|28933465 syntaxin 12 [Homo sapiens]
Length = 276
Score = 93.2 bits (230), Expect = 3e-19
Identities = 75/256 (29%), Positives = 132/256 (51%), Gaps = 15/256 (5%)
Query: 72 PKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSS---EEEHAIEITTQEITQL 128
P+ D IQ G I++ + A + + T DSS E ++ +T ++ +
Sbjct: 17 PQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKE 76
Query: 129 FHRCQRAVQALP-----SRARACSEQEGRLLGNVVASLA--QALQELSTSFRHAQSGYLK 181
+ + + +LP S R Q+ RL+ + A+L QA+Q S + +S
Sbjct: 77 TNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQR-RVSEKEKESIARA 135
Query: 182 RMKNREERSQHFFDTSVPLMDDGDD-NTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV 240
R +R + + + D ++ N + + ED++ + EQ+ +++ERE IRQ+
Sbjct: 136 RAGSRLSAEERQREEQLVSFDSHEEWNQMQSQ---EDEVAITEQDLELIKERETAIRQLE 192
Query: 241 QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV 300
I D+N+IF+DL MI +QG ++D I+ NVE S + E +QL +A YQKK+RK +
Sbjct: 193 ADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRAAYYQKKSRKKMC 252
Query: 301 ILILFVIIIVLIVVLV 316
IL+L + +I+LI+ L+
Sbjct: 253 ILVLVLSVIILILGLI 268
>gi|4759182 syntaxin 1A (brain) [Homo sapiens]
Length = 288
Score = 85.1 bits (209), Expect = 8e-17
Identities = 69/274 (25%), Positives = 138/274 (50%), Gaps = 21/274 (7%)
Query: 59 DPEAAIGVTK-RPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHA 117
D + A+ V + R ++ + V+EI+ + +I + ++E+ H L P D+ ++EE
Sbjct: 17 DDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEE-- 74
Query: 118 IEITTQEITQLFHRCQRAVQALPSRARACSEQEG--------RLLGNVVASLAQALQELS 169
+E +I + ++ + ++++ ++ ++EG R+ ++L++ E+
Sbjct: 75 LEELMSDIKKTANKVRSKLKSIE---QSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVM 131
Query: 170 TSFRHAQSGYLKRMKNREERSQHFFD---TSVPLMD--DGDDNTLYHRGFTEDQLVLVEQ 224
+ + QS Y +R K R +R TS L D + + ++ G D + +Q
Sbjct: 132 SEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSIS-KQ 190
Query: 225 NTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQ 284
+E R EI ++ SI +L+++F D+ ++ QG ++DRI+YNVE + E +
Sbjct: 191 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 250
Query: 285 LHKAEQYQKK-NRKMLVILILFVIIIVLIVVLVG 317
KA +YQ K RK ++I+I VI+ ++I VG
Sbjct: 251 TKKAVKYQSKARRKKIMIIICCVILGIVIASTVG 284
>gi|16418379 syntaxin 1B [Homo sapiens]
Length = 288
Score = 81.3 bits (199), Expect = 1e-15
Identities = 65/260 (25%), Positives = 133/260 (51%), Gaps = 22/260 (8%)
Query: 73 KWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRC 132
++ + V+EI+ + ++ + ++++ H L P D+ +++E +E T +I + ++
Sbjct: 31 EFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQE--LEDLTADIKKTANKV 88
Query: 133 QRAVQALPSRARACSEQEG--------RLLGNVVASLAQALQELSTSFRHAQSGYLKRMK 184
+ ++A+ ++ ++EG R+ ++L++ E+ T + QS Y R K
Sbjct: 89 RSKLKAIE---QSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCK 145
Query: 185 NREERSQHFFD---TSVPLMDDGDDNTLYHRGFTEDQLV---LVEQNTLMVEEREREIRQ 238
+R +R T+ L D + L FT+D + + +Q +E R EI +
Sbjct: 146 DRIQRQLEITGRTTTNEELEDMLESGKLAI--FTDDIKMDSQMTKQALNEIETRHNEIIK 203
Query: 239 IVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKK-NRK 297
+ SI +L+++F D+ ++ QG ++DRI+YNVE S E + KA +YQ K RK
Sbjct: 204 LETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRK 263
Query: 298 MLVILILFVIIIVLIVVLVG 317
++I+I V++ V++ +G
Sbjct: 264 KIMIIICCVVLGVVLASSIG 283
>gi|4759184 syntaxin 3 [Homo sapiens]
Length = 289
Score = 79.7 bits (195), Expect = 3e-15
Identities = 54/247 (21%), Positives = 124/247 (50%), Gaps = 12/247 (4%)
Query: 78 VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQ 137
++E + ++ +I + ++E L+ L+ P + ++++ +E T EI + + + ++
Sbjct: 39 IEETRLNIDKISEHVEEAKKLYSIILSAPIPEPKTKDD--LEQLTTEIKKRANNVRNKLK 96
Query: 138 ALPSRAR---ACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNREERSQHFF 194
++ S + R+ + + L++ E+ T + AQ + +R K R +R
Sbjct: 97 SMEKHIEEDEVRSSADLRIRKSQHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQRQLEIT 156
Query: 195 -----DTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEI 249
D + M + + ++ G + Q+ +Q +E R ++I ++ SI +L+++
Sbjct: 157 GKKTTDEELEEMLESGNPAIFTSGIIDSQIS--KQALSEIEGRHKDIVRLESSIKELHDM 214
Query: 250 FRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLVILILFVIII 309
F D+ ++ QG +LD I+ NV + E + KA +YQ + RK L+I+I+ V+++
Sbjct: 215 FMDIAMLVENQGEMLDNIELNVMHTVDHVEKARDETKKAVKYQSQARKKLIIIIVLVVVL 274
Query: 310 VLIVVLV 316
+ I+ L+
Sbjct: 275 LGILALI 281
>gi|37577287 syntaxin 2 isoform 1 [Homo sapiens]
Length = 287
Score = 70.9 bits (172), Expect = 1e-12
Identities = 54/250 (21%), Positives = 121/250 (48%), Gaps = 15/250 (6%)
Query: 78 VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQ 137
V+EI+ + +I Q ++E+ H L+ P + +EE +E +EI + ++ + ++
Sbjct: 36 VEEIRNSIDKITQYVEEVKKNHSIILSAPNPEGKIKEE--LEDLNKEIKKTANKIRAKLK 93
Query: 138 ALPS-----RARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNREERSQH 192
A+ + + + R+ + L++ E + AQ+ + +R K R +R
Sbjct: 94 AIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEAMAEYNEAQTLFRERSKGRIQRQLE 153
Query: 193 FF------DTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDL 246
D +++ G + ++ Q+ N +E R ++I ++ SI +L
Sbjct: 154 ITGRTTTDDELEEMLESGKPSIFTSDIISDSQITRQALNE--IESRHKDIMKLETSIREL 211
Query: 247 NEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLVILILFV 306
+E+F D+ + QG +++ I+ NV + E ++ KA +YQ K R+ L+ +I+ V
Sbjct: 212 HEMFMDMAMFVETQGEMINNIERNVMNATDYVEHAKEETKKAIKYQSKARRKLMFIIICV 271
Query: 307 IIIVLIVVLV 316
I++++I+ ++
Sbjct: 272 IVLLVILGII 281
>gi|37577162 syntaxin 2 isoform 2 [Homo sapiens]
Length = 288
Score = 69.3 bits (168), Expect = 4e-12
Identities = 54/253 (21%), Positives = 121/253 (47%), Gaps = 16/253 (6%)
Query: 78 VDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQ 137
V+EI+ + +I Q ++E+ H L+ P + +EE +E +EI + ++ + ++
Sbjct: 36 VEEIRNSIDKITQYVEEVKKNHSIILSAPNPEGKIKEE--LEDLNKEIKKTANKIRAKLK 93
Query: 138 AL-----PSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNREERSQH 192
A+ + + + R+ + L++ E + AQ+ + +R K R +R
Sbjct: 94 AIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEAMAEYNEAQTLFRERSKGRIQRQLE 153
Query: 193 FF------DTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDL 246
D +++ G + ++ Q+ N +E R ++I ++ SI +L
Sbjct: 154 ITGRTTTDDELEEMLESGKPSIFTSDIISDSQITRQALNE--IESRHKDIMKLETSIREL 211
Query: 247 NEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKK-NRKMLVILILF 305
+E+F D+ + QG +++ I+ NV + E ++ KA +YQ K RK +I+ +
Sbjct: 212 HEMFMDMAMFVETQGEMINNIERNVMNATDYVEHAKEETKKAIKYQSKARRKKWIIIAVS 271
Query: 306 VIIIVLIVVLVGV 318
V+++ +I +++G+
Sbjct: 272 VVLVAIIALIIGL 284
>gi|20149560 syntaxin 4 [Homo sapiens]
Length = 297
Score = 68.9 bits (167), Expect = 6e-12
Identities = 65/261 (24%), Positives = 121/261 (46%), Gaps = 16/261 (6%)
Query: 70 PPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLF 129
P ++ V I+ + ++ K++EL L P ++S ++E ++ EI QL
Sbjct: 37 PDEEFFHKVRTIRQTIVKLGNKVQELEKQQVTILATPLPEESMKQE--LQNLRDEIKQLG 94
Query: 130 HRCQRAVQALPSRARACSEQEG----RLLGNVVASLAQALQELSTSFRHAQSGYLKRMKN 185
+ ++A+ + E R+ L+Q EL QS Y R KN
Sbjct: 95 REIRLQLKAIEPQKEEADENYNSVNTRMRKTQHGVLSQQFVELINKCNSMQSEY--REKN 152
Query: 186 REERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEE-------REREIRQ 238
E + T+ ++ D + + G +E + + ++T + + R EI+Q
Sbjct: 153 VERIRRQLKITNAGMVSDEELEQMLDSGQSEVFVSNILKDTQVTRQALNEISARHSEIQQ 212
Query: 239 IVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKM 298
+ +SI +L++IF L + QG +++RI+ N+ S E G + + A + QKK RK
Sbjct: 213 LERSIRELHDIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKTALENQKKARKK 272
Query: 299 LVILILFV-IIIVLIVVLVGV 318
V++ + V I +VL+ V++GV
Sbjct: 273 KVLIAICVSITVVLLAVIIGV 293
>gi|94400932 syntaxin 5 [Homo sapiens]
Length = 355
Score = 60.1 bits (144), Expect = 3e-09
Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 29/255 (11%)
Query: 84 DVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRA 143
D+ K+++L L + + DD + E IE T I Q + + + L
Sbjct: 104 DLSNTFAKLEKLTILAKR---KSLFDDKAVE---IEELTYIIKQDINSLNKQIAQLQDFV 157
Query: 144 RACSEQEGRLL----GNVVASLAQALQELSTSFR---HAQSGYLKRMKNREERSQHFFDT 196
RA Q GR L +V SL L +S F+ ++ LK+ ++R E+ +
Sbjct: 158 RAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPVS 217
Query: 197 SVPLMDDGDDNTLYHRGF----------------TEDQLVLVEQNTLMVEEREREIRQIV 240
++PL + G T QL L+++ ++ R ++ I
Sbjct: 218 ALPLAPNHLGGGAVVLGAESHASKDVAIDMMDSRTSQQLQLIDEQDSYIQSRADTMQNIE 277
Query: 241 QSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLV 300
+I +L IF+ L M+ EQ + RID NV + + E ++ K Q NR ++V
Sbjct: 278 STIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRWLMV 337
Query: 301 ILILFVIIIVLIVVL 315
+ L +I+ +I V+
Sbjct: 338 KIFLILIVFFIIFVV 352
>gi|223972648 t-SNARE domain containing 1 [Homo sapiens]
Length = 513
Score = 52.4 bits (124), Expect = 5e-07
Identities = 58/278 (20%), Positives = 113/278 (40%), Gaps = 28/278 (10%)
Query: 55 GISLDPEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEE 114
G SL+P A T+ P + E+ +V RI + SL + T D+ E
Sbjct: 241 GFSLEPPRA---TQVDPCNLQELFQEMSANVFRINSSV---TSLERSLQSLGTPSDTQEL 294
Query: 115 EHAIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRH 174
++ QE + +V+ + R+ QE + L L T
Sbjct: 295 RDSLHTAQQETNKTIAASASSVKQMAELLRSSCPQER------LQQERPQLDRLKTQLSD 348
Query: 175 AQSGYLKRMKNREERSQHFFDTS---------VPLMDDGDDNTLYHRGFT----EDQLVL 221
A Y K E+S+ + P + DD +++ ++Q +L
Sbjct: 349 AIQCYGVVQKKIAEKSRALLPMAQRGSKQSPQAPFAELADDEKVFNGSDNMWQGQEQALL 408
Query: 222 ---VEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKT 278
E++ + RE I Q+ ++ D+N+I +DL +M+ EQG +D I+ ++E +
Sbjct: 409 PDITEEDLEAIRLREEAILQMESNLLDVNQIIKDLASMVSEQGEAVDSIEASLEAASSHA 468
Query: 279 EDGLKQLHKAEQYQKKNRKMLVILILFVIIIVLIVVLV 316
E + L A ++Q + K+ + + +L+++++
Sbjct: 469 EAARQLLAGASRHQLQRHKIKCCFLSAGVTALLVIIII 506
>gi|33667038 syntaxin 11 [Homo sapiens]
Length = 287
Score = 48.1 bits (113), Expect = 1e-05
Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 84 DVGRI-KQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSR 142
DV R+ KQ + L S+ L + ++I + ++ H RA++ L
Sbjct: 61 DVKRLGKQNARFLTSMR-------RLSSIKRDTNSIAKAIKARGEVIHCKLRAMKELSEA 113
Query: 143 ARACSEQEGRLLGNVVASLAQA-LQELSTSFRHAQSGY----LKRMKNREERSQHFFDTS 197
A A Q G + VA +++A L+ +F+ A Y +K+ N + R Q +
Sbjct: 114 AEA---QHGP--HSAVARISRAQYNALTLTFQRAMHDYNQAEMKQRDNCKIRIQRQLEIM 168
Query: 198 VPLMDDGDDNTLYHRG----FTEDQLVLVEQNTLM---VEEREREIRQIVQSISDLNEIF 250
+ ++ +G F+E+ L V+ +E R RE+ ++ I D++E+F
Sbjct: 169 GKEVSGDQIEDMFEQGKWDVFSENLLADVKGARAALNEIESRHRELLRLESRIRDVHELF 228
Query: 251 RDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKN 295
+ ++ +Q L+ I+ NV+++ T Q+ KA QY++KN
Sbjct: 229 LQMAVLVEKQADTLNVIELNVQKTVDYTGQAKAQVRKAVQYEEKN 273
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 42.4 bits (98), Expect = 6e-04
Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 28/227 (12%)
Query: 74 WVDGVDEIQYDVGRIKQKMKELA-SLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRC 132
+V + +++ V + QK + L +L K + L++ EE ++ + I H+
Sbjct: 286 YVQELQKLKSSVNELTQKNQTLTENLLKKEQDYTKLEEKHNEE---SVSKKNIQATLHQK 342
Query: 133 QRAVQALPSRARACSEQEGRL------LGNVVASLAQALQELSTSFRHAQSGYLKRMKNR 186
Q L SR A R+ G L + L E+ T ++H ++ + + + R
Sbjct: 343 DLDCQQLQSRLSASETSLHRIHVELSEKGEATQKLKEELSEVETKYQHLKAEFKQLQQQR 402
Query: 187 EERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIV---QSI 243
EE+ QH L + N L H E + L E + + E+R+ +++ Q +
Sbjct: 403 EEKEQH------GLQLQSEINQL-HSKLLETERQLGEAHGRLKEQRQLSSEKLMDKEQQV 455
Query: 244 SDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQ 290
+DL L + E+ T + + ++++ KQ H+ +Q
Sbjct: 456 ADLQLKLSRLEEQLKEKVTNSTELQHQLDKT--------KQQHQEQQ 494
>gi|49258196 syntaxin 19 [Homo sapiens]
Length = 294
Score = 40.8 bits (94), Expect = 0.002
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 201 MDDGDDNTLYHRGFTE--DQLVLVEQNTLM-----VEEREREIRQIVQSISDLNEIFRDL 253
M + D N + H+G E ++ +L E N +E+R +E+ + I DL ++F +
Sbjct: 177 MSEEDVNDMLHQGKWEVFNESLLTEINITKAQLSEIEQRHKELVNLENQIKDLRDLFIQI 236
Query: 254 GAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKN 295
++ EQG ++ I+ V + + ++ A +Y+K+N
Sbjct: 237 SLLVEEQGESINNIEMTVNSTKEYVNNTKEKFGLAVKYKKRN 278
>gi|4507285 syntaxin 10 [Homo sapiens]
Length = 249
Score = 38.1 bits (87), Expect = 0.011
Identities = 18/89 (20%), Positives = 48/89 (53%)
Query: 227 LMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLH 286
L+++E+++++ + SI L + +G + EQG +LD ++ + + + L++L
Sbjct: 158 LIMDEQDQQLEMVSGSIQVLKHMSGRVGEELDEQGIMLDAFAQEMDHTQSRMDGVLRKLA 217
Query: 287 KAEQYQKKNRKMLVILILFVIIIVLIVVL 315
K R+ I +L ++++++++L
Sbjct: 218 KVSHMTSDRRQWCAIAVLVGVLLLVLILL 246
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 37.7 bits (86), Expect = 0.014
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 42/179 (23%)
Query: 118 IEITTQEITQLFHRCQRAVQALPSRA--RACSEQEG-RLLGNVVASLAQALQELSTSFRH 174
IE+TTQ +++L + R + A A S Q+G R + + VA L +A+ EL+
Sbjct: 4609 IELTTQSLSELEAQFLRMSKVPTDLAVEEALSLQDGCRAILDEVAGLGEAVDELN----- 4663
Query: 175 AQSGYLKRMKNREERSQHFFDTSVPLMDDGDDN--TLYHR--GFTEDQLVLVEQNTL--- 227
++ + F T P D + TLYHR TE ++ L+E T
Sbjct: 4664 -------------QKKEGFRSTGQPWQPDKMLHLVTLYHRLKRQTEQRVSLLEDTTSAYQ 4710
Query: 228 ----MVEEREREIRQIVQSISDLNE----------IFRDLGAMIVEQGTVLDRIDYNVE 272
M ++ ER+++ + + S +NE ++ L + + G VL R+ ++E
Sbjct: 4711 EHEKMCQQLERQLKSVKEEQSKVNEETLPAEEKLKMYHSLAGSLQDSGIVLKRVTIHLE 4769
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 37.7 bits (86), Expect = 0.014
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 42/179 (23%)
Query: 118 IEITTQEITQLFHRCQRAVQALPSRA--RACSEQEG-RLLGNVVASLAQALQELSTSFRH 174
IE+TTQ +++L + R + A A S Q+G R + + VA L +A+ EL+
Sbjct: 4680 IELTTQSLSELEAQFLRMSKVPTDLAVEEALSLQDGCRAILDEVAGLGEAVDELN----- 4734
Query: 175 AQSGYLKRMKNREERSQHFFDTSVPLMDDGDDN--TLYHR--GFTEDQLVLVEQNTL--- 227
++ + F T P D + TLYHR TE ++ L+E T
Sbjct: 4735 -------------QKKEGFRSTGQPWQPDKMLHLVTLYHRLKRQTEQRVSLLEDTTSAYQ 4781
Query: 228 ----MVEEREREIRQIVQSISDLNE----------IFRDLGAMIVEQGTVLDRIDYNVE 272
M ++ ER+++ + + S +NE ++ L + + G VL R+ ++E
Sbjct: 4782 EHEKMCQQLERQLKSVKEEQSKVNEETLPAEEKLKMYHSLAGSLQDSGIVLKRVTIHLE 4840
>gi|94721330 RUN and FYVE domain-containing 1 isoform b [Homo
sapiens]
Length = 600
Score = 36.6 bits (83), Expect = 0.031
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 25/203 (12%)
Query: 99 HDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVV 158
H+K L EE AI + Q+FH+ Q A +L + A + EG+ V+
Sbjct: 335 HEKQDTLVALRQQLEEVKAINL------QMFHKAQNAESSLQQKNEAITSFEGK-TNQVM 387
Query: 159 ASLAQALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQ 218
+S+ Q + L S R Q + K ++E + L + + + ++
Sbjct: 388 SSMKQMEERLQHSERARQGAEERSHKLQQELGGRIGALQLQLSQLHEQCSSLEKELKSEK 447
Query: 219 LVLVEQNTLMVEERERE------IRQIVQSISDLNEIFR-------DLGAMIVEQGTVLD 265
EQ + E + E +R +Q + L + R +L + EQ L
Sbjct: 448 ----EQRQALQRELQHEKDTSSLLRMELQQVEGLKKELRELQDEKAELQKICEEQEQALQ 503
Query: 266 RIDYNVEQSCIKTEDGLKQLHKA 288
+ ++ QS +K ED +K++++A
Sbjct: 504 EMGLHLSQSKLKMED-IKEVNQA 525
>gi|94721332 RUN and FYVE domain-containing 1 isoform b [Homo
sapiens]
Length = 600
Score = 36.6 bits (83), Expect = 0.031
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 25/203 (12%)
Query: 99 HDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVV 158
H+K L EE AI + Q+FH+ Q A +L + A + EG+ V+
Sbjct: 335 HEKQDTLVALRQQLEEVKAINL------QMFHKAQNAESSLQQKNEAITSFEGK-TNQVM 387
Query: 159 ASLAQALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQ 218
+S+ Q + L S R Q + K ++E + L + + + ++
Sbjct: 388 SSMKQMEERLQHSERARQGAEERSHKLQQELGGRIGALQLQLSQLHEQCSSLEKELKSEK 447
Query: 219 LVLVEQNTLMVEERERE------IRQIVQSISDLNEIFR-------DLGAMIVEQGTVLD 265
EQ + E + E +R +Q + L + R +L + EQ L
Sbjct: 448 ----EQRQALQRELQHEKDTSSLLRMELQQVEGLKKELRELQDEKAELQKICEEQEQALQ 503
Query: 266 RIDYNVEQSCIKTEDGLKQLHKA 288
+ ++ QS +K ED +K++++A
Sbjct: 504 EMGLHLSQSKLKMED-IKEVNQA 525
>gi|94721336 RUN and FYVE domain-containing 1 isoform a [Homo
sapiens]
Length = 708
Score = 36.6 bits (83), Expect = 0.031
Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 25/203 (12%)
Query: 99 HDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVV 158
H+K L EE AI + Q+FH+ Q A +L + A + EG+ V+
Sbjct: 443 HEKQDTLVALRQQLEEVKAINL------QMFHKAQNAESSLQQKNEAITSFEGK-TNQVM 495
Query: 159 ASLAQALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQ 218
+S+ Q + L S R Q + K ++E + L + + + ++
Sbjct: 496 SSMKQMEERLQHSERARQGAEERSHKLQQELGGRIGALQLQLSQLHEQCSSLEKELKSEK 555
Query: 219 LVLVEQNTLMVEERERE------IRQIVQSISDLNEIFR-------DLGAMIVEQGTVLD 265
EQ + E + E +R +Q + L + R +L + EQ L
Sbjct: 556 ----EQRQALQRELQHEKDTSSLLRMELQQVEGLKKELRELQDEKAELQKICEEQEQALQ 611
Query: 266 RIDYNVEQSCIKTEDGLKQLHKA 288
+ ++ QS +K ED +K++++A
Sbjct: 612 EMGLHLSQSKLKMED-IKEVNQA 633
>gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]
Length = 1044
Score = 36.2 bits (82), Expect = 0.040
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 67 TKRPPPKWVDGVD-EIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEI 125
TK+ V G++ EIQ + R KQ+++ L SLH+ L +E A + ++
Sbjct: 697 TKKIKEVTVRGLEPEIQKLIARHKQEVRRLKSLHEAEL-------LQSDERASQRCLRQA 749
Query: 126 TQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKN 185
+L + +R +AL + R + Q R + L Q L+E S++ A ++ +
Sbjct: 750 EELREQLEREKEALGQQERERARQRQRA---ELEELRQQLEESSSALTRALRAEFEKGRE 806
Query: 186 REER 189
+ER
Sbjct: 807 EQER 810
>gi|13699824 kinesin family member 11 [Homo sapiens]
Length = 1056
Score = 35.4 bits (80), Expect = 0.068
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 88 IKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRARACS 147
+++ K+++ LH K + +D + E A +I + + LF+ + ++ S+ +A
Sbjct: 503 VEETTKDVSGLHSKLDRKKAVDQHNAE--AQDIFGKNLNSLFNNMEELIKDGSSKQKAML 560
Query: 148 EQEGRLLGNVVASLAQALQELST 170
E L GN+++S AL ++T
Sbjct: 561 EVHKTLFGNLLSSSVSALDTITT 583
>gi|238908495 similar to pleckstrin homology domain protein (5V327)
[Homo sapiens]
Length = 506
Score = 35.0 bits (79), Expect = 0.089
Identities = 28/131 (21%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 67 TKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEIT 126
+++PPP + ++ +I++KM++L L +K L + ++ E A+E + +
Sbjct: 275 SEQPPPS-----GGLHSNLRQIEEKMQQL--LEEKLLAEKRMKENEERSRALEEEREFYS 327
Query: 127 QLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNR 186
Q ++Q L + + +E+E + V L + L+E + R + G +++N+
Sbjct: 328 SQSQALQNSLQELTAEKQQ-AERELKAEVKVRMDLERRLREAEGALRSLEQGLNSKVRNK 386
Query: 187 EERSQHFFDTS 197
E+ + D S
Sbjct: 387 EKEERMRADVS 397
Score = 29.3 bits (64), Expect = 4.9
Identities = 35/172 (20%), Positives = 77/172 (44%), Gaps = 8/172 (4%)
Query: 80 EIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSE-EEHAIEITTQEITQLFHRCQRAVQA 138
E Q + ++ ++ +EL ++ L+ E E+ E QE+ + +R ++
Sbjct: 162 EKQEYLDKLMEETEELCLQREQREELERLNQVLEAEKQQFEEVVQELRMEQEQIKRELE- 220
Query: 139 LPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSV 198
L +R EQE + L ++ SL Q L+ELS + L+ ++ E Q + S
Sbjct: 221 LTARCLKGVEQEKKELRHLTESLQQTLEELSIEKKKT----LEMLEENENHLQTLANQSE 276
Query: 199 PLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIF 250
G ++ + E+++ + + L+ E+R +E + +++ + E +
Sbjct: 277 QPPPSGGLHSNLRQ--IEEKMQQLLEEKLLAEKRMKENEERSRALEEEREFY 326
>gi|113374156 SNARE Vti1a-beta protein [Homo sapiens]
Length = 217
Score = 35.0 bits (79), Expect = 0.089
Identities = 39/211 (18%), Positives = 84/211 (39%), Gaps = 27/211 (12%)
Query: 109 DDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQEL 168
D+ + +E +E +L + V+ +P ++R + N + S Q + +L
Sbjct: 32 DEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRG-------MYSNRMRSYKQEMGKL 84
Query: 169 STSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLM 228
T F+ ++ Y ++N L DDG+ + E+Q + NT
Sbjct: 85 ETDFKRSRIAYSDEVRNEL------------LGDDGNSS--------ENQRAHLLDNTER 124
Query: 229 VEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKA 288
+E R + Q + +I +++ + + R + ++ + L
Sbjct: 125 LERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGM 184
Query: 289 EQYQKKNRKMLVILILFVIIIVLIVVLVGVK 319
+ +NR +LVIL + V+I +L+ + V+
Sbjct: 185 LRRIIQNRILLVILGIIVVITILMAITFSVR 215
>gi|4759188 syntaxin 8 [Homo sapiens]
Length = 236
Score = 34.7 bits (78), Expect = 0.12
Identities = 19/91 (20%), Positives = 49/91 (53%)
Query: 223 EQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGL 282
+Q +++E++ + + IS ++ +++G + EQ ++D + VE + K +
Sbjct: 142 QQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRNET 201
Query: 283 KQLHKAEQYQKKNRKMLVILILFVIIIVLIV 313
++++ ++ ++VIL+L V I+V+ V
Sbjct: 202 RRVNMVDRKSASCGMIMVILLLLVAIVVVAV 232
>gi|190194355 p90 autoantigen [Homo sapiens]
Length = 905
Score = 33.5 bits (75), Expect = 0.26
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 34/181 (18%)
Query: 130 HRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNREER 189
HRCQR +E E R L +++ + + +ELS LK + ER
Sbjct: 661 HRCQRTQ----------AETEARTLASMLREVERKNEELSV--------LLKAQQVESER 702
Query: 190 SQ----HFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIR-------Q 238
+Q H F + L ++ H T+ + L+++N E++ ++++ +
Sbjct: 703 AQSDIEHLFQHNRKLESVAEE----HEILTKSYMELLQRNE-STEKKNKDLQITCDSLNK 757
Query: 239 IVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKM 298
++++ LNE ++ + Q + V+ + E L LH+ + Q++ K
Sbjct: 758 QIETVKKLNESLKEQNEKSIAQLIEKEEQRKEVQNQLVDREHKLANLHQKTKVQEEKIKT 817
Query: 299 L 299
L
Sbjct: 818 L 818
>gi|20357512 macrophage scavenger receptor 1 isoform type 1 [Homo
sapiens]
Length = 451
Score = 33.5 bits (75), Expect = 0.26
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 176 QSGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGF--TEDQL---VLVEQNTLM-- 228
Q +++ M N E+R QH D LMD T + + F T DQ +L++ +TL
Sbjct: 111 QEVFMEHMSNMEKRIQHILDMEANLMD-----TEHFQNFSMTTDQRFNDILLQLSTLFSS 165
Query: 229 VEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHK 287
V+ I +I +S+ LN DL I + ++ ++++ K ++ + +L +
Sbjct: 166 VQGHGNAIDEISKSLISLNTTLLDLQLNI-------ENLNGKIQENTFKQQEEISKLEE 217
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,616,608
Number of Sequences: 37866
Number of extensions: 432140
Number of successful extensions: 1973
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1892
Number of HSP's gapped (non-prelim): 147
length of query: 321
length of database: 18,247,518
effective HSP length: 102
effective length of query: 219
effective length of database: 14,385,186
effective search space: 3150355734
effective search space used: 3150355734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.