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Search of human proteins with 197304733
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197304733 cytochrome b-561 domain containing 1 isoform 5
[Homo sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Hom... 270 2e-73
gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom... 205 9e-54
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom... 176 3e-45
gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo... 101 2e-22
gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens] 46 9e-06
gi|9624988 hypothetical protein LOC56260 [Homo sapiens] 45 2e-05
gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens] 44 3e-05
gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens] 37 0.004
gi|224451053 homeobox C14 [Homo sapiens] 37 0.005
gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens] 35 0.012
gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens] 33 0.079
gi|169217799 PREDICTED: hypothetical protein [Homo sapiens] 30 0.39
gi|239752508 PREDICTED: hypothetical protein XP_002347011 [Homo ... 30 0.39
gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo ... 30 0.39
gi|118600985 zinc finger protein 91 [Homo sapiens] 29 1.1
gi|168823435 hypothetical protein LOC79747 [Homo sapiens] 28 1.5
gi|154090997 coiled-coil domain containing 13 [Homo sapiens] 28 2.0
gi|40805106 fucosyltransferase 10 [Homo sapiens] 27 3.3
gi|5729925 melanoma inhibitory activity [Homo sapiens] 27 3.3
gi|239750956 PREDICTED: hypothetical protein XP_002347617 [Homo ... 27 4.4
gi|239745362 PREDICTED: hypothetical protein XP_002343447 [Homo ... 27 4.4
gi|223468693 hypothetical protein LOC100130361 [Homo sapiens] 26 7.4
gi|223468690 hypothetical protein LOC100132994 [Homo sapiens] 26 7.4
gi|42542381 solute carrier family 28, member 1 isoform 1 [Homo s... 26 9.7
gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens] 26 9.7
gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens] 26 9.7
>gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Homo
sapiens]
Length = 128
Score = 270 bits (690), Expect = 2e-73
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE
Sbjct: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
Query: 61 GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWRMYESTSFFSGLQARHEAYWLSPM 120
GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWRMYESTSFFSGLQARHEAYWLSPM
Sbjct: 61 GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWRMYESTSFFSGLQARHEAYWLSPM 120
Query: 121 FTVLPLHG 128
FTVLPLHG
Sbjct: 121 FTVLPLHG 128
>gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo
sapiens]
Length = 133
Score = 205 bits (521), Expect = 9e-54
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE
Sbjct: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
Query: 61 GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWR 97
GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWR
Sbjct: 61 GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWR 97
>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
sapiens]
Length = 251
Score = 176 bits (447), Expect = 3e-45
Identities = 94/134 (70%), Positives = 98/134 (73%), Gaps = 20/134 (14%)
Query: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE
Sbjct: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
Query: 61 GGRARWVMPEIPALWEADAGGSLE----------VFSPGTLYSWPWRMYESTSFFSGLQA 110
GGRARWVMPEIPALWEADAGGSLE +FSP S FF +A
Sbjct: 61 GGRARWVMPEIPALWEADAGGSLEFCLCMAEAILLFSP----------EHSLFFFCSRKA 110
Query: 111 RHEAYWLSPMFTVL 124
R +W +L
Sbjct: 111 RIRLHWAGQTLAIL 124
>gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo
sapiens]
Length = 229
Score = 101 bits (251), Expect = 2e-22
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT 49
MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT
Sbjct: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT 49
>gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens]
Length = 573
Score = 45.8 bits (107), Expect = 9e-06
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 47 PGTKTGPLMEDRSEGGRARWVMPEIPALWEADAGGSLEV 85
P + T L D + G+A W P IPALWEA+A GSLEV
Sbjct: 223 PSSLTSSLCTDNNPAGQAYWFTPVIPALWEAEARGSLEV 261
>gi|9624988 hypothetical protein LOC56260 [Homo sapiens]
Length = 159
Score = 45.1 bits (105), Expect = 2e-05
Identities = 24/37 (64%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Query: 62 GRARWVMPEIPALWEADAGGSLEVFSPGTLYSWP-WR 97
GRARW+MP IPALWEA AG S EV S + +WP WR
Sbjct: 36 GRARWLMPVIPALWEAKAGRSPEVRS--SKPAWPTWR 70
>gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens]
Length = 222
Score = 43.9 bits (102), Expect = 3e-05
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 15 EPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT 49
E + R LR SG AHLVALGFTIF+ L+RPG+
Sbjct: 8 ESHIYRALRTASGAAAHLVALGFTIFVAVLARPGS 42
>gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]
Length = 161
Score = 37.0 bits (84), Expect = 0.004
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 62 GRARWVMPEIPALWEADAGG 81
GRARW+ P IPALWEA+A G
Sbjct: 61 GRARWLTPVIPALWEAEACG 80
>gi|224451053 homeobox C14 [Homo sapiens]
Length = 188
Score = 36.6 bits (83), Expect = 0.005
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 63 RARWVMPEIPALWEADAGGS 82
RARW+ P IPALWEA+AG S
Sbjct: 3 RARWLTPVIPALWEAEAGRS 22
>gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens]
Length = 99
Score = 35.4 bits (80), Expect = 0.012
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 64 ARWVMPEIPALWEADAGGSLEVFS 87
ARW+ P IPALW+A+AGG E+ S
Sbjct: 68 ARWLTPVIPALWKAEAGGLPELRS 91
>gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]
Length = 141
Score = 32.7 bits (73), Expect = 0.079
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 47 PGTKTGP---LMEDRSEGGRARWVMPEIPALWEADAGGSLE 84
P +GP L G P IPALWEA+AGGS E
Sbjct: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPE 131
>gi|169217799 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 0.39
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 49 TKTGPLMEDRSEGGRARWVMPEIP 72
TK G L +S +A+W+MPEIP
Sbjct: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
>gi|239752508 PREDICTED: hypothetical protein XP_002347011 [Homo
sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 0.39
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 49 TKTGPLMEDRSEGGRARWVMPEIP 72
TK G L +S +A+W+MPEIP
Sbjct: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
>gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo
sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 0.39
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 49 TKTGPLMEDRSEGGRARWVMPEIP 72
TK G L +S +A+W+MPEIP
Sbjct: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
>gi|118600985 zinc finger protein 91 [Homo sapiens]
Length = 1191
Score = 28.9 bits (63), Expect = 1.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 67 VMPEIPALWEADAGGS 82
+ P IP LWEA+AGGS
Sbjct: 1158 ITPVIPLLWEAEAGGS 1173
>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
Length = 1667
Score = 28.5 bits (62), Expect = 1.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 65 RWVMPEIPALWEADAGGSLEVFSPGTLYS---WPWRMYE 100
RW++ EI A+W+ GG L + GT PW+ +E
Sbjct: 137 RWIISEIYAVWKIFNGGILSNYFKGTSGEPPLLPWKPWE 175
>gi|154090997 coiled-coil domain containing 13 [Homo sapiens]
Length = 715
Score = 28.1 bits (61), Expect = 2.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 32 LVALGFTIFLTALSRPGT----KTGPLMEDRSEGGRARWVMPEIPALWEA 77
+ +LG T+ +AL+RP +T P D E + + EI ALW+A
Sbjct: 506 VTSLGHTLVESALTRPSLPSPHRTSPRFSDSPEQKGWQAQVSEIKALWQA 555
>gi|40805106 fucosyltransferase 10 [Homo sapiens]
Length = 479
Score = 27.3 bits (59), Expect = 3.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 2 QPLEVGLVPAPAGEPRLTRWL 22
+PL++G+VP G P +T WL
Sbjct: 295 RPLKLGVVPVYYGSPSITDWL 315
>gi|5729925 melanoma inhibitory activity [Homo sapiens]
Length = 131
Score = 27.3 bits (59), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 32 LVALGFTIFLTALSRPGTKTGPL 54
LV LG I L+A S PG + GP+
Sbjct: 5 LVCLGVIILLSAFSGPGVRGGPM 27
>gi|239750956 PREDICTED: hypothetical protein XP_002347617 [Homo
sapiens]
Length = 139
Score = 26.9 bits (58), Expect = 4.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 90 TLYSWPWRMYESTS--FFSGLQARHEAYWLSPMFTVLPLH 127
+LY+WP S + FF G ++ W +P FT LH
Sbjct: 29 SLYTWPLEDEASATLAFFWGQESAPSLTWCAPPFTWSTLH 68
>gi|239745362 PREDICTED: hypothetical protein XP_002343447 [Homo
sapiens]
Length = 139
Score = 26.9 bits (58), Expect = 4.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 90 TLYSWPWRMYESTS--FFSGLQARHEAYWLSPMFTVLPLH 127
+LY+WP S + FF G ++ W +P FT LH
Sbjct: 29 SLYTWPLEDEASATLAFFWGQESAPSLTWCAPPFTWSTLH 68
>gi|223468693 hypothetical protein LOC100130361 [Homo sapiens]
Length = 514
Score = 26.2 bits (56), Expect = 7.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 57 DRSEGGRARWVMPEIPALWEADAGGSLEVFSPGTLYSW 94
D G R V+ P W+ + G L + PG + +W
Sbjct: 134 DAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAW 171
>gi|223468690 hypothetical protein LOC100132994 [Homo sapiens]
Length = 514
Score = 26.2 bits (56), Expect = 7.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 57 DRSEGGRARWVMPEIPALWEADAGGSLEVFSPGTLYSW 94
D G R V+ P W+ + G L + PG + +W
Sbjct: 134 DAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAW 171
>gi|42542381 solute carrier family 28, member 1 isoform 1 [Homo
sapiens]
Length = 649
Score = 25.8 bits (55), Expect = 9.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 12 PAGEPRLTRWLRRGSGILAHL 32
P G PRL W +RG + A L
Sbjct: 142 PQGHPRLLLWFKRGLALAAFL 162
>gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens]
Length = 748
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 26 SGILAHLVALGFTIFLTALSRPGTKTGP 53
SG+ A L+ FTIF + RP +T P
Sbjct: 187 SGVAADLMGRDFTIFRSLGQRPSLRTEP 214
>gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens]
Length = 749
Score = 25.8 bits (55), Expect = 9.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 26 SGILAHLVALGFTIFLTALSRPGTKTGP 53
SG+ A L+ FTIF + RP +T P
Sbjct: 187 SGVAADLMGRDFTIFRSLGQRPSLRTEP 214
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,872,507
Number of Sequences: 37866
Number of extensions: 263045
Number of successful extensions: 525
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 27
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.