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Search of human proteins with 197304729
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197304729 cytochrome b-561 domain containing 1 isoform 3
[Homo sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Hom... 352 1e-97
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom... 345 1e-95
gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo... 343 5e-95
gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens] 153 6e-38
gi|63054832 cytochrome b-561 [Homo sapiens] 45 4e-05
gi|63054830 cytochrome b-561 [Homo sapiens] 45 4e-05
gi|63054828 cytochrome b-561 [Homo sapiens] 45 4e-05
gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens] 44 9e-05
gi|241896889 cytochrome b, ascorbate dependent 3 isoform 2 [Homo... 37 0.011
gi|241896875 cytochrome b, ascorbate dependent 3 isoform 1 [Homo... 37 0.011
gi|241896864 cytochrome b, ascorbate dependent 3 isoform 2 [Homo... 37 0.011
gi|66346670 Rhesus blood group, CcEe antigens isoform 2 [Homo sa... 31 0.46
gi|66346668 Rhesus blood group, CcEe antigens isoform 4 [Homo sa... 31 0.46
gi|66346666 Rhesus blood group, CcEe antigens isoform 3 [Homo sa... 31 0.46
gi|66346664 Rhesus blood group, CcEe antigens isoform 1 [Homo sa... 31 0.46
gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens] 30 1.3
gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens] 30 1.3
gi|52627164 olfactory receptor, family 6, subfamily F, member 1 ... 28 3.0
gi|223468600 leishmanolysin-like isoform 1 [Homo sapiens] 28 5.1
gi|110556638 leishmanolysin-like isoform 2 [Homo sapiens] 28 5.1
gi|239755457 PREDICTED: similar to patatin-like phospholipase do... 28 5.1
gi|189571657 glycerophosphodiester phosphodiesterase domain cont... 27 6.7
gi|27477074 interleukin 17B receptor precursor [Homo sapiens] 27 8.7
>gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Homo
sapiens]
Length = 172
Score = 352 bits (902), Expect = 1e-97
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MQPLEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTR 60
MQPLEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTR
Sbjct: 1 MQPLEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTR 60
Query: 61 SELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMA 120
SELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMA
Sbjct: 61 SELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMA 120
Query: 121 TVTVLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM 172
TVTVLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM
Sbjct: 121 TVTVLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM 172
>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
sapiens]
Length = 251
Score = 345 bits (885), Expect = 1e-95
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 4 LEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSEL 63
LEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSEL
Sbjct: 83 LEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSEL 142
Query: 64 PHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVT 123
PHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVT
Sbjct: 143 PHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVT 202
Query: 124 VLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM 172
VLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM
Sbjct: 203 VLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM 251
>gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo
sapiens]
Length = 229
Score = 343 bits (879), Expect = 5e-95
Identities = 168/169 (99%), Positives = 168/169 (99%)
Query: 4 LEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSEL 63
L FCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSEL
Sbjct: 61 LAFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSEL 120
Query: 64 PHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVT 123
PHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVT
Sbjct: 121 PHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVT 180
Query: 124 VLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM 172
VLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM
Sbjct: 181 VLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM 229
>gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens]
Length = 222
Score = 153 bits (387), Expect = 6e-38
Identities = 80/171 (46%), Positives = 108/171 (63%)
Query: 1 MQPLEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTR 60
+ L F M EA+L+FSPE SL SRK R R HW Q LA+LCA LGLG +I + +
Sbjct: 51 LMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQ 110
Query: 61 SELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMA 120
HLV+ H G L +L +Q G+ LL P+ +A+LKLYH T GLV YL+
Sbjct: 111 LGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLG 170
Query: 121 TVTVLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKME 171
+ ++LLGM S+WF A + GAAWYL + PV +LVIM+Q+S +YL RK+++
Sbjct: 171 SASLLLGMCSLWFTASVTGAAWYLAVLCPVLTSLVIMNQVSNAYLYRKRIQ 221
>gi|63054832 cytochrome b-561 [Homo sapiens]
Length = 251
Score = 44.7 bits (104), Expect = 4e-05
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 8 LCMAEAILLFSPEHSLFFFCSRKARIR----LHWAGQTLAILCAALGLGFIISSRTRSEL 63
LCM ++ L + R R LH A++ A +GL + +
Sbjct: 55 LCMVIGLIFLQGNALLVYRVFRNEAKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGY 114
Query: 64 PHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVT 123
L S HSW G L + VQ L G A S +R + H+ G ++L++ T
Sbjct: 115 ADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGT 174
Query: 124 VLLGM 128
LLG+
Sbjct: 175 ALLGL 179
>gi|63054830 cytochrome b-561 [Homo sapiens]
Length = 251
Score = 44.7 bits (104), Expect = 4e-05
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 8 LCMAEAILLFSPEHSLFFFCSRKARIR----LHWAGQTLAILCAALGLGFIISSRTRSEL 63
LCM ++ L + R R LH A++ A +GL + +
Sbjct: 55 LCMVIGLIFLQGNALLVYRVFRNEAKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGY 114
Query: 64 PHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVT 123
L S HSW G L + VQ L G A S +R + H+ G ++L++ T
Sbjct: 115 ADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGT 174
Query: 124 VLLGM 128
LLG+
Sbjct: 175 ALLGL 179
>gi|63054828 cytochrome b-561 [Homo sapiens]
Length = 251
Score = 44.7 bits (104), Expect = 4e-05
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 8 LCMAEAILLFSPEHSLFFFCSRKARIR----LHWAGQTLAILCAALGLGFIISSRTRSEL 63
LCM ++ L + R R LH A++ A +GL + +
Sbjct: 55 LCMVIGLIFLQGNALLVYRVFRNEAKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGY 114
Query: 64 PHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVT 123
L S HSW G L + VQ L G A S +R + H+ G ++L++ T
Sbjct: 115 ADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGT 174
Query: 124 VLLGM 128
LLG+
Sbjct: 175 ALLGL 179
>gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens]
Length = 286
Score = 43.5 bits (101), Expect = 9e-05
Identities = 24/102 (23%), Positives = 48/102 (47%)
Query: 27 CSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQAL 86
CS+ +H +A + A + + + + + + ++ S HSWVG + ++ +Q L
Sbjct: 77 CSKLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLIAVICYLLQLL 136
Query: 87 CGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVTVLLGM 128
G + A +S A L H+ G+V++ T L+G+
Sbjct: 137 SGFSVFLLPWAPLSLRAFLMPIHVYSGIVIFGTVIATALMGL 178
>gi|241896889 cytochrome b, ascorbate dependent 3 isoform 2 [Homo
sapiens]
Length = 242
Score = 36.6 bits (83), Expect = 0.011
Identities = 23/94 (24%), Positives = 41/94 (43%)
Query: 35 LHWAGQTLAILCAALGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQALCGLCLLCP 94
LH A +A + +GL + + +L S HSW+G T+ A Q G +
Sbjct: 82 LHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFLL 141
Query: 95 RAARVSRVARLKLYHLTCGLVVYLMATVTVLLGM 128
A + + LK H+ G + ++ +V+ G+
Sbjct: 142 PWASMWLRSLLKPIHVFFGAAILSLSIASVISGI 175
>gi|241896875 cytochrome b, ascorbate dependent 3 isoform 1 [Homo
sapiens]
Length = 259
Score = 36.6 bits (83), Expect = 0.011
Identities = 23/94 (24%), Positives = 41/94 (43%)
Query: 35 LHWAGQTLAILCAALGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQALCGLCLLCP 94
LH A +A + +GL + + +L S HSW+G T+ A Q G +
Sbjct: 99 LHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFLL 158
Query: 95 RAARVSRVARLKLYHLTCGLVVYLMATVTVLLGM 128
A + + LK H+ G + ++ +V+ G+
Sbjct: 159 PWASMWLRSLLKPIHVFFGAAILSLSIASVISGI 192
>gi|241896864 cytochrome b, ascorbate dependent 3 isoform 2 [Homo
sapiens]
Length = 242
Score = 36.6 bits (83), Expect = 0.011
Identities = 23/94 (24%), Positives = 41/94 (43%)
Query: 35 LHWAGQTLAILCAALGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQALCGLCLLCP 94
LH A +A + +GL + + +L S HSW+G T+ A Q G +
Sbjct: 82 LHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFLL 141
Query: 95 RAARVSRVARLKLYHLTCGLVVYLMATVTVLLGM 128
A + + LK H+ G + ++ +V+ G+
Sbjct: 142 PWASMWLRSLLKPIHVFFGAAILSLSIASVISGI 175
>gi|66346670 Rhesus blood group, CcEe antigens isoform 2 [Homo
sapiens]
Length = 354
Score = 31.2 bits (69), Expect = 0.46
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Query: 4 LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 55
L C EA L+ LF+F + +K + + GQ L ++ AALGLGF+
Sbjct: 13 LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
Query: 56 SSRTRSELPHLVSWHSWVGALTLLATAVQ 84
S+ R SW S L +LA VQ
Sbjct: 67 SNFRRH------SWSSVAFNLFMLALGVQ 89
>gi|66346668 Rhesus blood group, CcEe antigens isoform 4 [Homo
sapiens]
Length = 267
Score = 31.2 bits (69), Expect = 0.46
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Query: 4 LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 55
L C EA L+ LF+F + +K + + GQ L ++ AALGLGF+
Sbjct: 13 LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
Query: 56 SSRTRSELPHLVSWHSWVGALTLLATAVQ 84
S+ R SW S L +LA VQ
Sbjct: 67 SNFRRH------SWSSVAFNLFMLALGVQ 89
>gi|66346666 Rhesus blood group, CcEe antigens isoform 3 [Homo
sapiens]
Length = 266
Score = 31.2 bits (69), Expect = 0.46
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Query: 4 LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 55
L C EA L+ LF+F + +K + + GQ L ++ AALGLGF+
Sbjct: 13 LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
Query: 56 SSRTRSELPHLVSWHSWVGALTLLATAVQ 84
S+ R SW S L +LA VQ
Sbjct: 67 SNFRRH------SWSSVAFNLFMLALGVQ 89
>gi|66346664 Rhesus blood group, CcEe antigens isoform 1 [Homo
sapiens]
Length = 417
Score = 31.2 bits (69), Expect = 0.46
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Query: 4 LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 55
L C EA L+ LF+F + +K + + GQ L ++ AALGLGF+
Sbjct: 13 LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
Query: 56 SSRTRSELPHLVSWHSWVGALTLLATAVQ 84
S+ R SW S L +LA VQ
Sbjct: 67 SNFRRH------SWSSVAFNLFMLALGVQ 89
>gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens]
Length = 321
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 29 RKARIRLHWAGQTLAILCAALGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQ 84
+K + + GQ L ++ AA+GLGF+ SS R SW S L +LA VQ
Sbjct: 41 QKGLVASYQVGQDLTVM-AAIGLGFLTSSFRRH------SWSSVAFNLFMLALGVQ 89
>gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens]
Length = 417
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 29 RKARIRLHWAGQTLAILCAALGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQ 84
+K + + GQ L ++ AA+GLGF+ SS R SW S L +LA VQ
Sbjct: 41 QKGLVASYQVGQDLTVM-AAIGLGFLTSSFRRH------SWSSVAFNLFMLALGVQ 89
>gi|52627164 olfactory receptor, family 6, subfamily F, member 1
[Homo sapiens]
Length = 308
Score = 28.5 bits (62), Expect = 3.0
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 2 QPLEFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRS 61
Q + F C+ + +FS + +F + A R LAI C L G I+SS +
Sbjct: 90 QTISFTSCLLQMYFVFSLGCTEYFLLAAMAYDRC------LAI-CYPLHYGAIMSSLLSA 142
Query: 62 ELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRA 96
+L + SWV +A + GL PRA
Sbjct: 143 QL----ALGSWVCGFVAIAVPTALISGLSFCGPRA 173
>gi|223468600 leishmanolysin-like isoform 1 [Homo sapiens]
Length = 692
Score = 27.7 bits (60), Expect = 5.1
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 27 CSRKARIRLHWAGQTLAILCAALGLGFIIS------SRTRSELPHLVSWHSWVGALTLLA 80
C RK W + C+ GL + SR LP + + W+ LL
Sbjct: 574 CERKLSYP-DWGSGCYQVSCSPQGLKVWVQDTSYLCSRAGQVLPVSIQMNGWIHDGNLLC 632
Query: 81 TAVQALCGLC--LLCPRAARVSRVARLKLYHLTCGLVVYLMATVTVLLG 127
+ C LC P A ++R L L + LVV T+ +LLG
Sbjct: 633 PSCWDFCELCPPETDPPATNLTRALPLDLCSCSSSLVV----TLWLLLG 677
>gi|110556638 leishmanolysin-like isoform 2 [Homo sapiens]
Length = 655
Score = 27.7 bits (60), Expect = 5.1
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 27 CSRKARIRLHWAGQTLAILCAALGLGFIIS------SRTRSELPHLVSWHSWVGALTLLA 80
C RK W + C+ GL + SR LP + + W+ LL
Sbjct: 537 CERKLSYP-DWGSGCYQVSCSPQGLKVWVQDTSYLCSRAGQVLPVSIQMNGWIHDGNLLC 595
Query: 81 TAVQALCGLC--LLCPRAARVSRVARLKLYHLTCGLVVYLMATVTVLLG 127
+ C LC P A ++R L L + LVV T+ +LLG
Sbjct: 596 PSCWDFCELCPPETDPPATNLTRALPLDLCSCSSSLVV----TLWLLLG 640
>gi|239755457 PREDICTED: similar to patatin-like phospholipase
domain containing 2 [Homo sapiens]
Length = 226
Score = 27.7 bits (60), Expect = 5.1
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 46 CAALGLGFI-ISSRTRSELPHLVSWHSWV-GALTLLATAVQALCGLCLLCPRAAR 98
C LG+ ++ ++S R P LV+ + + GA TA + G+CL+ RAAR
Sbjct: 15 CGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGVCLVPERAAR 69
>gi|189571657 glycerophosphodiester phosphodiesterase domain
containing 5 [Homo sapiens]
Length = 605
Score = 27.3 bits (59), Expect = 6.7
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 69 WHSW-VGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVTVLLG 127
W W V L A A + GL +L V + L H GLVV L +TV +
Sbjct: 83 WSDWPVPILVTTAAAFAYIAGLLVLALCHIAVGQQMNLHWLH-KIGLVVILASTVVAMSA 141
Query: 128 MYSVW 132
+ +W
Sbjct: 142 VAQLW 146
>gi|27477074 interleukin 17B receptor precursor [Homo sapiens]
Length = 502
Score = 26.9 bits (58), Expect = 8.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 114 LVVYLMATVTVLLGMYSVWFQAQIKGAAWYLCLALP------VYPALVIMH 158
L+ L+AT ++ G+Y +W +IK ++ LP VYP+ + H
Sbjct: 295 LLSLLVATWVLVAGIYLMWRHERIKKTSFSTTTLLPPIKVLVVYPSEICFH 345
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.333 0.140 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,074,366
Number of Sequences: 37866
Number of extensions: 217089
Number of successful extensions: 840
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 23
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.