Guide to the Human Genome
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Name: GDPD5 Sequence: fasta or formatted (605aa) NCBI GI: 189571657
Description:

glycerophosphodiester phosphodiesterase domain containing 5

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         46           3
 C cysteine            1.7         10           1
 D aspartate           3.6         22           2
 E glutamate           4.6         28           3
 F phenylalanine       3.8         23           2
 G glycine             5.1         31           3
 H histidine           2.8         17           1
 I isoleucine          4.3         26           1
 K lysine              2.5         15           2
 L leucine            13.1         79           3
 M methionine          2.5         15           1
 N asparagine          3.1         19           1
 P proline             5.5         33           2
 Q glutamine           4.5         27           2
 R arginine            6.0         36           2
 S serine              8.3         50           2
 T threonine           6.8         41           2
 V valine              7.3         44           2
 W tryptophan          3.8         23           2
 Y tyrosine            3.3         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycerophosphodiester phosphodiesterase domain cont... 
GDPD2                 0.339   osteoblast differentiation promoting factor protein ...
GDPD4                 0.276   glycerophosphodiester phosphodiesterase domain conta...
GDE1                  0.024   glycerophosphodiester phosphodiesterase 1 
RP5-1022P6.2          0.007   hypothetical protein LOC56261 
PLXNA2                0.007   plexin A2 
GDPD1                 0.006   glycerophosphodiester phosphodiesterase domain conta...
CHSY3                 0.006   chondroitin sulfate synthase 3 
LASS3                 0.005   LAG1 longevity assurance homolog 3 
OR13A1                0.005   olfactory receptor, family 13, subfamily A, member ...
TMEM184C              0.004   transmembrane protein 184C 
OR1N1                 0.004   olfactory receptor, family 1, subfamily N, member 1 ...
TMEM161A              0.004   transmembrane protein 161A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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