Search of human proteins with 197276661

Search of human proteins with 197276661

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|197276661 paired box 1 [Homo sapiens]
         (534 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|197276661 paired box 1 [Homo sapiens]                             1107   0.0  
gi|7242167 paired box 9 [Homo sapiens]                                402   e-112
gi|34878716 paired box protein 2 isoform d [Homo sapiens]             203   4e-52
gi|34878709 paired box protein 2 isoform c [Homo sapiens]             203   4e-52
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                203   4e-52
gi|9951920 paired box 5 [Homo sapiens]                                203   4e-52
gi|34878701 paired box protein 2 isoform b [Homo sapiens]             202   5e-52
gi|34878699 paired box protein 2 isoform a [Homo sapiens]             202   6e-52
gi|34878703 paired box protein 2 isoform e [Homo sapiens]             202   6e-52
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                 198   9e-51
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                 198   9e-51
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                 198   9e-51
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                 198   9e-51
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                  198   9e-51
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]                  197   2e-50
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]                  197   2e-50
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]                  194   1e-49
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]                  194   1e-49
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]                  194   1e-49
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]                  194   1e-49
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]                  194   1e-49
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                      193   4e-49
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                      188   1e-47
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                    188   1e-47
gi|189083681 paired box gene 6 isoform a [Homo sapiens]               182   5e-46
gi|4505615 paired box gene 6 isoform a [Homo sapiens]                 182   5e-46
gi|4580424 paired box gene 6 isoform b [Homo sapiens]                 173   4e-43
gi|170784824 paired box 4 [Homo sapiens]                              144   2e-34
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         55   2e-07
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    51   2e-06

>gi|197276661 paired box 1 [Homo sapiens]
          Length = 534

 Score = 1107 bits (2863), Expect = 0.0
 Identities = 534/534 (100%), Positives = 534/534 (100%)

Query: 1   MKFTLGLGSRAWRVSWEGAAAAAAGPGAGGSALRCRAQRVSSPRLGRRGSRLSGALPLCL 60
           MKFTLGLGSRAWRVSWEGAAAAAAGPGAGGSALRCRAQRVSSPRLGRRGSRLSGALPLCL
Sbjct: 1   MKFTLGLGSRAWRVSWEGAAAAAAGPGAGGSALRCRAQRVSSPRLGRRGSRLSGALPLCL 60

Query: 61  SRGGGGAQALPDCAGPSPGHPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIR 120
           SRGGGGAQALPDCAGPSPGHPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIR
Sbjct: 61  SRGGGGAQALPDCAGPSPGHPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIR 120

Query: 121 LRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKH 180
           LRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKH
Sbjct: 121 LRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKH 180

Query: 181 IRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASKQP 240
           IRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASKQP
Sbjct: 181 IRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASKQP 240

Query: 241 PSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPGTAGHVSIPRSWPSAHSVSNILGIRT 300
           PSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPGTAGHVSIPRSWPSAHSVSNILGIRT
Sbjct: 241 PSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPGTAGHVSIPRSWPSAHSVSNILGIRT 300

Query: 301 FMEQTGALAGSEGTAYSPKMEDWAGVNRTAFPATPAVNGLEKPALEADIKYTQSASTLSA 360
           FMEQTGALAGSEGTAYSPKMEDWAGVNRTAFPATPAVNGLEKPALEADIKYTQSASTLSA
Sbjct: 301 FMEQTGALAGSEGTAYSPKMEDWAGVNRTAFPATPAVNGLEKPALEADIKYTQSASTLSA 360

Query: 361 VGGFLPACAYPASNQHGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMT 420
           VGGFLPACAYPASNQHGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMT
Sbjct: 361 VGGFLPACAYPASNQHGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMT 420

Query: 421 FKHPSREGSLPAPAARPRTPSVAYTDCPSRPRPPRGSSPRTRARRERQADPGAQVCAAAP 480
           FKHPSREGSLPAPAARPRTPSVAYTDCPSRPRPPRGSSPRTRARRERQADPGAQVCAAAP
Sbjct: 421 FKHPSREGSLPAPAARPRTPSVAYTDCPSRPRPPRGSSPRTRARRERQADPGAQVCAAAP 480

Query: 481 AIGTGRIGGLAEEEASAGPRGARPASPQAQPCLWPDPPHFLYWSGFLGFSELGF 534
           AIGTGRIGGLAEEEASAGPRGARPASPQAQPCLWPDPPHFLYWSGFLGFSELGF
Sbjct: 481 AIGTGRIGGLAEEEASAGPRGARPASPQAQPCLWPDPPHFLYWSGFLGFSELGF 534


>gi|7242167 paired box 9 [Homo sapiens]
          Length = 341

 Score =  402 bits (1033), Expect = e-112
 Identities = 222/348 (63%), Positives = 257/348 (73%), Gaps = 28/348 (8%)

Query: 95  MEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 154
           ME  +GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY
Sbjct: 1   MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 60

Query: 155 NETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSV 214
           NETGSILPGAIGGSKPRVTTP VVKHIR YKQ DPGIFAWEIRDRLLADGVCDKYNVPSV
Sbjct: 61  NETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSV 120

Query: 215 SSISRILRNKIGSLAQPGPYEASK--QPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPG 272
           SSISRILRNKIG+LAQ G Y++ K  QP  QP LPYNHIY   YPSP++   AK+ + PG
Sbjct: 121 SSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYS--YPSPITAAAAKVPTPPG 178

Query: 273 VPGTAGHVSIPRSWPSAHSVSNILGIRTFMEQTGALAGSEGTAY-SPKMEDWAGVNRTAF 331
           VP   G V++PR+WPS+HSV++ILGIR+  +Q      S+ + Y SPK+E+W+ + R  F
Sbjct: 179 VPAIPGSVAMPRTWPSSHSVTDILGIRSITDQV-----SDSSPYHSPKVEEWSSLGRNNF 233

Query: 332 PATP--AVNGLEKPALEADIKYTQSASTLSAVGGFLPACA---YPASNQ---HGVYSAPG 383
           PA    AVNGLEK ALE + KY Q+ + L AVG F+ A +   YP   Q   +  YSA  
Sbjct: 234 PAAAPHAVNGLEKGALEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPAQVSPYMTYSAAP 293

Query: 384 GGYLAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMTFK--HPSREGS 429
            GY+A G  W  A G  L+P       H  ++ A++ FK    +REGS
Sbjct: 294 SGYVA-GHGWQHAGGTSLSP-------HNCDIPASLAFKGMQAAREGS 333


>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
          Length = 408

 Score =  203 bits (516), Expect = 4e-52
 Identities = 156/408 (38%), Positives = 194/408 (47%), Gaps = 59/408 (14%)

Query: 94  AMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 153
           AM   +G VNQLGGVFVNGRPLP+ +R RIVELA  G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 12  AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71

Query: 154 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 213
           Y ETGSI PG IGGSKP+V TP VV  I +YK+ +P +FAWEIRDRLLA+G+CD   VPS
Sbjct: 72  YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131

Query: 214 VSSISRILRNKIGSLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHP-G 272
           VSSI+RI+R K+     P P  A     +  T P + I     PS  SP  +   + P G
Sbjct: 132 VSSINRIIRTKVQQPFHPTPDGAG----TGVTAPGHTI----VPSTASPPVSSASNDPVG 183

Query: 273 VPGTAGHVSIPR---------------SWPSAHSVSNILGIR------TFMEQTGALAGS 311
                G + IPR               S P+  S S +  +R      TF +Q   L   
Sbjct: 184 SYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQ--QLEAL 241

Query: 312 EGTAYSPKMEDWAGVNRTAFPATPAV-----NGLEKPALEA---DIKYTQSASTLSAVGG 363
           +     P   D        F A+  +     N    PAL     ++K + SAST   +G 
Sbjct: 242 DRVFERPSYPD-------VFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGS 294

Query: 364 FLPAC-AYPASNQHGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMTFK 422
            +     YP      + S    GY    PP  P  G    P      +  G   +   + 
Sbjct: 295 NVSGTQTYPVVTGRDMASTTLPGY----PPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYS 350

Query: 423 HPSREG-------SLPAPAARPRTPSVAYTDCPSRPRPPRGSSPRTRA 463
           HP           S PA    P  P +     P      RG   + +A
Sbjct: 351 HPQYTAYNEAWRFSNPALLMPPPGPPLPLLPLPMTATSYRGDHIKLQA 398


>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
          Length = 396

 Score =  203 bits (516), Expect = 4e-52
 Identities = 155/401 (38%), Positives = 196/401 (48%), Gaps = 57/401 (14%)

Query: 94  AMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 153
           AM   +G VNQLGGVFVNGRPLP+ +R RIVELA  G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 12  AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71

Query: 154 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 213
           Y ETGSI PG IGGSKP+V TP VV  I +YK+ +P +FAWEIRDRLLA+G+CD   VPS
Sbjct: 72  YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131

Query: 214 VSSISRILRNKIGSLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHP-G 272
           VSSI+RI+R K+     P P  A     +  T P + I     PS  SP  +   + P G
Sbjct: 132 VSSINRIIRTKVQQPFHPTPDGAG----TGVTAPGHTI----VPSTASPPVSSASNDPVG 183

Query: 273 VPGTAGHVSIPR---------------SWPSAHSVSNILGIR------TFMEQTGALAGS 311
                G + IPR               S P+  S S +  +R      TF +Q   L   
Sbjct: 184 SYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQ--QLEAL 241

Query: 312 EGTAYSPKMEDWAGVNRTAFPATPAV-----NGLEKPALEA---DIKYTQSASTLSAVGG 363
           +     P   D        F A+  +     N    PAL     ++K + SAST   +G 
Sbjct: 242 DRVFERPSYPD-------VFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGS 294

Query: 364 FLPAC-AYPASNQHGVYSAPGGGYLAPGPPWPPAQGPPLAPPG--AGVAVHGGELAAAMT 420
            +     YP      + S    GY    PP  P  G    P    AG+        ++  
Sbjct: 295 NVSGTQTYPVVTGRDMASTTLPGY----PPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSL 350

Query: 421 FKHPSREGSLPAPAARP---RTPSVAYTDCPSRPRPPRGSS 458
              P R+ +   P  +P    +P+       +RP    G S
Sbjct: 351 MSKPGRKLAEVPPCVQPTGASSPATRTATPSTRPTTRLGDS 391


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score =  203 bits (516), Expect = 4e-52
 Identities = 114/213 (53%), Positives = 141/213 (66%), Gaps = 9/213 (4%)

Query: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDY 184
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+VTTP+V K I +Y
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEY 120

Query: 185 KQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG-SLAQPGPYEASKQPPSQ 243
           K+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G    +    E  +   S+
Sbjct: 121 KRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESE 180

Query: 244 PTLPY--NHIYQYPYPSPVSPTGAKMGSHPGVP 274
               +  + I      +P S  G+ + S P +P
Sbjct: 181 KKAKHSIDGILSERASAPQSDEGSDIDSEPDLP 213


>gi|9951920 paired box 5 [Homo sapiens]
          Length = 391

 Score =  203 bits (516), Expect = 4e-52
 Identities = 116/227 (51%), Positives = 140/227 (61%), Gaps = 29/227 (12%)

Query: 92  PLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKIL 151
           P      +G VNQLGGVFVNGRPLP+ +R RIVELA  G+RPCDISRQLRVSHGCVSKIL
Sbjct: 10  PRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 69

Query: 152 ARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNV 211
            RY ETGSI PG IGGSKP+V TP VV+ I +YK+ +P +FAWEIRDRLLA+ VCD   V
Sbjct: 70  GRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTV 129

Query: 212 PSVSSISRILRNKIGSLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHP 271
           PSVSSI+RI+R K+            +QPP+QP    +H         +  TG+      
Sbjct: 130 PSVSSINRIIRTKV------------QQPPNQPVPASSH--------SIVSTGSVTQVSS 169

Query: 272 GVPGTAGHVSIPRSWPSAHSVSNILGIRTFMEQTGALAGSEGTAYSP 318
               +AG         S++S+S ILGI +    T      EG   SP
Sbjct: 170 VSTDSAG---------SSYSISGILGITSPSADTNKRKRDEGIQESP 207


>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
          Length = 393

 Score =  202 bits (515), Expect = 5e-52
 Identities = 147/362 (40%), Positives = 182/362 (50%), Gaps = 52/362 (14%)

Query: 94  AMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 153
           AM   +G VNQLGGVFVNGRPLP+ +R RIVELA  G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 12  AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71

Query: 154 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 213
           Y ETGSI PG IGGSKP+V TP VV  I +YK+ +P +FAWEIRDRLLA+G+CD   VPS
Sbjct: 72  YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131

Query: 214 VSSISRILRNKIGSLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHP-G 272
           VSSI+RI+R K+     P P  A     +  T P + I     PS  SP  +   + P G
Sbjct: 132 VSSINRIIRTKVQQPFHPTPDGAG----TGVTAPGHTI----VPSTASPPVSSASNDPVG 183

Query: 273 VPGTAGHVSIPR---------------SWPSAHSVSNILGIR------TFMEQTGALAGS 311
                G + IPR               S P+  S S +  +R      TF +Q   L   
Sbjct: 184 SYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQ--QLEAL 241

Query: 312 EGTAYSPKMEDWAGVNRTAFPATPAV-----NGLEKPALEA---DIKYTQSASTLSAVGG 363
           +     P   D        F A+  +     N    PAL     ++K + SAST   +G 
Sbjct: 242 DRVFERPSYPD-------VFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGS 294

Query: 364 FLPAC-AYPASNQHGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMTFK 422
            +     YP      + S    GY    PP  P  G    P      +  G   +   + 
Sbjct: 295 NVSGTQTYPVVTGRDMASTTLPGY----PPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYS 350

Query: 423 HP 424
           HP
Sbjct: 351 HP 352


>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
          Length = 416

 Score =  202 bits (514), Expect = 6e-52
 Identities = 112/193 (58%), Positives = 131/193 (67%), Gaps = 9/193 (4%)

Query: 94  AMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 153
           AM   +G VNQLGGVFVNGRPLP+ +R RIVELA  G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 12  AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71

Query: 154 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 213
           Y ETGSI PG IGGSKP+V TP VV  I +YK+ +P +FAWEIRDRLLA+G+CD   VPS
Sbjct: 72  YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131

Query: 214 VSSISRILRNKIGSLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHP-G 272
           VSSI+RI+R K+     P P  A     +  T P + I     PS  SP  +   + P G
Sbjct: 132 VSSINRIIRTKVQQPFHPTPDGAG----TGVTAPGHTI----VPSTASPPVSSASNDPVG 183

Query: 273 VPGTAGHVSIPRS 285
                G + IPRS
Sbjct: 184 SYSINGILGIPRS 196


>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
          Length = 431

 Score =  202 bits (514), Expect = 6e-52
 Identities = 112/193 (58%), Positives = 131/193 (67%), Gaps = 9/193 (4%)

Query: 94  AMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 153
           AM   +G VNQLGGVFVNGRPLP+ +R RIVELA  G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 12  AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71

Query: 154 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 213
           Y ETGSI PG IGGSKP+V TP VV  I +YK+ +P +FAWEIRDRLLA+G+CD   VPS
Sbjct: 72  YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131

Query: 214 VSSISRILRNKIGSLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHP-G 272
           VSSI+RI+R K+     P P  A     +  T P + I     PS  SP  +   + P G
Sbjct: 132 VSSINRIIRTKVQQPFHPTPDGAG----TGVTAPGHTI----VPSTASPPVSSASNDPVG 183

Query: 273 VPGTAGHVSIPRS 285
                G + IPRS
Sbjct: 184 SYSINGILGIPRS 196


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score =  198 bits (504), Expect = 9e-51
 Identities = 114/214 (53%), Positives = 141/214 (65%), Gaps = 10/214 (4%)

Query: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRD 183
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+ VTTP+V K I +
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 184 YKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG-SLAQPGPYEASKQPPS 242
           YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G    +    E  +   S
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 243 QPTLPY--NHIYQYPYPSPVSPTGAKMGSHPGVP 274
           +    +  + I      +P S  G+ + S P +P
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLP 214


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score =  198 bits (504), Expect = 9e-51
 Identities = 114/214 (53%), Positives = 141/214 (65%), Gaps = 10/214 (4%)

Query: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRD 183
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+ VTTP+V K I +
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 184 YKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG-SLAQPGPYEASKQPPS 242
           YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G    +    E  +   S
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 243 QPTLPY--NHIYQYPYPSPVSPTGAKMGSHPGVP 274
           +    +  + I      +P S  G+ + S P +P
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLP 214


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score =  198 bits (504), Expect = 9e-51
 Identities = 114/214 (53%), Positives = 141/214 (65%), Gaps = 10/214 (4%)

Query: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRD 183
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+ VTTP+V K I +
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 184 YKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG-SLAQPGPYEASKQPPS 242
           YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G    +    E  +   S
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 243 QPTLPY--NHIYQYPYPSPVSPTGAKMGSHPGVP 274
           +    +  + I      +P S  G+ + S P +P
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLP 214


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score =  198 bits (504), Expect = 9e-51
 Identities = 114/214 (53%), Positives = 141/214 (65%), Gaps = 10/214 (4%)

Query: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRD 183
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+ VTTP+V K I +
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 184 YKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG-SLAQPGPYEASKQPPS 242
           YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G    +    E  +   S
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 243 QPTLPY--NHIYQYPYPSPVSPTGAKMGSHPGVP 274
           +    +  + I      +P S  G+ + S P +P
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLP 214


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score =  198 bits (504), Expect = 9e-51
 Identities = 114/214 (53%), Positives = 141/214 (65%), Gaps = 10/214 (4%)

Query: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRD 183
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+ VTTP+V K I +
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 184 YKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG-SLAQPGPYEASKQPPS 242
           YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G    +    E  +   S
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 243 QPTLPY--NHIYQYPYPSPVSPTGAKMGSHPGVP 274
           +    +  + I      +P S  G+ + S P +P
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLP 214


>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
          Length = 206

 Score =  197 bits (501), Expect = 2e-50
 Identities = 105/163 (64%), Positives = 123/163 (75%), Gaps = 7/163 (4%)

Query: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRD 183
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+ VTTP+V K I +
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 184 YKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG 226
           YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFG 163


>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
          Length = 215

 Score =  197 bits (501), Expect = 2e-50
 Identities = 105/163 (64%), Positives = 123/163 (75%), Gaps = 7/163 (4%)

Query: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRD 183
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+ VTTP+V K I +
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 184 YKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG 226
           YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFG 163


>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
          Length = 321

 Score =  194 bits (494), Expect = 1e-49
 Identities = 102/183 (55%), Positives = 122/183 (66%), Gaps = 8/183 (4%)

Query: 99  YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 158
           +G +NQLGG FVNGRPLP  +R RIV+LA  G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 10  HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 69

Query: 159 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 218
           SI PG IGGSKP+V TP VV+ I DYK+ +P +FAWEIRDRLLA+GVCD   VPSVSSI+
Sbjct: 70  SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 129

Query: 219 RILRNKIG---SLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPG 275
           RI+R K+    +L            P    +P + +       P SP    +GS   + G
Sbjct: 130 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAV-----TPPESPQSDSLGSTYSING 184

Query: 276 TAG 278
             G
Sbjct: 185 LLG 187


>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
          Length = 287

 Score =  194 bits (494), Expect = 1e-49
 Identities = 102/183 (55%), Positives = 122/183 (66%), Gaps = 8/183 (4%)

Query: 99  YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 158
           +G +NQLGG FVNGRPLP  +R RIV+LA  G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 10  HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 69

Query: 159 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 218
           SI PG IGGSKP+V TP VV+ I DYK+ +P +FAWEIRDRLLA+GVCD   VPSVSSI+
Sbjct: 70  SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 129

Query: 219 RILRNKIG---SLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPG 275
           RI+R K+    +L            P    +P + +       P SP    +GS   + G
Sbjct: 130 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAV-----TPPESPQSDSLGSTYSING 184

Query: 276 TAG 278
             G
Sbjct: 185 LLG 187


>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
          Length = 398

 Score =  194 bits (494), Expect = 1e-49
 Identities = 102/183 (55%), Positives = 122/183 (66%), Gaps = 8/183 (4%)

Query: 99  YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 158
           +G +NQLGG FVNGRPLP  +R RIV+LA  G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 10  HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 69

Query: 159 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 218
           SI PG IGGSKP+V TP VV+ I DYK+ +P +FAWEIRDRLLA+GVCD   VPSVSSI+
Sbjct: 70  SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 129

Query: 219 RILRNKIG---SLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPG 275
           RI+R K+    +L            P    +P + +       P SP    +GS   + G
Sbjct: 130 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAV-----TPPESPQSDSLGSTYSING 184

Query: 276 TAG 278
             G
Sbjct: 185 LLG 187


>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
          Length = 387

 Score =  194 bits (494), Expect = 1e-49
 Identities = 102/183 (55%), Positives = 122/183 (66%), Gaps = 8/183 (4%)

Query: 99  YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 158
           +G +NQLGG FVNGRPLP  +R RIV+LA  G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 10  HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 69

Query: 159 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 218
           SI PG IGGSKP+V TP VV+ I DYK+ +P +FAWEIRDRLLA+GVCD   VPSVSSI+
Sbjct: 70  SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 129

Query: 219 RILRNKIG---SLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPG 275
           RI+R K+    +L            P    +P + +       P SP    +GS   + G
Sbjct: 130 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAV-----TPPESPQSDSLGSTYSING 184

Query: 276 TAG 278
             G
Sbjct: 185 LLG 187


>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
          Length = 450

 Score =  194 bits (494), Expect = 1e-49
 Identities = 102/183 (55%), Positives = 122/183 (66%), Gaps = 8/183 (4%)

Query: 99  YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 158
           +G +NQLGG FVNGRPLP  +R RIV+LA  G+RPCDISRQLRVSHGCVSKIL RY ETG
Sbjct: 10  HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 69

Query: 159 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 218
           SI PG IGGSKP+V TP VV+ I DYK+ +P +FAWEIRDRLLA+GVCD   VPSVSSI+
Sbjct: 70  SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 129

Query: 219 RILRNKIG---SLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPG 275
           RI+R K+    +L            P    +P + +       P SP    +GS   + G
Sbjct: 130 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAV-----TPPESPQSDSLGSTYSING 184

Query: 276 TAG 278
             G
Sbjct: 185 LLG 187


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score =  193 bits (490), Expect = 4e-49
 Identities = 103/160 (64%), Positives = 120/160 (75%), Gaps = 7/160 (4%)

Query: 70  LPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELA 127
           +P    P+PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IVE+A
Sbjct: 8   VPRMMRPAPGQNYPRTGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIVEMA 63

Query: 128 QLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRDYKQ 186
             GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKPR V TP+V K I +YK+
Sbjct: 64  HHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKR 123

Query: 187 GDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG 226
            +PG+F+WEIRDRLL DG CD+  VPSVSSISR+LR K G
Sbjct: 124 ENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRVLRIKFG 163


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score =  188 bits (477), Expect = 1e-47
 Identities = 103/162 (63%), Positives = 120/162 (74%), Gaps = 9/162 (5%)

Query: 70  LPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELA 127
           +P    P+PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IVE+A
Sbjct: 8   VPRMMRPAPGQNYPRTGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIVEMA 63

Query: 128 QLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRDYKQ 186
             GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKPR V TP+V K I +YK+
Sbjct: 64  HHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKR 123

Query: 187 GDPGIFAWEIRDRLLADGVCDKYNVPS--VSSISRILRNKIG 226
            +PG+F+WEIRDRLL DG CD+  VPS  VSSISR+LR K G
Sbjct: 124 ENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIKFG 165


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score =  188 bits (477), Expect = 1e-47
 Identities = 103/162 (63%), Positives = 120/162 (74%), Gaps = 9/162 (5%)

Query: 70  LPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELA 127
           +P    P+PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IVE+A
Sbjct: 8   VPRMMRPAPGQNYPRTGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIVEMA 63

Query: 128 QLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRDYKQ 186
             GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKPR V TP+V K I +YK+
Sbjct: 64  HHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKR 123

Query: 187 GDPGIFAWEIRDRLLADGVCDKYNVPS--VSSISRILRNKIG 226
            +PG+F+WEIRDRLL DG CD+  VPS  VSSISR+LR K G
Sbjct: 124 ENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIKFG 165


>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  182 bits (463), Expect = 5e-46
 Identities = 92/138 (66%), Positives = 106/138 (76%)

Query: 95  MEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 154
           M+ ++  VNQLGGVFVNGRPLP++ R +IVELA  G RPCDISR L+VS+GCVSKIL RY
Sbjct: 1   MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60

Query: 155 NETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSV 214
            ETGSI P AIGGSKPRV TP VV  I  YK+  P IFAWEIRDRLL++GVC   N+PSV
Sbjct: 61  YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120

Query: 215 SSISRILRNKIGSLAQPG 232
           SSI+R+LRN      Q G
Sbjct: 121 SSINRVLRNLASEKQQMG 138


>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  182 bits (463), Expect = 5e-46
 Identities = 92/138 (66%), Positives = 106/138 (76%)

Query: 95  MEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 154
           M+ ++  VNQLGGVFVNGRPLP++ R +IVELA  G RPCDISR L+VS+GCVSKIL RY
Sbjct: 1   MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60

Query: 155 NETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSV 214
            ETGSI P AIGGSKPRV TP VV  I  YK+  P IFAWEIRDRLL++GVC   N+PSV
Sbjct: 61  YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120

Query: 215 SSISRILRNKIGSLAQPG 232
           SSI+R+LRN      Q G
Sbjct: 121 SSINRVLRNLASEKQQMG 138


>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
          Length = 436

 Score =  173 bits (438), Expect = 4e-43
 Identities = 92/152 (60%), Positives = 106/152 (69%), Gaps = 14/152 (9%)

Query: 95  MEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLR------------- 141
           M+ ++  VNQLGGVFVNGRPLP++ R +IVELA  G RPCDISR L+             
Sbjct: 1   MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60

Query: 142 -VSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRL 200
            VS+GCVSKIL RY ETGSI P AIGGSKPRV TP VV  I  YK+  P IFAWEIRDRL
Sbjct: 61  NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120

Query: 201 LADGVCDKYNVPSVSSISRILRNKIGSLAQPG 232
           L++GVC   N+PSVSSI+R+LRN      Q G
Sbjct: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMG 152


>gi|170784824 paired box 4 [Homo sapiens]
          Length = 343

 Score =  144 bits (363), Expect = 2e-34
 Identities = 73/121 (60%), Positives = 89/121 (73%)

Query: 102 VNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSIL 161
           +NQLGG+FVNGRPLP   R +IV LA  G+RPCDISR L+VS+GCVSKIL RY  TG + 
Sbjct: 1   MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60

Query: 162 PGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 221
           P  IGGSKPR+ TP VV  I   K   P +FAWEI+ +L A+G+C +   PSVSSI+R+L
Sbjct: 61  PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120

Query: 222 R 222
           R
Sbjct: 121 R 121


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 81/330 (24%), Positives = 109/330 (33%), Gaps = 65/330 (19%)

Query: 232 GPYEASKQPPSQPTLPYNHIYQYPYPSP---VSPTGAKM------GSHPGVPGTAGHVSI 282
           GP      PP +    ++  + YPYP+P     P G ++      G  P  PG   H  +
Sbjct: 291 GPERKGSAPPERQEQRHSLPHPYPYPAPAYTAHPPGHRLVPAAPPGPGPRPPGAESHGCL 350

Query: 283 PRSWPSAHSVSNILGIRTFMEQTGALA--------------GSEGTAYSPKMEDWAGVNR 328
           P + P    +      R+ M+ + + A              G  GT  S      +    
Sbjct: 351 PATRPPGSDLRESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTTTSSSSSSSSNTGL 410

Query: 329 TAF---PATPAVNGLEKPALEADIKYTQSASTLSAVGGFLPACAYPASNQHGVYSAPGGG 385
                 P  P  +  + PALE         S  S+   FL A   PA+  H   S P G 
Sbjct: 411 RGVEPNPGIPGADHYQTPALEVSHHGRLGPSAHSSRKPFLGA---PAATPH--LSLPPGP 465

Query: 386 YLAPGPPWPPAQGPPLAP-----PGAGVAVHGGELAAAMTF-----------KHPSREGS 429
              P PP P    PP  P     P    A   GE+   + F             P REG 
Sbjct: 466 SSPPPPPCPRLLRPPPPPAWLKGPACRAAREDGEILEELFFGTEGPPRPAPPPLPHREGF 525

Query: 430 LPAPAARPRTPSVAYTDCPSRPRPPRGSSPRTRARR-ERQADPGAQVCAAAPAIGTGRIG 488
           L  PA+R    SV   D  + P PP  ++  + +      + P   V    P      I 
Sbjct: 526 LGPPASR---FSVGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFPPPPYLARSID 582

Query: 489 GLAEEEASAGPRGARPASPQAQPCLWPDPP 518
            L            RP SP   P    DPP
Sbjct: 583 PL-----------PRPPSPAQNP---QDPP 598



 Score = 32.7 bits (73), Expect = 0.85
 Identities = 44/183 (24%), Positives = 65/183 (35%), Gaps = 12/183 (6%)

Query: 331 FPATPAVNGLEKPALEADIKYTQSASTLSAVGGFLPACAYPASNQHGVYSAPG--GGYLA 388
           FP TP  +  E+PA E  I     A+ +  +   +        ++ GV   P     + +
Sbjct: 673 FPPTPLEDQFEEPA-EFKILPDGLANIMKMLDESIRKEEEQQQHEAGVAPQPPLKEPFAS 731

Query: 389 PGPPWPPAQGPPLAPPGAGVAVHGGELAAAMTFKHPSREGSLPAPAARPRTPSVAYTDCP 448
              P+P    P    P   V           T    ++E     P A P  P +A    P
Sbjct: 732 LQSPFPTDTAPTTTAPAVAVTT----TTTTTTTTTATQEEEKKPPPALPPPPPLAKFPPP 787

Query: 449 SRPRPPRGSSPRTRARRERQAD--PGAQVC--AAAPAIGTGRIGGLAEEEASAGPRGARP 504
           S+P+PP    P   +  +  A    G + C      A+ T R G L   + S GP     
Sbjct: 788 SQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVST-RPGPLPTTQYSPGPPSGAT 846

Query: 505 ASP 507
           A P
Sbjct: 847 ALP 849



 Score = 30.8 bits (68), Expect = 3.2
 Identities = 34/118 (28%), Positives = 38/118 (32%), Gaps = 39/118 (33%)

Query: 387 LAPGPPWPPAQGPP-----------LAPPGAGVAVHGGELAAAMTFKHPSREGSLPAPAA 435
           L P PP PP   PP           L  PG    +HG           P R+GS P    
Sbjct: 251 LPPPPPPPPPPPPPLPGLATSPPFQLTKPGLWSTLHGDAWG-------PERKGSAPPERQ 303

Query: 436 RPR--------TPSVAYTDCPSR----PRPPRGSSPRTRARRERQADPGAQVCAAAPA 481
             R         P+ AYT  P      P  P G  PR          PGA+     PA
Sbjct: 304 EQRHSLPHPYPYPAPAYTAHPPGHRLVPAAPPGPGPR---------PPGAESHGCLPA 352


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 51/188 (27%), Positives = 66/188 (35%), Gaps = 15/188 (7%)

Query: 344 ALEADIKYTQSASTLSAVGGFLPACAYPASNQHGVYSAPGGGYLAPGP---PWPPAQGPP 400
           A EA  +   SA       G  P    PA  +    +    G   P P   P PP +GP 
Sbjct: 138 ATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPR 197

Query: 401 LAPPGAGVAVHGGELAAAMTFKHPSREGSLPAPAARPRTPSVAYTDCPSRPRPPRGSSPR 460
            +   A  + H     +    + PS  G L  PA+R  + S      P+R  P    +PR
Sbjct: 198 KSVSSA--SEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPR 255

Query: 461 TRARRERQADPGAQVCA----------AAPAIGTGRIGGLAEEEASAGPRGARPASPQAQ 510
             A   +    G Q             AAPA+G      LA    SA P  + P S Q  
Sbjct: 256 APAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTL 315

Query: 511 PCLWPDPP 518
           P     PP
Sbjct: 316 PSPPATPP 323



 Score = 38.5 bits (88), Expect = 0.016
 Identities = 38/125 (30%), Positives = 46/125 (36%), Gaps = 7/125 (5%)

Query: 387 LAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMTFKHPSREGSLPAPAARPRTPSVAYTD 446
           LAPGPP PP++ P     G  +A H    +A  T +      S P   A    P  A   
Sbjct: 568 LAPGPPPPPSRSPSSTLSGPDLAGHSS--SATSTPEELRGYDSGPEGGAAASPPPDAELA 625

Query: 447 CPSRPRPPRGSSPRTRARRERQADPGAQVCAAAPAIGTGRIGGLAEEEASAGPRGARPAS 506
                   RG +P    R      PGA +    PA G G   GL     + GP  A PA 
Sbjct: 626 ACHPAAWSRGPAPPLAFR----GAPGAPL-PWPPATGPGSADGLCTIYETEGPESATPAP 680

Query: 507 PQAQP 511
               P
Sbjct: 681 GALDP 685



 Score = 37.4 bits (85), Expect = 0.035
 Identities = 57/200 (28%), Positives = 72/200 (36%), Gaps = 34/200 (17%)

Query: 333 ATPAVNGLEKPALEADIKYTQS--ASTLSAVGGFLPA-----CAYPASNQHGVYSAPGGG 385
           A P++  L  P      + T S  + TL A   FLP+      A P         AP   
Sbjct: 308 APPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQ------APPAL 361

Query: 386 YLAP--GPPWPPAQGP--PLAPPGA----GVAVHGGELAAAMTFKHPSREGSLPAPAARP 437
            L P   PP PPA  P  PLA P       +AVH   L  A     PS    + AP + P
Sbjct: 362 ALPPLQAPPSPPASPPLSPLATPSPQAPNALAVH---LLQAPFSPPPSPP--VQAPFSPP 416

Query: 438 RTPSVAYTDCPSRPRPPRGSSPRTRARRERQADPGAQVCAAAPAIGTGRIGGLAEEEASA 497
            +P V+ +  P    PP  ++P  +      A P     A  P          A    +A
Sbjct: 417 ASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP--------QAPPPLAA 468

Query: 498 GPRGARPASPQAQPCLWPDP 517
            P       PQA P L   P
Sbjct: 469 PPLQLAKPPPQAPPALATPP 488



 Score = 37.0 bits (84), Expect = 0.045
 Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 380 SAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGGELAAAMTFKHPSREGSLPAPAARPRT 439
           +A   G L P PP  P   PP+ P    V    G +      +     G    P + PR 
Sbjct: 18  AARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRA 77

Query: 440 PSVAYTDCPSRPRPPRGSSPRTRARRERQADPGAQVCAAAPAIGTGRIGGLAEE 493
                   P+R   P  S    RA   +   PG  V +   A GT R G L ++
Sbjct: 78  G-------PTRTSRPPASGRGERAPPAKNTSPG-PVSSPGRASGTTRPGPLGQK 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,967,870
Number of Sequences: 37866
Number of extensions: 1769030
Number of successful extensions: 16601
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 943
Number of HSP's that attempted gapping in prelim test: 11414
Number of HSP's gapped (non-prelim): 5280
length of query: 534
length of database: 18,247,518
effective HSP length: 107
effective length of query: 427
effective length of database: 14,195,856
effective search space: 6061630512
effective search space used: 6061630512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.