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Search of human proteins with 196259799
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|196259799 ring finger protein 212 isoform a [Homo sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|196259799 ring finger protein 212 isoform a [Homo sapiens] 615 e-176
gi|37059810 ring finger protein 212 isoform b [Homo sapiens] 395 e-110
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 42 5e-04
gi|239048909 checkpoint with forkhead and ring finger domains is... 39 0.007
gi|239048905 checkpoint with forkhead and ring finger domains is... 39 0.007
gi|239048792 checkpoint with forkhead and ring finger domains is... 39 0.007
gi|239048907 checkpoint with forkhead and ring finger domains is... 39 0.007
gi|223633944 hypothetical protein LOC389762 [Homo sapiens] 37 0.027
gi|223671858 hypothetical protein LOC389761 [Homo sapiens] 37 0.027
gi|239048862 checkpoint with forkhead and ring finger domains is... 36 0.047
gi|148833499 midline 1 [Homo sapiens] 33 0.30
gi|4557753 midline 1 [Homo sapiens] 33 0.30
gi|15451852 midline 1 [Homo sapiens] 33 0.30
gi|4502371 breast cancer antiestrogen resistance 3 [Homo sapiens] 33 0.30
gi|48717285 hypothetical protein LOC389763 [Homo sapiens] 33 0.39
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 33 0.39
gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens] 33 0.39
gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens] 33 0.39
gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens] 33 0.39
gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens] 33 0.39
gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens] 33 0.39
gi|7662344 U-box domain containing 5 isoform a [Homo sapiens] 32 0.52
gi|31542779 tripartite motif family-like 1 [Homo sapiens] 32 0.52
gi|40806196 U-box domain containing 5 isoform b [Homo sapiens] 32 0.52
gi|223890259 midline 2 isoform 2 [Homo sapiens] 32 0.88
gi|223890257 midline 2 isoform 1 [Homo sapiens] 32 0.88
gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapi... 32 0.88
gi|67089157 promyelocytic leukemia protein isoform 2 [Homo sapiens] 32 0.88
gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens] 32 0.88
gi|67089154 promyelocytic leukemia protein isoform 8 [Homo sapiens] 32 0.88
>gi|196259799 ring finger protein 212 isoform a [Homo sapiens]
Length = 297
Score = 615 bits (1587), Expect = e-176
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA 60
MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
Sbjct: 1 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA 60
Query: 61 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ 120
DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
Sbjct: 61 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ 120
Query: 121 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI 180
SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
Sbjct: 121 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI 180
Query: 181 SMISPPQDGRMGPHLTASFCFIPWLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFS 240
SMISPPQDGRMGPHLTASFCFIPWLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFS
Sbjct: 181 SMISPPQDGRMGPHLTASFCFIPWLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFS 240
Query: 241 SGRHGELTNSKTLPIYAEVQRAVLFPFQQAEGTLDTFRTPAVSVVFPLCQFERKKSF 297
SGRHGELTNSKTLPIYAEVQRAVLFPFQQAEGTLDTFRTPAVSVVFPLCQFERKKSF
Sbjct: 241 SGRHGELTNSKTLPIYAEVQRAVLFPFQQAEGTLDTFRTPAVSVVFPLCQFERKKSF 297
>gi|37059810 ring finger protein 212 isoform b [Homo sapiens]
Length = 232
Score = 395 bits (1015), Expect = e-110
Identities = 192/193 (99%), Positives = 192/193 (99%)
Query: 1 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA 60
MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
Sbjct: 1 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA 60
Query: 61 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ 120
DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
Sbjct: 61 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ 120
Query: 121 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI 180
SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
Sbjct: 121 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI 180
Query: 181 SMISPPQDGRMGP 193
SMISPPQDGRM P
Sbjct: 181 SMISPPQDGRMAP 193
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 42.4 bits (98), Expect = 5e-04
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 15/155 (9%)
Query: 23 TNCGHVYCDACLGKGKKNE-------CLICKAPCRTVLLS------KHTDADIQAFFMSI 69
TNCGH++C CL + + C +C+ PC +L H + S
Sbjct: 27 TNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPCSEEVLGTGYICPNHQKRVCRFCEESR 86
Query: 70 DSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTA 129
LC + + + + E + L+ Y+E+++R LRK + ++++L++ + + A
Sbjct: 87 LLLCVE-CLVSPEHMSHHELTIENALSHYKERLNRRSRKLRKDIAELQRLKAQQEKKLQA 145
Query: 130 FSTIKSSVSTKP-HGCLLPPHSSAPDRLESMEVDL 163
+ P + S A +L S+ +DL
Sbjct: 146 LQQWLGQLEHMPAEAARILDISRAVTQLRSLVIDL 180
>gi|239048909 checkpoint with forkhead and ring finger domains
isoform 5 [Homo sapiens]
Length = 572
Score = 38.5 bits (88), Expect = 0.007
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 11/187 (5%)
Query: 19 CFSLTNCGHVYCDACLG--KGKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKY 76
C SL C H +C AC + + C C+ P + + + ++A+ I K
Sbjct: 222 CVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYL--IQHPDKSR 279
Query: 77 SRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSS 136
S E Q ++ + K + +L + EE + +L++ + S S + +
Sbjct: 280 SEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQC 339
Query: 137 VSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLT 196
+ PPH AP+ L +P + ++ A + P Q G H
Sbjct: 340 PEYRRQAA-QPPHCPAPEGEPGAPQALGDAP--STSVSLTTAVQDYVCPLQ----GSHAL 392
Query: 197 ASFCFIP 203
+ CF P
Sbjct: 393 CTCCFQP 399
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 38.5 bits (88), Expect = 0.007
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 11/187 (5%)
Query: 19 CFSLTNCGHVYCDACLG--KGKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKY 76
C SL C H +C AC + + C C+ P + + + ++A+ I K
Sbjct: 302 CVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYL--IQHPDKSR 359
Query: 77 SRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSS 136
S E Q ++ + K + +L + EE + +L++ + S S + +
Sbjct: 360 SEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQC 419
Query: 137 VSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLT 196
+ PPH AP+ L +P + ++ A + P Q G H
Sbjct: 420 PEYRRQAA-QPPHCPAPEGEPGAPQALGDAP--STSVSLTTAVQDYVCPLQ----GSHAL 472
Query: 197 ASFCFIP 203
+ CF P
Sbjct: 473 CTCCFQP 479
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 38.5 bits (88), Expect = 0.007
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 11/187 (5%)
Query: 19 CFSLTNCGHVYCDACLG--KGKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKY 76
C SL C H +C AC + + C C+ P + + + ++A+ I K
Sbjct: 314 CVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYL--IQHPDKSR 371
Query: 77 SRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSS 136
S E Q ++ + K + +L + EE + +L++ + S S + +
Sbjct: 372 SEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQC 431
Query: 137 VSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLT 196
+ PPH AP+ L +P + ++ A + P Q G H
Sbjct: 432 PEYRRQAA-QPPHCPAPEGEPGAPQALGDAP--STSVSLTTAVQDYVCPLQ----GSHAL 484
Query: 197 ASFCFIP 203
+ CF P
Sbjct: 485 CTCCFQP 491
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 38.5 bits (88), Expect = 0.007
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 11/187 (5%)
Query: 19 CFSLTNCGHVYCDACLG--KGKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKY 76
C SL C H +C AC + + C C+ P + + + ++A+ I K
Sbjct: 273 CVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYL--IQHPDKSR 330
Query: 77 SRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSS 136
S E Q ++ + K + +L + EE + +L++ + S S + +
Sbjct: 331 SEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQC 390
Query: 137 VSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLT 196
+ PPH AP+ L +P + ++ A + P Q G H
Sbjct: 391 PEYRRQAA-QPPHCPAPEGEPGAPQALGDAP--STSVSLTTAVQDYVCPLQ----GSHAL 443
Query: 197 ASFCFIP 203
+ CF P
Sbjct: 444 CTCCFQP 450
>gi|223633944 hypothetical protein LOC389762 [Homo sapiens]
Length = 917
Score = 36.6 bits (83), Expect = 0.027
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 26/125 (20%)
Query: 54 LSKHTDADIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSV 113
L +H D + + D +C+ +R T+ I +RLL++ ESL+ +
Sbjct: 108 LGQHHDTTLFRRLLCPDPVCRVCNRATADI--------QRLLSW---------ESLKDAA 150
Query: 114 LQIEQLQSMRSSQQTAFSTIKSSVSTKPHGCLL---------PPHSSAPDRLESMEVDLS 164
+ L S S +++F+ + +T P +L PP +PD + ++ S
Sbjct: 151 PSVSPLASSASGAESSFTLASTPSATTPEDLILSSRPKPSPPPPLILSPDLITTLADLFS 210
Query: 165 PSPIR 169
PSP+R
Sbjct: 211 PSPLR 215
>gi|223671858 hypothetical protein LOC389761 [Homo sapiens]
Length = 917
Score = 36.6 bits (83), Expect = 0.027
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 26/125 (20%)
Query: 54 LSKHTDADIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSV 113
L +H D + + D +C+ +R T+ I +RLL++ ESL+ +
Sbjct: 108 LGQHHDTTLFRRLLCPDPVCRVCNRATADI--------QRLLSW---------ESLKDAA 150
Query: 114 LQIEQLQSMRSSQQTAFSTIKSSVSTKPHGCLL---------PPHSSAPDRLESMEVDLS 164
+ L S S +++F+ + +T P +L PP +PD + ++ S
Sbjct: 151 PSVSPLASSASGAESSFTLASTPSATTPEDLILSSRPKPSPPPPLILSPDLITTLADLFS 210
Query: 165 PSPIR 169
PSP+R
Sbjct: 211 PSPLR 215
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 35.8 bits (81), Expect = 0.047
Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 12/187 (6%)
Query: 19 CFSLTNCGHVYCDACLG--KGKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKY 76
C SL C H +C AC + + C C+ P + + + ++A+ I K
Sbjct: 314 CVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEAYL--IQHPDKSR 371
Query: 77 SRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSS 136
S E Q ++ + K + +L + EE + +L++ + S S + +
Sbjct: 372 SEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYVVCRQC 431
Query: 137 VSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLT 196
+ PPH AP+ L +P + + P Q G H
Sbjct: 432 PEYRRQAA-QPPHCPAPEGEPGAPQALGDAPSTSVSLTTVQ---DYVCPLQ----GSHAL 483
Query: 197 ASFCFIP 203
+ CF P
Sbjct: 484 CTCCFQP 490
>gi|148833499 midline 1 [Homo sapiens]
Length = 667
Score = 33.1 bits (74), Expect = 0.30
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 2 ANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNE------CLICKAP---CRTV 52
A V C C Q P + + + C YCD CL N+ LI P R +
Sbjct: 114 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGL 173
Query: 53 LLSKHTDADIQAFFMSID----SLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEES 108
+ +H D + + ++ D +LCK R HR +A E+ +L+++
Sbjct: 174 MCLEHEDEKVNMYCVTDDQLICALCKLVGR-----------HRDHQVAALSERYDKLKQN 222
Query: 109 LRKSVLQI 116
L ++ +
Sbjct: 223 LESNLTNL 230
>gi|4557753 midline 1 [Homo sapiens]
Length = 667
Score = 33.1 bits (74), Expect = 0.30
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 2 ANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNE------CLICKAP---CRTV 52
A V C C Q P + + + C YCD CL N+ LI P R +
Sbjct: 114 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGL 173
Query: 53 LLSKHTDADIQAFFMSID----SLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEES 108
+ +H D + + ++ D +LCK R HR +A E+ +L+++
Sbjct: 174 MCLEHEDEKVNMYCVTDDQLICALCKLVGR-----------HRDHQVAALSERYDKLKQN 222
Query: 109 LRKSVLQI 116
L ++ +
Sbjct: 223 LESNLTNL 230
>gi|15451852 midline 1 [Homo sapiens]
Length = 667
Score = 33.1 bits (74), Expect = 0.30
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 2 ANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNE------CLICKAP---CRTV 52
A V C C Q P + + + C YCD CL N+ LI P R +
Sbjct: 114 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGL 173
Query: 53 LLSKHTDADIQAFFMSID----SLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEES 108
+ +H D + + ++ D +LCK R HR +A E+ +L+++
Sbjct: 174 MCLEHEDEKVNMYCVTDDQLICALCKLVGR-----------HRDHQVAALSERYDKLKQN 222
Query: 109 LRKSVLQI 116
L ++ +
Sbjct: 223 LESNLTNL 230
>gi|4502371 breast cancer antiestrogen resistance 3 [Homo sapiens]
Length = 825
Score = 33.1 bits (74), Expect = 0.30
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 30/135 (22%)
Query: 136 SVSTKPHGCLLPPHSSAPDRLESMEVDLSP---SPIRK--SEIAAGPARISMISPPQDGR 190
S S P GC LPP SS VD SP SP+ + SE A PA + +S D R
Sbjct: 338 SESYLPIGCKLPPQSSG--------VDTSPCPNSPVFRTGSEPALSPAVVRRVS--SDAR 387
Query: 191 MGPHLTASF-----------CFIPWLTLSKPP---VPGECVISRGSPCFCIDVCPHWLLL 236
G L S C +P+L + P + E +P F C L
Sbjct: 388 AGEALRGSDSQLCPKPPPKPCKVPFLKVPSSPSAWLNSEANYCELNPAFATG-CGRGAKL 446
Query: 237 LAFSSGRHGELTNSK 251
+ + G H EL +K
Sbjct: 447 PSCAQGSHTELLTAK 461
>gi|48717285 hypothetical protein LOC389763 [Homo sapiens]
Length = 1576
Score = 32.7 bits (73), Expect = 0.39
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 26/123 (21%)
Query: 56 KHTDADIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQ 115
+H D + + D +C+ R T+ I ++LL++ ESL+ +
Sbjct: 113 QHHDTNHFRRLLCPDPVCRVCKRATADI--------QQLLSW---------ESLKDAAPS 155
Query: 116 IEQLQSMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSA---------PDRLESMEVDLSPS 166
+ L S S+ +++F+ + +T P +L P A PD + ++ SPS
Sbjct: 156 VSPLASSASATESSFTLASTPSATPPEDLILSPRPKASPPPPLILSPDLITTLADLFSPS 215
Query: 167 PIR 169
P+R
Sbjct: 216 PLR 218
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 32.7 bits (73), Expect = 0.39
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 145 LLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLTASFCFIPW 204
L PP +P E+ SP P S ++ P M PP++ M P AS F P+
Sbjct: 545 LSPPFEESPLSPPPEELPTSPPP-EASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPF 603
Query: 205 LTLSKPPVPGECVIS 219
P P E +S
Sbjct: 604 EESPLSPPPEESPLS 618
Score = 32.7 bits (73), Expect = 0.39
Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 81 SQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTK 140
S++L+ ++ ++ +K+ + ++ ++ + Q+ + QQ ++ K
Sbjct: 3713 SRLLQERQLQLQQQRMQLAQKLQQQQQQQQQQQHLLGQVAIQQQQQQGPGVQTNQALGPK 3772
Query: 141 PHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGP 193
P G L+PP S ++ LSP P + + GPA+++++ G +GP
Sbjct: 3773 PQG-LMPPSSHQGLLVQQ----LSPQPPQGPQGMLGPAQVAVLQQQHPGALGP 3820
Score = 28.9 bits (63), Expect = 5.7
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 7 CNRCFQPPHRTSCFSLTNCGHVYCDACLGKG---------KKNECLICKAPCR 50
C C P F T+CGH Y ACL + EC +C+A CR
Sbjct: 229 CAVCEGPGELCDLFFCTSCGHHYHGACLDTALTARKRAGWQCPECKVCQA-CR 280
>gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 32.7 bits (73), Expect = 0.39
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 7 CNRCFQPPHRTSCFSLTNCGHVYCDACLG-------KGKKNECLICKAP 48
C+ CF + C C HVYC ACL + + +CL C P
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP 268
>gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 32.7 bits (73), Expect = 0.39
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 7 CNRCFQPPHRTSCFSLTNCGHVYCDACLG-------KGKKNECLICKAP 48
C+ CF + C C HVYC ACL + + +CL C P
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP 268
>gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 32.7 bits (73), Expect = 0.39
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 7 CNRCFQPPHRTSCFSLTNCGHVYCDACLG-------KGKKNECLICKAP 48
C+ CF + C C HVYC ACL + + +CL C P
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP 268
>gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens]
Length = 348
Score = 32.7 bits (73), Expect = 0.39
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 7 CNRCFQPPHRTSCFSLTNCGHVYCDACLG-------KGKKNECLICKAP 48
C+ CF + C C HVYC ACL + + +CL C P
Sbjct: 94 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP 142
>gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 32.7 bits (73), Expect = 0.39
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 7 CNRCFQPPHRTSCFSLTNCGHVYCDACLG-------KGKKNECLICKAP 48
C+ CF + C C HVYC ACL + + +CL C P
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP 268
>gi|7662344 U-box domain containing 5 isoform a [Homo sapiens]
Length = 541
Score = 32.3 bits (72), Expect = 0.52
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 7 CNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTV 52
C R F P + CGH+ C CLG+ +++ + C A R V
Sbjct: 486 CKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPV 531
>gi|31542779 tripartite motif family-like 1 [Homo sapiens]
Length = 468
Score = 32.3 bits (72), Expect = 0.52
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 49 CRTVLLSKHTDADIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEES 108
C+ V++S+ +M + K+ + Q+LE +EK R L K+++ S
Sbjct: 174 CKQVVVSE---------YMKMHQFLKEEEQLQLQLLEQEEKENMRKLRNNEIKLTQQIRS 224
Query: 109 LRKSVLQIEQLQSMRSSQQTAFSTIK 134
L K + QIE SSQ +AF +++
Sbjct: 225 LSKMIAQIES-----SSQSSAFESLE 245
>gi|40806196 U-box domain containing 5 isoform b [Homo sapiens]
Length = 487
Score = 32.3 bits (72), Expect = 0.52
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 7 CNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTV 52
C R F P + CGH+ C CLG+ +++ + C A R V
Sbjct: 432 CKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPV 477
>gi|223890259 midline 2 isoform 2 [Homo sapiens]
Length = 705
Score = 31.6 bits (70), Expect = 0.88
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 24/146 (16%)
Query: 5 VFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNE------CLICKAP---CRTVLLS 55
+ C C Q P R + + C YCD CL N+ L+ P R +
Sbjct: 137 IACQFCEQDPPRDAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVEPVPDTHLRGITCL 196
Query: 56 KHTDADIQAFFMSID----SLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRK 111
H + + + +S D +LCK R HR +A ++ +L+++L
Sbjct: 197 DHENEKVNMYCVSDDQLICALCKLVGR-----------HRDHQVASLNDRFEKLKQTLEM 245
Query: 112 SVLQIEQLQSMRSSQQTAFSTIKSSV 137
++ + + S +Q I V
Sbjct: 246 NLTNLVKRNSELENQMAKLIQICQQV 271
>gi|223890257 midline 2 isoform 1 [Homo sapiens]
Length = 735
Score = 31.6 bits (70), Expect = 0.88
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 24/146 (16%)
Query: 5 VFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNE------CLICKAP---CRTVLLS 55
+ C C Q P R + + C YCD CL N+ L+ P R +
Sbjct: 137 IACQFCEQDPPRDAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVEPVPDTHLRGITCL 196
Query: 56 KHTDADIQAFFMSID----SLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRK 111
H + + + +S D +LCK R HR +A ++ +L+++L
Sbjct: 197 DHENEKVNMYCVSDDQLICALCKLVGR-----------HRDHQVASLNDRFEKLKQTLEM 245
Query: 112 SVLQIEQLQSMRSSQQTAFSTIKSSV 137
++ + + S +Q I V
Sbjct: 246 NLTNLVKRNSELENQMAKLIQICQQV 271
>gi|67089160 promyelocytic leukemia protein isoform 11 [Homo
sapiens]
Length = 781
Score = 31.6 bits (70), Expect = 0.88
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 9 RCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDADIQAFFMS 68
RC Q C L C H C CL + +C IC+AP L T A FF S
Sbjct: 56 RCQQCQAEAKCPKLLPCLHTLCSGCL-EASGMQCPICQAPWP---LGADTPALDNVFFES 111
Query: 69 IDSLCKKY 76
+ Y
Sbjct: 112 LQRRLSVY 119
>gi|67089157 promyelocytic leukemia protein isoform 2 [Homo sapiens]
Length = 611
Score = 31.6 bits (70), Expect = 0.88
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 9 RCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDADIQAFFMS 68
RC Q C L C H C CL + +C IC+AP L T A FF S
Sbjct: 56 RCQQCQAEAKCPKLLPCLHTLCSGCL-EASGMQCPICQAPWP---LGADTPALDNVFFES 111
Query: 69 IDSLCKKY 76
+ Y
Sbjct: 112 LQRRLSVY 119
>gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens]
Length = 829
Score = 31.6 bits (70), Expect = 0.88
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 9 RCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDADIQAFFMS 68
RC Q C L C H C CL + +C IC+AP L T A FF S
Sbjct: 56 RCQQCQAEAKCPKLLPCLHTLCSGCL-EASGMQCPICQAPWP---LGADTPALDNVFFES 111
Query: 69 IDSLCKKY 76
+ Y
Sbjct: 112 LQRRLSVY 119
>gi|67089154 promyelocytic leukemia protein isoform 8 [Homo sapiens]
Length = 435
Score = 31.6 bits (70), Expect = 0.88
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 9 RCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDADIQAFFMS 68
RC Q C L C H C CL + +C IC+AP L T A FF S
Sbjct: 56 RCQQCQAEAKCPKLLPCLHTLCSGCL-EASGMQCPICQAPWP---LGADTPALDNVFFES 111
Query: 69 IDSLCKKY 76
+ Y
Sbjct: 112 LQRRLSVY 119
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,632,315
Number of Sequences: 37866
Number of extensions: 590427
Number of successful extensions: 3321
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 3223
Number of HSP's gapped (non-prelim): 197
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.