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Search of human proteins with 195963406
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195963406 B-cell translocation gene 3 isoform a [Homo
sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195963406 B-cell translocation gene 3 isoform a [Homo sapiens] 638 0.0
gi|28872722 B-cell translocation gene 3 isoform b [Homo sapiens] 520 e-148
gi|8923958 B-cell translocation gene 4 [Homo sapiens] 167 8e-42
gi|4502473 B-cell translocation protein 1 [Homo sapiens] 86 3e-17
gi|5802988 B-cell translocation gene 2 [Homo sapiens] 84 1e-16
gi|5032187 transducer of ERBB2, 1 [Homo sapiens] 76 3e-14
gi|7706739 transducer of ERBB2, 2 [Homo sapiens] 75 7e-14
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 42 8e-04
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 35 0.079
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 35 0.079
gi|118402590 myosin XV [Homo sapiens] 35 0.10
gi|46370073 GRB2-associated binding protein 1 isoform b [Homo sa... 35 0.10
gi|46370071 GRB2-associated binding protein 1 isoform a [Homo sa... 35 0.10
gi|55741677 SET domain containing 1A [Homo sapiens] 35 0.10
gi|239755282 PREDICTED: similar to Tripartite motif-containing p... 34 0.13
gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo ... 34 0.13
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 34 0.13
gi|150417989 cyclin K isoform 1 [Homo sapiens] 33 0.23
gi|134254450 patched isoform S [Homo sapiens] 33 0.30
gi|134254435 patched isoform S [Homo sapiens] 33 0.30
gi|134254468 patched isoform S [Homo sapiens] 33 0.30
gi|134254452 patched isoform S [Homo sapiens] 33 0.30
gi|134254432 patched isoform L' [Homo sapiens] 33 0.30
gi|134254466 patched isoform M [Homo sapiens] 33 0.30
gi|134254446 patched isoform L [Homo sapiens] 33 0.30
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 32 0.51
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 32 0.51
gi|210032580 SET domain containing 1B [Homo sapiens] 32 0.51
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 32 0.67
gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens] 32 0.67
>gi|195963406 B-cell translocation gene 3 isoform a [Homo sapiens]
Length = 296
Score = 638 bits (1645), Expect = 0.0
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI
Sbjct: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRRDGVSPCWPDCSQTPD 120
RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRRDGVSPCWPDCSQTPD
Sbjct: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRRDGVSPCWPDCSQTPD 120
Query: 121 LVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDENKDEISRKVTRALD 180
LVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDENKDEISRKVTRALD
Sbjct: 121 LVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDENKDEISRKVTRALD 180
Query: 181 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 240
KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY
Sbjct: 181 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 240
Query: 241 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH 296
RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH
Sbjct: 241 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH 296
>gi|28872722 B-cell translocation gene 3 isoform b [Homo sapiens]
Length = 252
Score = 520 bits (1338), Expect = e-148
Identities = 252/296 (85%), Positives = 252/296 (85%), Gaps = 44/296 (14%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI
Sbjct: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRRDGVSPCWPDCSQTPD 120
RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCR
Sbjct: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCR---------------- 104
Query: 121 LVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDENKDEISRKVTRALD 180
YGEKNNAFIVASFENKDENKDEISRKVTRALD
Sbjct: 105 ----------------------------YGEKNNAFIVASFENKDENKDEISRKVTRALD 136
Query: 181 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 240
KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY
Sbjct: 137 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 196
Query: 241 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH 296
RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH
Sbjct: 197 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH 252
>gi|8923958 B-cell translocation gene 4 [Homo sapiens]
Length = 223
Score = 167 bits (424), Expect = 8e-42
Identities = 96/236 (40%), Positives = 132/236 (55%), Gaps = 48/236 (20%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
M++EIA VFF TRLV+KHDKL K+ +E FAEKL IL E Y++HW+ + PSKGQA+RCI
Sbjct: 1 MRDEIATTVFFVTRLVKKHDKLSKQQIEDFAEKLMTILFETYRSHWHSDCPSKGQAFRCI 60
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRRDGVSPCWPDCSQTPD 120
R+N Q DP + +AC S + +S LGLPKE+T+WVDP EVCCR
Sbjct: 61 RINNNQNKDPILERACVESNVDFSHLGLPKEMTIWVDPFEVCCR---------------- 104
Query: 121 LVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDENKDEISRKVTRALD 180
YGEKN+ F VASF+ + E + E+ ++++ A+
Sbjct: 105 ----------------------------YGEKNHPFTVASFKGRWE-EWELYQQISYAVS 135
Query: 181 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKK 236
+ +SD SG+S +E SKE V P + +YQ+ E + P W +PRKK
Sbjct: 136 RASSDVSSGTSCDEESCSKEPRVIPK--VSNPKSIYQV-ENLKQPFQSWLQIPRKK 188
>gi|4502473 B-cell translocation protein 1 [Homo sapiens]
Length = 171
Score = 86.3 bits (212), Expect = 3e-17
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
M EIAA V F ++ +R + ++ F++ L +L E YK+HW+PEKP KG YRCI
Sbjct: 11 MIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCI 70
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCR 104
R+N ++DP + +A + + +L LP ELTLWVDP EV R
Sbjct: 71 RIN--HKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYR 114
>gi|5802988 B-cell translocation gene 2 [Homo sapiens]
Length = 158
Score = 84.0 bits (206), Expect = 1e-16
Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
M EIAA V F + L+R + ++ ++ F+ L L E YK+HW+PEKPSKG YRCI
Sbjct: 9 MLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCI 68
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCR 104
R+N ++DP + + + L LP ELTLWVDP EV R
Sbjct: 69 RIN--HKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYR 112
>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
Length = 345
Score = 76.3 bits (186), Expect = 3e-14
Identities = 35/85 (41%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 19 HDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCIRVNKFQRVDPDVLKACEN 78
++KL + V F E+L +L++KY+ HWYPEKP KG +RCI + ++VDP + +A +
Sbjct: 17 YNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIG--EKVDPVIEQASKE 74
Query: 79 SCILYSDL--GLPKELTLWVDPCEV 101
S + D+ LP++L++W+DP EV
Sbjct: 75 SGLDIDDVRGNLPQDLSVWIDPFEV 99
>gi|7706739 transducer of ERBB2, 2 [Homo sapiens]
Length = 344
Score = 75.1 bits (183), Expect = 7e-14
Identities = 34/85 (40%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 19 HDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCIRVNKFQRVDPDVLKACEN 78
++KL + + F E+L +L++KY+ HWYPEKP KG +RC+ + + VDP V A +
Sbjct: 17 YNKLPRRRADLFGEELERLLKKKYEGHWYPEKPLKGSGFRCVHIG--EMVDPVVELAAKR 74
Query: 79 SCILYSDL--GLPKELTLWVDPCEV 101
S + D+ +P+EL++W+DP EV
Sbjct: 75 SGLAVEDVRANVPEELSVWIDPFEV 99
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 41.6 bits (96), Expect = 8e-04
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 188 SGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPM--WHPLPRKK--PGMYRGN 243
+G S S TSK++ SS+ + S V + + PPLP+ WH + K +G+
Sbjct: 258 TGISYSIPSTSKQIVSPSSSMAQSKSQVQAMLPVALPPLPVPQWHHAHQLKALAASKQGS 317
Query: 244 GHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPP 277
+ P P G P G + PYRP+P PP
Sbjct: 318 ATKQQGPTPSWSGLPPPG-LSPPYRPVPSPHPPP 350
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 35.0 bits (79), Expect = 0.079
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 21/131 (16%)
Query: 157 IVASFENKDENKDEISRKVTRALDKVTSDYHSGSSSS-----DEETSKEMEVKPSSVTAA 211
+ +FEN + + I + TR + V S+ +GS S +E+ + E +
Sbjct: 91 VTVNFENSNGHMIPIGEESTREENVVKSEEGNGSVSEKTPPLEEQAEDKKENTENHSETP 150
Query: 212 ASPVYQISELIFPPLPMWHPLPRKKP----GMYRGNGHQNHYPPPVPFGYPNQGRKNKPY 267
A+P S PP P P P+K P G G H+ PP+ K
Sbjct: 151 AAPALPPSA---PPKPRPKPKPKKSPVPPKGATAGASHKGDEVPPI---------KKNTK 198
Query: 268 RPIPVTWVPPP 278
P VPPP
Sbjct: 199 APGKQAPVPPP 209
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 35.0 bits (79), Expect = 0.079
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 21/131 (16%)
Query: 157 IVASFENKDENKDEISRKVTRALDKVTSDYHSGSSSS-----DEETSKEMEVKPSSVTAA 211
+ +FEN + + I + TR + V S+ +GS S +E+ + E +
Sbjct: 102 VTVNFENSNGHMIPIGEESTREENVVKSEEGNGSVSEKTPPLEEQAEDKKENTENHSETP 161
Query: 212 ASPVYQISELIFPPLPMWHPLPRKKP----GMYRGNGHQNHYPPPVPFGYPNQGRKNKPY 267
A+P S PP P P P+K P G G H+ PP+ K
Sbjct: 162 AAPALPPSA---PPKPRPKPKPKKSPVPPKGATAGASHKGDEVPPI---------KKNTK 209
Query: 268 RPIPVTWVPPP 278
P VPPP
Sbjct: 210 APGKQAPVPPP 220
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 34.7 bits (78), Expect = 0.10
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 223 FPPLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPP 278
F P + + +P + G+Y G G + YPP VP+ YP + Y WVPPP
Sbjct: 369 FDPYGVHYTVPYAE-GVY-GGGDEAIYPPEVPYFYPEESASAFVY-----PWVPPP 417
>gi|46370073 GRB2-associated binding protein 1 isoform b [Homo
sapiens]
Length = 694
Score = 34.7 bits (78), Expect = 0.10
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 181 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 240
KV + GS SS+E + + P+S P Q S P+ + +P PG +
Sbjct: 428 KVKNVLTVGSVSSEELDENYVPMNPNS------PPRQHSSSFTEPIQEANYVPMT-PGTF 480
Query: 241 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRN 285
+ PPP G+ K P RP+PV PP + DRN
Sbjct: 481 DFSSFGMQVPPPAHMGF-RSSPKTPPRRPVPVADCEPPPV--DRN 522
>gi|46370071 GRB2-associated binding protein 1 isoform a [Homo
sapiens]
Length = 724
Score = 34.7 bits (78), Expect = 0.10
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 181 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 240
KV + GS SS+E + + P+S P Q S P+ + +P PG +
Sbjct: 428 KVKNVLTVGSVSSEELDENYVPMNPNS------PPRQHSSSFTEPIQEANYVPMT-PGTF 480
Query: 241 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRN 285
+ PPP G+ K P RP+PV PP + DRN
Sbjct: 481 DFSSFGMQVPPPAHMGF-RSSPKTPPRRPVPVADCEPPPV--DRN 522
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 34.7 bits (78), Expect = 0.10
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 162 ENKDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSK--EMEVKPSSVTAAASPVYQIS 219
EN + E S + + +S S SSSS E +S+ E E +P+++ +A+ P ++
Sbjct: 1026 ENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPREVP 1085
Query: 220 ELIFPPLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRP---------- 269
+ P P+ P+P + G + P P G + + P RP
Sbjct: 1086 --VPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTEESPPSAPLRPPEPPAGPPAP 1143
Query: 270 ---------IPVTWVPPP 278
P+ +PPP
Sbjct: 1144 APRPDERPSSPIPLLPPP 1161
>gi|239755282 PREDICTED: similar to Tripartite motif-containing
protein 43-like protein 1 [Homo sapiens]
Length = 185
Score = 34.3 bits (77), Expect = 0.13
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 120 DLVIRPPWPPKALDYRREPLRPASSF 145
D I P PPK LDY+ EPL PA SF
Sbjct: 24 DQAILLPQPPKELDYKHEPLCPALSF 49
>gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo
sapiens]
Length = 185
Score = 34.3 bits (77), Expect = 0.13
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 120 DLVIRPPWPPKALDYRREPLRPASSF 145
D I P PPK LDY+ EPL PA SF
Sbjct: 24 DQAILLPQPPKELDYKHEPLCPALSF 49
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 34.3 bits (77), Expect = 0.13
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 161 FENKDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISE 220
+ N E +EIS + ++ +D++T SD+E+S +EV + + E
Sbjct: 3471 YRNSIEFFEEISDEASKLVDRLTQSEREQEIVSDDESSSALEVSVIENLPPVETEHSVPE 3530
Query: 221 LIFPPLPMW 229
IF P+W
Sbjct: 3531 DIFDTRPIW 3539
Score = 28.5 bits (62), Expect = 7.4
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 184 SDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMYRGN 243
++ HS +SSS + T K V PS+ T SPV PP+ ++ P G
Sbjct: 1863 TERHSPASSSSK-TEKHSPVSPSTKTERHSPVSSTKTERHPPVSPSGKTDKRPPVSPSGR 1921
Query: 244 GHQNHYPPPVPFGYPNQGRKNKPYRP 269
++ PPV P + K P P
Sbjct: 1922 TEKH---PPVS---PGRTEKRLPVSP 1941
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 33.5 bits (75), Expect = 0.23
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 188 SGSSSSDEETSKEMEVKPSSVTAAASP----VYQISELIFPPLPMWHPLPRKKPGMYRGN 243
S SS + + + V P AA P + +I E PPLP HP P +KP +
Sbjct: 324 SPQPSSPRQVKRAVVVSPKEENKAAEPPPPKIPKI-ETTHPPLPPAHPPPDRKPPLAAAL 382
Query: 244 GHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPP 277
G + P PV + + P P PV PP
Sbjct: 383 G-EAEPPGPVDATDLPKVQIPPPAHPAPVHQPPP 415
>gi|134254450 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 187 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 226
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1064 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1122
Query: 227 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 269
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1123 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1167
>gi|134254435 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 187 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 226
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1064 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1122
Query: 227 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 269
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1123 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1167
>gi|134254468 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 187 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 226
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1064 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1122
Query: 227 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 269
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1123 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1167
>gi|134254452 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 187 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 226
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1064 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1122
Query: 227 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 269
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1123 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1167
>gi|134254432 patched isoform L' [Homo sapiens]
Length = 1446
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 187 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 226
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1214 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1272
Query: 227 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 269
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1273 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1317
>gi|134254466 patched isoform M [Homo sapiens]
Length = 1381
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 187 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 226
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1149 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1207
Query: 227 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 269
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1208 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1252
>gi|134254446 patched isoform L [Homo sapiens]
Length = 1447
Score = 33.1 bits (74), Expect = 0.30
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 187 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 226
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1215 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1273
Query: 227 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 269
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1274 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1318
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 32.3 bits (72), Expect = 0.51
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 27/131 (20%)
Query: 130 KALDYRR-EPLRPASSFLIMYGEKNNAFIVASFENK--------------------DENK 168
+A+ Y+ +P+ P L+ Y ++N I A+ E + ENK
Sbjct: 120 RAIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRKGKKKSQENK 179
Query: 169 DEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSS------VTAAASPVYQISELI 222
++ ++ L D+ S + E KE E KPS+ T ++ +
Sbjct: 180 NKGNKIQDIQLKTSEPDFTSANMRDSAEGPKEDEEKPSASALEQPATLQEVASQEVPPEL 239
Query: 223 FPPLPMWHPLP 233
P P W P P
Sbjct: 240 ATPAPAWEPQP 250
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 32.3 bits (72), Expect = 0.51
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 27/131 (20%)
Query: 130 KALDYRR-EPLRPASSFLIMYGEKNNAFIVASFENK--------------------DENK 168
+A+ Y+ +P+ P L+ Y ++N I A+ E + ENK
Sbjct: 120 RAIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRKGKKKSQENK 179
Query: 169 DEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSS------VTAAASPVYQISELI 222
++ ++ L D+ S + E KE E KPS+ T ++ +
Sbjct: 180 NKGNKIQDIQLKTSEPDFTSANMRDSAEGPKEDEEKPSASALEQPATLQEVASQEVPPEL 239
Query: 223 FPPLPMWHPLP 233
P P W P P
Sbjct: 240 ATPAPAWEPQP 250
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 32.3 bits (72), Expect = 0.51
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 18/165 (10%)
Query: 120 DLVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDENKDEISRKVTRAL 179
DL + P PP EP P + L+ + +V E DE + +
Sbjct: 587 DLGLGPRPPP-------EPGPPDPAGLLSQTAEVALDLVGDRTPTSEKMDEGQQSSGEDM 639
Query: 180 DKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELI-----FPPLPMWHPLPR 234
+ ++ D + + + K M V P + AA V + + FPPLP P P
Sbjct: 640 E-ISDDEMPSAPITSADCPKPMVVTPGAAAVAAPSVLAPTLPLPPPPGFPPLPPPPPPPP 698
Query: 235 KKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPV-TWVPPP 278
+PG PPP P P P P+P VPPP
Sbjct: 699 PQPGF----PMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPP 739
Score = 28.1 bits (61), Expect = 9.7
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 212 ASPVYQISELIFP-PLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPI 270
ASPV + L P PLP+ PLP P + R Q P P+P P P
Sbjct: 1420 ASPVLLETGLPLPLPLPL--PLPLALPAVLRA---QARAPTPLP-----------PLLPA 1463
Query: 271 PVTWVPPP 278
P+ PPP
Sbjct: 1464 PLASCPPP 1471
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 32.0 bits (71), Expect = 0.67
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 162 ENKDENKDEISRKVTRALDKVT----SDYHSGSSSSD-------EETSKEMEV------- 203
E KD + + + V + K T D SSS+ EE S+E V
Sbjct: 1224 EKKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPES 1283
Query: 204 KPSSVTAAASPVYQISE--LIFPPLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQG 261
K ++ A+ Q+S+ L+ PP P PRK+ + + PPP P P Q
Sbjct: 1284 KQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPP-PESGPEQS 1342
Query: 262 RKNK--PYRPIPVTWVP-----PPGMHCDRN 285
++ K P IPV P PP ++ N
Sbjct: 1343 KQKKVAPRPSIPVKQKPKEKEKPPPVNKQEN 1373
>gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens]
Length = 239
Score = 32.0 bits (71), Expect = 0.67
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 20/102 (19%)
Query: 192 SSDEETSKEME--VKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMYRGNGHQNHY 249
++ E+ + EME KP A P Y L PP P P Y G +Y
Sbjct: 7 TAPEQPAGEMENQTKPPDPRPDAPPEYNSHFLPGPPGTAVPP-----PTGYPGGLPMGYY 61
Query: 250 PPPVPFGYP-------------NQGRKNKPYRPIPVTWVPPP 278
P P +P G+ P + +P+TW+P P
Sbjct: 62 SPQQPSTFPLYQPVGGIHPVRYQPGKYPMPNQSVPITWMPGP 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,600,056
Number of Sequences: 37866
Number of extensions: 854225
Number of successful extensions: 3055
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 2978
Number of HSP's gapped (non-prelim): 176
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.