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Search of human proteins with 194363758
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194363758 signal recognition particle 9kDa isoform 1 [Homo
sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194363758 signal recognition particle 9kDa isoform 1 [Homo sa... 167 1e-42
gi|169201709 PREDICTED: signal recognition particle 9-like 1 [Ho... 100 2e-22
gi|4507217 signal recognition particle 9kDa isoform 2 [Homo sapi... 100 2e-22
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 45 1e-05
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 45 2e-05
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 44 4e-05
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 43 5e-05
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 38 0.002
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 37 0.003
gi|148236061 hypothetical protein LOC285501 [Homo sapiens] 37 0.004
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 36 0.006
gi|66348062 fumarylacetoacetate hydrolase domain containing 1 is... 36 0.008
gi|61969666 arginine-fifty homeobox [Homo sapiens] 36 0.008
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 35 0.010
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 35 0.010
gi|94680985 cyclin J-like [Homo sapiens] 35 0.010
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 35 0.013
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 34 0.029
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 34 0.029
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 33 0.049
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 33 0.064
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 33 0.064
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 32 0.083
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 32 0.083
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens] 32 0.11
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens] 32 0.11
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 32 0.11
gi|218156307 anoctamin 6 isoform c [Homo sapiens] 31 0.19
gi|218156305 anoctamin 6 isoform c [Homo sapiens] 31 0.19
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 31 0.19
>gi|194363758 signal recognition particle 9kDa isoform 1 [Homo
sapiens]
Length = 82
Score = 167 bits (424), Expect = 1e-42
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQCS 60
MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQCS
Sbjct: 1 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQCS 60
Query: 61 GMIIAHCILDLLGSSGPLASAS 82
GMIIAHCILDLLGSSGPLASAS
Sbjct: 61 GMIIAHCILDLLGSSGPLASAS 82
>gi|169201709 PREDICTED: signal recognition particle 9-like 1
[Homo sapiens]
Length = 86
Score = 100 bits (249), Expect = 2e-22
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV 47
MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV
Sbjct: 1 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV 47
>gi|4507217 signal recognition particle 9kDa isoform 2 [Homo
sapiens]
Length = 86
Score = 100 bits (249), Expect = 2e-22
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV 47
MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV
Sbjct: 1 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV 47
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 45.4 bits (106), Expect = 1e-05
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 38 LCVKVTDDLVRQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
L + D ++ LALL RL+CSG+I+AHC L LLGSS LA AS
Sbjct: 91 LALPFHDPYRQRSLALLPRLECSGVILAHCNLCLLGSSDSLALAS 135
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 44.7 bits (104), Expect = 2e-05
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 8 EEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQCSGMIIAHC 67
EE A EKL + + + R DG +K + RQ L L RL+C G+I+A+C
Sbjct: 360 EELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDE---RQDLTLSPRLECGGVIMAYC 416
Query: 68 ILDLLGSSGPLASAS 82
L LLGSS P SAS
Sbjct: 417 SLKLLGSSDPPTSAS 431
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 43.5 bits (101), Expect = 4e-05
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 40 VKVTDDLVRQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
++ T + + C + RL+CSG +IAHC L LL SS P SAS
Sbjct: 427 IQQTSEETKSCSVMSPRLECSGTVIAHCSLKLLDSSNPPTSAS 469
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 43.1 bits (100), Expect = 5e-05
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 47 VRQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
+RQ LAL +L+CSG+++AHC L LLGSS ASAS
Sbjct: 132 LRQNLALSPKLECSGVVLAHCNLHLLGSSYSPASAS 167
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 49 QCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
Q LAL +L+CSG I+AH L LLGSS ASAS
Sbjct: 456 QSLALSPKLECSGTILAHSNLRLLGSSDSPASAS 489
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 54 LLRLQCSGMIIAHCILDLLGSSGPLASAS 82
L RL+CSG I+A C LD LGSS P SAS
Sbjct: 209 LPRLECSGAIMARCNLDHLGSSDPPTSAS 237
>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
Length = 109
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 55 LRLQCSGMIIAHCILDLLGSSGPLASAS 82
++L+CSG I+AHC L LLGS P SAS
Sbjct: 20 VKLECSGPILAHCNLCLLGSRHPSTSAS 47
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 36.2 bits (82), Expect = 0.006
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 56 RLQCSGMIIAHCILDLLGSSGPLASAS 82
RL+CSGMI+AHC L L GS ASAS
Sbjct: 431 RLECSGMILAHCNLRLPGSRDSPASAS 457
>gi|66348062 fumarylacetoacetate hydrolase domain containing 1
isoform 1 [Homo sapiens]
Length = 248
Score = 35.8 bits (81), Expect = 0.008
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 47 VRQCLALLLRLQCSGMIIAHCILDLLGSSGP 77
+RQ L L +L+CS I AHC L+L GSS P
Sbjct: 212 LRQGLTLSPKLECSSAITAHCSLELPGSSNP 242
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 35.8 bits (81), Expect = 0.008
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 37 NLCVKVTDDLVRQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
N+ V D LL +L+CSG + A+C L+L GS+ P SAS
Sbjct: 22 NMKVIPPQDPASPSFTLLSKLECSGTVSAYCSLNLPGSTDPPTSAS 67
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 35.4 bits (80), Expect = 0.010
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 48 RQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
++ LAL RL+ +GMI AHC L L GSS ASAS
Sbjct: 56 KESLALSPRLERNGMISAHCNLCLTGSSNSPASAS 90
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 35.4 bits (80), Expect = 0.010
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 51 LALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
L L RL+CS I AHC L+LL SS P S S
Sbjct: 586 LTLWPRLECSSTITAHCSLNLLDSSNPPTSTS 617
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 35.4 bits (80), Expect = 0.010
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 56 RLQCSGMIIAHCILDLLGSSGPLASA 81
RL+CSGMI AHC L L GSS ASA
Sbjct: 102 RLKCSGMISAHCNLHLPGSSNSPASA 127
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 56 RLQCSGMIIAHCILDLLGSSGPLASAS 82
RL+CSG I AHC L L GSS ASAS
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASAS 34
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 33.9 bits (76), Expect = 0.029
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 51 LALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
LAL RL+CSG I AHC L GSS A AS
Sbjct: 138 LALSPRLECSGKISAHCNPHLQGSSNSPAQAS 169
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo
sapiens]
Length = 183
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 47 VRQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
+R L L RL+ SG+I AHC L LL SS ASAS
Sbjct: 22 LRWSLVLSPRLEPSGVISAHCNLHLLASSDSSASAS 57
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 33.1 bits (74), Expect = 0.049
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 48 RQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
+Q L LL RL+CSG +C LDL SS P AS
Sbjct: 172 KQDLTLLPRLECSGTNTTYCSLDLPSSSDPPILAS 206
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/32 (62%), Positives = 21/32 (65%)
Query: 51 LALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
LAL RL+ SG I A C L LLGSS ASAS
Sbjct: 8 LALYPRLEFSGTISARCNLRLLGSSDSPASAS 39
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 32.7 bits (73), Expect = 0.064
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 48 RQCLALLLRLQCSGMIIAHCILDLLGSSGPLAS 80
R L LL R +CSG + AHC L L GSS AS
Sbjct: 106 RWSLTLLPRPECSGAVSAHCNLHLPGSSDSHAS 138
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 32.3 bits (72), Expect = 0.083
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 56 RLQCSGMIIAHCILDLLGSSGPLASAS 82
RL+C+G I AHC L L GSS AS+S
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSS 75
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 32.3 bits (72), Expect = 0.083
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 56 RLQCSGMIIAHCILDLLGSSGPLASAS 82
RL+C+G I AHC L L GSS AS+S
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASSS 75
>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
Length = 600
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 56 RLQCSGMIIAHCILDLLGSSGPLASAS 82
RL+ SG I+AHC LLGS+ ASAS
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASAS 59
>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
Length = 619
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 56 RLQCSGMIIAHCILDLLGSSGPLASAS 82
RL+ SG I+AHC LLGS+ ASAS
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASAS 59
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 56 RLQCSGMIIAHCILDLLGSSGPLASAS 82
RL+CSG I HC L L GSS ASAS
Sbjct: 799 RLECSGTISPHCNLLLPGSSNSPASAS 825
>gi|218156307 anoctamin 6 isoform c [Homo sapiens]
Length = 929
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 38 LCVKVTDDLVRQCLALLLRLQCSGMIIAHCILDL 71
+ K+ +V + LALL RL SGMI+AHC L L
Sbjct: 831 IAAKLAFIIVMEYLALLPRLGHSGMILAHCNLRL 864
>gi|218156305 anoctamin 6 isoform c [Homo sapiens]
Length = 929
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 38 LCVKVTDDLVRQCLALLLRLQCSGMIIAHCILDL 71
+ K+ +V + LALL RL SGMI+AHC L L
Sbjct: 831 IAAKLAFIIVMEYLALLPRLGHSGMILAHCNLRL 864
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/36 (52%), Positives = 21/36 (58%)
Query: 47 VRQCLALLLRLQCSGMIIAHCILDLLGSSGPLASAS 82
++Q LAL L CS I AHC L GSS ASAS
Sbjct: 1096 IKQSLALSPGLGCSSAISAHCNFRLPGSSDFPASAS 1131
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,038,952
Number of Sequences: 37866
Number of extensions: 94810
Number of successful extensions: 240
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 46
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.