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Search of human proteins with 194306647
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194306647 protein phosphatase 1, regulatory subunit 14D
isoform 2 [Homo sapiens]
(200 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194306647 protein phosphatase 1, regulatory subunit 14D isofo... 414 e-116
gi|8923226 protein phosphatase 1, regulatory subunit 14D isoform... 180 8e-46
gi|15147250 protein phosphatase 1, regulatory (inhibitor) subuni... 50 1e-06
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 45 4e-05
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 45 4e-05
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 42 3e-04
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 42 3e-04
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 41 6e-04
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 41 8e-04
gi|149588643 zinc finger protein 283 [Homo sapiens] 39 0.004
gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo sa... 36 0.019
gi|239755567 PREDICTED: similar to protein phosphatase 1 regulat... 36 0.019
gi|20162550 protein phosphatase 1 regulatory subunit 14B [Homo s... 36 0.019
gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN... 36 0.025
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 35 0.043
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens] 34 0.073
gi|19311006 protein phosphatase 1, regulatory (inhibitor) subuni... 34 0.073
gi|239754969 PREDICTED: hypothetical protein [Homo sapiens] 34 0.073
gi|239749517 PREDICTED: hypothetical protein [Homo sapiens] 34 0.073
gi|239743656 PREDICTED: hypothetical protein XP_002342923 [Homo ... 34 0.073
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 34 0.095
gi|73390140 LIM domain kinase 2 isoform 1 [Homo sapiens] 33 0.12
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 32 0.28
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 32 0.28
gi|94536788 THAP domain containing 9 [Homo sapiens] 31 0.61
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 31 0.80
gi|209364547 suppressor of S. cerevisiae gcr2 isoform 2 [Homo sa... 31 0.80
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 30 1.0
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 30 1.4
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 30 1.8
>gi|194306647 protein phosphatase 1, regulatory subunit 14D isoform
2 [Homo sapiens]
Length = 200
Score = 414 bits (1064), Expect = e-116
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MLSSSPASCTSPSPDGENPCKKVHWASGRRRTSSTDSESKSHPDSSKIPRSRRPSRLTVK 60
MLSSSPASCTSPSPDGENPCKKVHWASGRRRTSSTDSESKSHPDSSKIPRSRRPSRLTVK
Sbjct: 1 MLSSSPASCTSPSPDGENPCKKVHWASGRRRTSSTDSESKSHPDSSKIPRSRRPSRLTVK 60
Query: 61 YDRGQLQRWLEMEQWVDAQVQELFQSLALSPRLECSGVIHSLQLLPPGFNRFSCLSSWSS 120
YDRGQLQRWLEMEQWVDAQVQELFQSLALSPRLECSGVIHSLQLLPPGFNRFSCLSSWSS
Sbjct: 61 YDRGQLQRWLEMEQWVDAQVQELFQSLALSPRLECSGVIHSLQLLPPGFNRFSCLSSWSS 120
Query: 121 WDYGIKQPLLSLRLTWKLSWIYPQRSRRLSWRPFLGTAPAPQRLLSLSCSVNSRNSGDSA 180
WDYGIKQPLLSLRLTWKLSWIYPQRSRRLSWRPFLGTAPAPQRLLSLSCSVNSRNSGDSA
Sbjct: 121 WDYGIKQPLLSLRLTWKLSWIYPQRSRRLSWRPFLGTAPAPQRLLSLSCSVNSRNSGDSA 180
Query: 181 GLRNKPERPSLAASALPGLP 200
GLRNKPERPSLAASALPGLP
Sbjct: 181 GLRNKPERPSLAASALPGLP 200
>gi|8923226 protein phosphatase 1, regulatory subunit 14D isoform
1 [Homo sapiens]
Length = 145
Score = 180 bits (456), Expect = 8e-46
Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 1 MLSSSPASCTSPSPDGENPCKKVHWASGRRRTSSTDSESKSHPDSSKIPRSRRPSRLTVK 60
MLSSSPASCTSPSPDGENPCKKVHWASGRRRTSSTDSESKSHPDSSKIPRSRRPSRLTVK
Sbjct: 1 MLSSSPASCTSPSPDGENPCKKVHWASGRRRTSSTDSESKSHPDSSKIPRSRRPSRLTVK 60
Query: 61 YDRGQLQRWLEMEQWVDAQVQELFQSLA 88
YDRGQLQRWLEMEQWVDAQVQELFQ A
Sbjct: 61 YDRGQLQRWLEMEQWVDAQVQELFQDQA 88
>gi|15147250 protein phosphatase 1, regulatory (inhibitor) subunit
14A [Homo sapiens]
Length = 147
Score = 50.1 bits (118), Expect = 1e-06
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 28 GRRRTSSTDSESKSH-PDSSKIPRSRRPSRLTVKYDRGQLQRWLEMEQWVDAQVQELFQS 86
G+R S S S++ P S +R +R+TVKYDR +LQR L++E+W+D +++EL++
Sbjct: 7 GKRVLSKLQSPSRARGPGGSPGGLQKRHARVTVKYDRRELQRRLDVEKWIDGRLEELYRG 66
Query: 87 L 87
+
Sbjct: 67 M 67
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 45.1 bits (105), Expect = 4e-05
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 83 LFQSLALSPR--LECSGVIHSLQLLPPGFNRFSCLSSWSSWDY 123
L +S AL+P+ + C + SLQ LPPGF RFSCLS SSWDY
Sbjct: 299 LRRSFALAPQAGVRCRD-LDSLQPLPPGFKRFSCLSLPSSWDY 340
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 45.1 bits (105), Expect = 4e-05
Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 83 LFQSLALSPR--LECSGVIHSLQLLPPGFNRFSCLSSWSSWDY 123
L +S AL+P+ + C + SLQ LPPGF RFSCLS SSWDY
Sbjct: 299 LRRSFALAPQAGVRCRD-LDSLQPLPPGFKRFSCLSLPSSWDY 340
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 42.4 bits (98), Expect = 3e-04
Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 83 LFQSLALSPR--LECSGVIHSLQLLPPGFNRFSCLSSWSSWDY 123
L +S AL+P+ + C + SLQ LPPGF RFSCLS SSW Y
Sbjct: 299 LRRSFALAPQAGVRCRD-LDSLQPLPPGFKRFSCLSLPSSWGY 340
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 42.4 bits (98), Expect = 3e-04
Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 83 LFQSLALSPR--LECSGVIHSLQLLPPGFNRFSCLSSWSSWDY 123
L +S AL+P+ + C + SLQ LPPGF RFSCLS SSW Y
Sbjct: 299 LRRSFALAPQAGVRCRD-LDSLQPLPPGFKRFSCLSLPSSWGY 340
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 41.2 bits (95), Expect = 6e-04
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 101 SLQLLPPGFNRFSCLSSWSSWDYGIKQ 127
SLQ LPP F RFSCLS SSWDY + +
Sbjct: 35 SLQPLPPRFKRFSCLSLQSSWDYSLSK 61
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 40.8 bits (94), Expect = 8e-04
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 65 QLQRWLEMEQWVDAQVQELFQSLALSPRLECSGV----IHSLQLLPPGFNRFSCLSSWSS 120
+L + ++ +Q +V+ + S + +GV + SLQ LPPGF +FSCL SS
Sbjct: 333 ELSKAIQYQQHFSRRVKRREKQFPDSRSVAQAGVQWRNLGSLQPLPPGFKQFSCLILPSS 392
Query: 121 WDYGIKQPLLS 131
WDY P L+
Sbjct: 393 WDYRSVPPYLA 403
>gi|149588643 zinc finger protein 283 [Homo sapiens]
Length = 679
Score = 38.5 bits (88), Expect = 0.004
Identities = 17/23 (73%), Positives = 17/23 (73%)
Query: 101 SLQLLPPGFNRFSCLSSWSSWDY 123
SLQ PPGF FSCLS SSWDY
Sbjct: 18 SLQAPPPGFTLFSCLSLLSSWDY 40
>gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo
sapiens]
Length = 2342
Score = 36.2 bits (82), Expect = 0.019
Identities = 17/23 (73%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Query: 95 CSGVIHS-LQLLPPGFNRFSCLS 116
CS ++ S LQLLPPGF RFSCLS
Sbjct: 85 CSAMVPSQLQLLPPGFKRFSCLS 107
>gi|239755567 PREDICTED: similar to protein phosphatase 1
regulatory subunit 14B [Homo sapiens]
Length = 147
Score = 36.2 bits (82), Expect = 0.019
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 52 RRPSRLTVKYDRGQLQRWLEMEQWVDAQVQELF 84
RR ++TVKYDR +L++ L +E+W+ Q+ L+
Sbjct: 51 RRQGKVTVKYDRKELRKRLNLEEWILEQLTRLY 83
>gi|20162550 protein phosphatase 1 regulatory subunit 14B [Homo
sapiens]
Length = 147
Score = 36.2 bits (82), Expect = 0.019
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 52 RRPSRLTVKYDRGQLQRWLEMEQWVDAQVQELF 84
RR ++TVKYDR +L++ L +E+W+ Q+ L+
Sbjct: 51 RRQGKVTVKYDRKELRKRLNLEEWILEQLTRLY 83
>gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
synthase isoform 3 [Homo sapiens]
Length = 500
Score = 35.8 bits (81), Expect = 0.025
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 101 SLQLLPPGFNRFSCLSSWSSWDY 123
SLQ PPGF F+CLS SSWDY
Sbjct: 8 SLQPPPPGFTPFACLSLPSSWDY 30
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 35.0 bits (79), Expect = 0.043
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 3 SSSPASCTSPSPDGENPCKKVHWASGRRRTSSTDSESKSHPDSSKIPRSRRPSRLTVKYD 62
S+ P SP P + P + W G ++ DS PDS+ P SR P R+ +
Sbjct: 89 SAGPGPARSPPPSSKEPPEGT-WTEGAPVKAAEDSARPELPDSAVGPGSREPLRVP---E 144
Query: 63 RGQLQRWLEMEQWVDAQVQELFQS 86
L+R E E+ D + Q + S
Sbjct: 145 AVALERRREQEEKEDMETQAVATS 168
>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
Length = 819
Score = 34.3 bits (77), Expect = 0.073
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 84 FQSLALSPRLECSGV----IHSLQLLPPGFNRFSCLSSWSSWDYGIK 126
F+ ++ + + GV I SLQ L F +FSCLS S+WDY +K
Sbjct: 766 FEKEKMNAKWDTPGVQWCDISSLQPLTSRFQQFSCLSLPSTWDYRVK 812
>gi|19311006 protein phosphatase 1, regulatory (inhibitor) subunit
14C [Homo sapiens]
Length = 165
Score = 34.3 bits (77), Expect = 0.073
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 50 RSRRPSRLTVKYDRGQLQRWLEMEQWVDAQVQELF 84
R + ++TVKYDR +L++ L +E+W+ Q+ +L+
Sbjct: 65 RRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLY 99
>gi|239754969 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 34.3 bits (77), Expect = 0.073
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 106 PPGFNRFSCLSSWSSWDYGI 125
PP F RFSCLS SSWDY +
Sbjct: 154 PPRFKRFSCLSLPSSWDYRV 173
>gi|239749517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 34.3 bits (77), Expect = 0.073
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 106 PPGFNRFSCLSSWSSWDYGI 125
PP F RFSCLS SSWDY +
Sbjct: 154 PPRFKRFSCLSLPSSWDYRV 173
>gi|239743656 PREDICTED: hypothetical protein XP_002342923 [Homo
sapiens]
Length = 184
Score = 34.3 bits (77), Expect = 0.073
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 106 PPGFNRFSCLSSWSSWDYGI 125
PP F RFSCLS SSWDY +
Sbjct: 154 PPRFKRFSCLSLPSSWDYRV 173
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 33.9 bits (76), Expect = 0.095
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 99 IHSLQLLPPGFNRFSCLSSWSSWDYGIK 126
I SLQ L F +FSCLS S+WDY +K
Sbjct: 791 ISSLQPLTSRFQQFSCLSLPSTWDYRVK 818
>gi|73390140 LIM domain kinase 2 isoform 1 [Homo sapiens]
Length = 686
Score = 33.5 bits (75), Expect = 0.12
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 52 RRPSRLTVKYDRGQLQRWLEMEQWVDAQVQELF 84
RR ++T+KYD +L++ L +E+W+ Q+ L+
Sbjct: 590 RRQGKVTIKYDPKELRKHLNLEEWILEQLTRLY 622
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 32.3 bits (72), Expect = 0.28
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 5 SPASCTSPSPDGENPCKKVHWASGRRRTSSTDSESKSHPDSSKIPRSRRPSR-LTVKYDR 63
SP++ SP+ D K+ S RR T +S+S ++ R R+ SR + K D
Sbjct: 796 SPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDI 855
Query: 64 GQLQRWLEMEQWVDAQVQELFQSLALSPRLECS 96
+ +R + +E +S +LSPR E S
Sbjct: 856 ARERRQSQSRSPKRDTTRESRRSESLSPRRETS 888
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 32.3 bits (72), Expect = 0.28
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 99 IHSLQLLPPGFNRFSCLSSWSSWDY 123
+ SLQ PPGF RFS LS +SW+Y
Sbjct: 1003 LSSLQPPPPGFKRFSHLSLPNSWNY 1027
>gi|94536788 THAP domain containing 9 [Homo sapiens]
Length = 903
Score = 31.2 bits (69), Expect = 0.61
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 78 AQVQELFQSLALSPRLECSGVIHSLQLLPPGFNRFSCLSSWSSWDYGIKQPLL 130
A E SL L P C G IH L+L+ N F +S + + G+K PLL
Sbjct: 487 ASALEYLLSLDLPPFQNCIGTIHFLRLIN---NLFDIFNSRNCYGKGLKGPLL 536
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 30.8 bits (68), Expect = 0.80
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 78 AQVQELFQSLALSPRLECSGVI 99
+Q+QE +SLALSPRLE +G+I
Sbjct: 50 SQIQEFKESLALSPRLERNGMI 71
>gi|209364547 suppressor of S. cerevisiae gcr2 isoform 2 [Homo
sapiens]
Length = 677
Score = 30.8 bits (68), Expect = 0.80
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 102 LQLLPPGFNRFSCLSSWSSWD 122
LQ PPGF F CLS S+WD
Sbjct: 387 LQAPPPGFTPFICLSLLSTWD 407
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 30.4 bits (67), Expect = 1.0
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 83 LFQSLALSPRLECSGVI 99
L Q+LALSP+LECSGV+
Sbjct: 132 LRQNLALSPKLECSGVV 148
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 30.0 bits (66), Expect = 1.4
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 85 QSLALSPRLECSGVI 99
QSLALSP+LECSG I
Sbjct: 456 QSLALSPKLECSGTI 470
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 29.6 bits (65), Expect = 1.8
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 4 SSPASCTSPSPDGENPCKKVHWA------SGRRRTSSTDSESKSHPDS-SKIPRSRRPSR 56
+S A S S DGE +K + S SS+DSES+S P+S S+ R +
Sbjct: 743 NSKAKGKSDSEDGEKENEKSKTSDSSNDESSSIEDSSSDSESESEPESESESRRVTKEKE 802
Query: 57 LTVKYDRGQLQR---WLEMEQWVDAQVQELFQSLALSPRL 93
K DR L + L+++ + + ALSP L
Sbjct: 803 KKTKQDRTPLTKDVSLLDLDDFNPVSTPVALPTPALSPSL 842
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,525,514
Number of Sequences: 37866
Number of extensions: 439878
Number of successful extensions: 1742
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1677
Number of HSP's gapped (non-prelim): 83
length of query: 200
length of database: 18,247,518
effective HSP length: 97
effective length of query: 103
effective length of database: 14,574,516
effective search space: 1501175148
effective search space used: 1501175148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.