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Search of human proteins with 194294556
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194294556 SET binding protein 1 isoform b [Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194294556 SET binding protein 1 isoform b [Homo sapiens] 491 e-139
gi|194294554 SET binding protein 1 isoform a [Homo sapiens] 360 e-100
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 78 8e-15
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 38 0.009
gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)... 37 0.015
gi|150456444 hypothetical protein LOC57578 [Homo sapiens] 37 0.020
gi|55956788 nucleolin [Homo sapiens] 35 0.045
gi|5454102 transforming, acidic coiled-coil containing protein 3... 35 0.077
gi|192807336 arsenate resistance protein 2 isoform e [Homo sapiens] 34 0.10
gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens] 34 0.10
gi|192807332 arsenate resistance protein 2 isoform c [Homo sapiens] 34 0.10
gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens] 34 0.10
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 34 0.13
gi|112807226 hypothetical protein LOC91748 [Homo sapiens] 33 0.17
gi|44890062 hypothetical protein LOC91748 [Homo sapiens] 33 0.17
gi|164419758 bromodomain containing 2 [Homo sapiens] 33 0.22
gi|4826806 bromodomain containing 2 [Homo sapiens] 33 0.22
gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens] 33 0.29
gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens] 33 0.29
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 33 0.29
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 33 0.29
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 33 0.29
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 33 0.29
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 32 0.38
gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo sa... 32 0.38
gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo sa... 32 0.38
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 32 0.50
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 32 0.50
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 32 0.50
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 32 0.50
>gi|194294556 SET binding protein 1 isoform b [Homo sapiens]
Length = 242
Score = 491 bits (1264), Expect = e-139
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MESRETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEE 60
MESRETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEE
Sbjct: 1 MESRETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEE 60
Query: 61 DELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNL 120
DELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNL
Sbjct: 61 DELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNL 120
Query: 121 ENYICPPEIKITIKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQ 180
ENYICPPEIKITIKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQ
Sbjct: 121 ENYICPPEIKITIKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQ 180
Query: 181 IKDSSKEEVWKRRGGQGIPFKKQFLSQERAMCFSCPRNPFPAKPGSLTLPFHSEPAVWAQ 240
IKDSSKEEVWKRRGGQGIPFKKQFLSQERAMCFSCPRNPFPAKPGSLTLPFHSEPAVWAQ
Sbjct: 181 IKDSSKEEVWKRRGGQGIPFKKQFLSQERAMCFSCPRNPFPAKPGSLTLPFHSEPAVWAQ 240
Query: 241 EV 242
EV
Sbjct: 241 EV 242
>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
Length = 1596
Score = 360 bits (924), Expect = e-100
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MESRETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEE 60
MESRETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEE
Sbjct: 1 MESRETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEE 60
Query: 61 DELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNL 120
DELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNL
Sbjct: 61 DELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNL 120
Query: 121 ENYICPPEIKITIKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQ 180
ENYICPPEIKITIKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQ
Sbjct: 121 ENYICPPEIKITIKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQ 180
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 77.8 bits (190), Expect = 8e-15
Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 23/156 (14%)
Query: 53 ERMEPEEEDELGSGRDVDSNSNADSEKWVAGDGLEE--QEFSIKEANFTEGSLKLKIQT- 109
E+ EEED R+ + + D DGL + Q+FS+KE NF+EG+LKLKI
Sbjct: 40 EKNTKEEEDLRKRNRERNIEAGKD-------DGLTDAQQQFSVKETNFSEGNLKLKIGLQ 92
Query: 110 TKRAKKPPKNLENYICPPEIKITIKQSGDQKVSRAGKNSKATKEE--ERSHSKKKLLTAS 167
KR KKPPKNLENY+C P IK TIK +K ++GK + E + K A
Sbjct: 93 AKRTKKPPKNLENYVCRPAIKTTIKH--PRKALKSGKMTDEKNEHCPSKRDPSKLYKKAD 150
Query: 168 DLAASDLKGFQPQIKDSSKEEVWKRRGGQGIPFKKQ 203
D+AA I+ S+E + G+ P K+
Sbjct: 151 DVAA---------IECQSEEVIRLHSQGENNPLSKK 177
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 37.7 bits (86), Expect = 0.009
Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 7/153 (4%)
Query: 5 ETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEEDELG 64
E + +GG + + K A AGE GPG+ + EPEE E+G
Sbjct: 50 EEEEQAASQGGTAADEQAEAPKGLTAAEAAGEE-----GPGEPGRPAEPQPEPEEPAEVG 104
Query: 65 SGRDVDSNSNADSEKWVAGDGLEEQEFSI--KEANFTEGSLKLKIQTTKRAKKPPKNLEN 122
+ A E+ A G EE E + KE F +I + A P E
Sbjct: 105 AEEPAQPEPGAGPEELEAEAGAEELEQAAEGKEVRFQASLPLTRIDEEEAAAAPEAETER 164
Query: 123 YICPPEIKITIKQSGDQKVSRAGKNSKATKEEE 155
E K ++ G + R G+ A +EE
Sbjct: 165 VEGEEEDKEETQRDGAESKERDGEGRPAKSQEE 197
>gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)
[Homo sapiens]
Length = 731
Score = 37.0 bits (84), Expect = 0.015
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 53 ERMEPEEEDELGSGRDVDSNSNADSEKWVAGDGLEE-----QEFSIKEANFTEGSLKLKI 107
E EEE+E RD S+++ E+ G+ + E K F + + K
Sbjct: 560 ESFSDEEEEEQEQQRDDAEESSSEPEEENVGNDTKAVIKALDEKIAKYQKFLDKAKAKKF 619
Query: 108 QTTKRAKKPPKNLENYICPPEIKITIKQSGDQKV-SRAGKNSKATKEEERSHSKK 161
+ +K + + + P E + T+++ D + S+ GK KA +EEE+ HS K
Sbjct: 620 SAVRISKGLSEKI--FAKPEEQRKTLEEDVDDRAPSKKGKKRKAQREEEQEHSNK 672
>gi|150456444 hypothetical protein LOC57578 [Homo sapiens]
Length = 2458
Score = 36.6 bits (83), Expect = 0.020
Identities = 53/224 (23%), Positives = 79/224 (35%), Gaps = 38/224 (16%)
Query: 6 TLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERME----PEEED 61
TL R +S LP S PG GE PG+ +P G + PE+ +
Sbjct: 1565 TLKQKRDLLQKSFALPEMSLDDHPDPGTEGEK------PGELMPSSGAKTVLLKVPEDAE 1618
Query: 62 ELGSGRDVDSNSNADSE----KWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPP 117
D+++ +D+E + V DG EE EF KIQ R +K
Sbjct: 1619 NPTESEKPDTSAESDTEQNPERKVEEDGAEESEF--------------KIQIVPRQRKQR 1664
Query: 118 KNLENYICPPEIKIT---IKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDL 174
K + I + I+ + + G+QK +T E R S L A S
Sbjct: 1665 KIAVSAIQREYLDISFNILDKLGEQKDPDPSTKGLSTLEMPRESSSAPTLDAGVPETSSH 1724
Query: 175 KGFQPQIKDSSKEEVWKRRGGQGIPFKKQFLSQERAMCFSCPRN 218
Q + +RG G+ Q + ++ S P N
Sbjct: 1725 SSISTQYRQ-------MKRGSLGVLTMSQLMKRQLEHQSSAPHN 1761
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 35.4 bits (80), Expect = 0.045
Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 29/195 (14%)
Query: 36 EPLLSTPGPGKG----IPVGGERM---EPEEEDELGSGRDVDSNSNADSEKWVAGDGLEE 88
E + +TP GK +PV + + E EEED+ D D + D ++ + EE
Sbjct: 209 EAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEE 268
Query: 89 QEFSIKEANFTEGSLKLKIQTTKRAKKPP--------------KNLENYICPPEIKITIK 134
+E +KEA K + AKK NL PE+K I
Sbjct: 269 EEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGIS 328
Query: 135 Q--------SGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSK 186
D ++ K E K LT + +++K +P+ KDS K
Sbjct: 329 DVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKK 388
Query: 187 EEVWKRRGGQGIPFK 201
E + + +P+K
Sbjct: 389 ERDARTLLAKNLPYK 403
>gi|5454102 transforming, acidic coiled-coil containing protein 3
[Homo sapiens]
Length = 838
Score = 34.7 bits (78), Expect = 0.077
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 16/139 (11%)
Query: 12 QRGGESDFLPVSSAKPPAAP--GCAGEPLLSTPGPGKGIPVG-GERMEPEEEDELGSGRD 68
+ GG V+++ P A P C G PL PG G P G G + + L
Sbjct: 237 RHGGVCAPAAVATSPPGAIPKEACGGAPLQGLPGEALGCPAGVGTPVPADGTQTLTCAHT 296
Query: 69 VDSNSNADSEKWVAGDGL-----EEQEFSIKEANFTEGSLKLKIQ-----TTKRAKKPPK 118
S A + VAG + EE ++ G +KL+ T+KRA PP+
Sbjct: 297 SAPESTAPTNHLVAGRAMTLSPQEEVAAGQMASSSRSGPVKLEFDVSDGATSKRA-PPPR 355
Query: 119 NL--ENYICPPEIKITIKQ 135
L + + PP K ++Q
Sbjct: 356 RLGERSGLKPPLRKAAVRQ 374
>gi|192807336 arsenate resistance protein 2 isoform e [Homo sapiens]
Length = 871
Score = 34.3 bits (77), Expect = 0.10
Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 38/180 (21%)
Query: 14 GGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEEDELGSGRDVDSNS 73
G E+D + + G GEP G GER +++++ G+ +++S
Sbjct: 260 GTENDLRILEQEEEEEQAGKPGEPSKKEEGRAGAGLGDGERKTNDKDEKKEDGKQAENDS 319
Query: 74 -NADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKIT 132
N D K GDG +E++ K + K AKK K K
Sbjct: 320 SNDDKTKKSEGDGDKEEK---------------KEDSEKEAKKSSK-----------KRN 353
Query: 133 IKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSKEEVWKR 192
K SGD G S++ E E ++++ A L + K+ KEE W++
Sbjct: 354 RKHSGDDSFDE-GSVSESESESESGQAEEEKEEAEAL----------KEKEKPKEEEWEK 402
>gi|192807334 arsenate resistance protein 2 isoform d [Homo sapiens]
Length = 872
Score = 34.3 bits (77), Expect = 0.10
Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 37/180 (20%)
Query: 14 GGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEEDELGSGRDVDSNS 73
G E+D + + G GEP G GER +++++ G+ +++S
Sbjct: 260 GTENDLRILEQEEEEEQAGKPGEPSKKEEGRAGAGLGDGERKTNDKDEKKEDGKQAENDS 319
Query: 74 -NADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKIT 132
N D K GDG +E++ K + K AKK K K
Sbjct: 320 SNDDKTKKSEGDGDKEEK---------------KEDSEKEAKKSSK-----------KRN 353
Query: 133 IKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSKEEVWKR 192
K SGD G S++ E E ++++ A + K+ KEE W++
Sbjct: 354 RKHSGDDSFDE-GSVSESESESESGQAEEEKEEAEEALKE---------KEKPKEEEWEK 403
>gi|192807332 arsenate resistance protein 2 isoform c [Homo sapiens]
Length = 875
Score = 34.3 bits (77), Expect = 0.10
Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 38/180 (21%)
Query: 14 GGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEEDELGSGRDVDSNS 73
G E+D + + G GEP G GER +++++ G+ +++S
Sbjct: 260 GTENDLRILEQEEEEEQAGKPGEPSKKEEGRAGAGLGDGERKTNDKDEKKEDGKQAENDS 319
Query: 74 -NADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKIT 132
N D K GDG +E++ K + K AKK K K
Sbjct: 320 SNDDKTKKSEGDGDKEEK---------------KEDSEKEAKKSSK-----------KRN 353
Query: 133 IKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSKEEVWKR 192
K SGD G S++ E E ++++ A L + K+ KEE W++
Sbjct: 354 RKHSGDDSFDE-GSVSESESESESGQAEEEKEEAEAL----------KEKEKPKEEEWEK 402
>gi|58331218 arsenate resistance protein 2 isoform a [Homo sapiens]
Length = 876
Score = 34.3 bits (77), Expect = 0.10
Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 37/180 (20%)
Query: 14 GGESDFLPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEEDELGSGRDVDSNS 73
G E+D + + G GEP G GER +++++ G+ +++S
Sbjct: 260 GTENDLRILEQEEEEEQAGKPGEPSKKEEGRAGAGLGDGERKTNDKDEKKEDGKQAENDS 319
Query: 74 -NADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKIT 132
N D K GDG +E++ K + K AKK K K
Sbjct: 320 SNDDKTKKSEGDGDKEEK---------------KEDSEKEAKKSSK-----------KRN 353
Query: 133 IKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSKEEVWKR 192
K SGD G S++ E E ++++ A + K+ KEE W++
Sbjct: 354 RKHSGDDSFDE-GSVSESESESESGQAEEEKEEAEEALKE---------KEKPKEEEWEK 403
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 24 SAKPPAAPGCAGEPLL-------STPGPGKGIPVGGERMEPEEEDELGSGRDVDSNSNAD 76
S P PG G PLL S PG G+G GE+ EP E G+ + +
Sbjct: 20 SPDPEERPGAEGAPLLPPPLPPPSPPGSGRGPGASGEQPEPGEAAAGGAAEE----ARRL 75
Query: 77 SEKWVAGDGLEE 88
++W G GLEE
Sbjct: 76 EQRW--GFGLEE 85
>gi|112807226 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 33.5 bits (75), Expect = 0.17
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 4/156 (2%)
Query: 68 DVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPP 127
DVD++ +++ V D Q+F E + +++ + K+P K E + P
Sbjct: 890 DVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEV--P 947
Query: 128 EIKITIKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSKE 187
EI+ +Q ++ SR KAT+ + + S +L ++ Q + +E
Sbjct: 948 EIQEKEEQEEGRERSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPRE 1007
Query: 188 EVWKRRGGQGIPFKKQFLSQERAMCFSCPRNPFPAK 223
K R + +PF ++ E N FP K
Sbjct: 1008 GTGKSR--RALPFSEKKKKTETFSKTQNQENTFPCK 1041
>gi|44890062 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 33.5 bits (75), Expect = 0.17
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 4/156 (2%)
Query: 68 DVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPP 127
DVD++ +++ V D Q+F E + +++ + K+P K E + P
Sbjct: 890 DVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEV--P 947
Query: 128 EIKITIKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSKE 187
EI+ +Q ++ SR KAT+ + + S +L ++ Q + +E
Sbjct: 948 EIQEKEEQEEGRERSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPRE 1007
Query: 188 EVWKRRGGQGIPFKKQFLSQERAMCFSCPRNPFPAK 223
K R + +PF ++ E N FP K
Sbjct: 1008 GTGKSR--RALPFSEKKKKTETFSKTQNQENTFPCK 1041
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 33.1 bits (74), Expect = 0.22
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 20 LPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEEDELGSGRDVDSNSNADSEK 79
LPVS+A PP G S+ + E EEEDE + +S+++ E+
Sbjct: 463 LPVSTAMPP------GLAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESESSDSEEER 516
Query: 80 WVAGDGLEEQEFSIKE--ANFTEGSL-KLKIQTTKRAKKPPKNLENYICPPEIKITIKQS 136
L+EQ ++ E A ++G + K K + K+ KK + E K
Sbjct: 517 AHRLAELQEQLRAVHEQLAALSQGPISKPKRKREKKEKKKKRKAE------------KHR 564
Query: 137 GDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQP 179
G K +A + + SKK + AA GF P
Sbjct: 565 GRAGADEDDKGPRAPRPPQPKKSKKASGSGGGSAALGPSGFGP 607
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 33.1 bits (74), Expect = 0.22
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 20 LPVSSAKPPAAPGCAGEPLLSTPGPGKGIPVGGERMEPEEEDELGSGRDVDSNSNADSEK 79
LPVS+A PP G S+ + E EEEDE + +S+++ E+
Sbjct: 463 LPVSTAMPP------GLAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESESSDSEEER 516
Query: 80 WVAGDGLEEQEFSIKE--ANFTEGSL-KLKIQTTKRAKKPPKNLENYICPPEIKITIKQS 136
L+EQ ++ E A ++G + K K + K+ KK + E K
Sbjct: 517 AHRLAELQEQLRAVHEQLAALSQGPISKPKRKREKKEKKKKRKAE------------KHR 564
Query: 137 GDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAASDLKGFQP 179
G K +A + + SKK + AA GF P
Sbjct: 565 GRAGADEDDKGPRAPRPPQPKKSKKASGSGGGSAALGPSGFGP 607
>gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens]
Length = 1256
Score = 32.7 bits (73), Expect = 0.29
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 95 EANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKITIKQSGDQKVSRAGKNSKATKEE 154
EAN I TT + P N + + +IK++ K + + +V + K A +E
Sbjct: 25 EANSNSKDNDKNITTTSQKNSAPFNRQKHKEFSDIKLSGKNTHEAEVLLSPKKVMAREEM 84
Query: 155 ERSHSKKKLLTASD---LAASDLKGFQPQI--KDSSKEEVWKRRGGQGIPFKKQ 203
E+ +SK L D S L+ + Q+ +SSKE V K G P K+
Sbjct: 85 EKLNSKGILQVLPDEITFPLSPLRKYTYQLPGNESSKENVEKNTEGIVTPVFKE 138
>gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens]
Length = 1272
Score = 32.7 bits (73), Expect = 0.29
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 95 EANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKITIKQSGDQKVSRAGKNSKATKEE 154
EAN I TT + P N + + +IK++ K + + +V + K A +E
Sbjct: 25 EANSNSKDNDKNITTTSQKNSAPFNRQKHKEFSDIKLSGKNTHEAEVLLSPKKVMAREEM 84
Query: 155 ERSHSKKKLLTASD---LAASDLKGFQPQI--KDSSKEEVWKRRGGQGIPFKKQ 203
E+ +SK L D S L+ + Q+ +SSKE V K G P K+
Sbjct: 85 EKLNSKGILQVLPDEITFPLSPLRKYTYQLPGNESSKENVEKNTEGIVTPVFKE 138
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 32.7 bits (73), Expect = 0.29
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 21/159 (13%)
Query: 86 LEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKITIKQSGDQKVSRAG 145
LE++ + A + +K +T KR ++ EIK+ I ++ +++ G
Sbjct: 331 LEKKNYVHFAATQVQNRIKEVNETNKRVEQ------------EIKVAIFTLINE-INKKG 377
Query: 146 KNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSKEEVWKRRGGQG--IPFKKQ 203
K+ E + KLL + D+ G Q+K W G + + K+
Sbjct: 378 KSLLQQLENVTKERQMKLLQQQN----DITGLSRQVKHVMNFTNWAIASGSSTALLYSKR 433
Query: 204 FLSQERAMCFSCPRNPFPAKPGSLTLPFHSEPAVWAQEV 242
++ + +P PA G++ FH +P WA+ V
Sbjct: 434 LITFQLRHILKARCDPVPAANGAIR--FHCDPTFWAKNV 470
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 32.7 bits (73), Expect = 0.29
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 21/159 (13%)
Query: 86 LEEQEFSIKEANFTEGSLKLKIQTTKRAKKPPKNLENYICPPEIKITIKQSGDQKVSRAG 145
LE++ + A + +K +T KR ++ EIK+ I ++ +++ G
Sbjct: 331 LEKKNYVHFAATQVQNRIKEVNETNKRVEQ------------EIKVAIFTLINE-INKKG 377
Query: 146 KNSKATKEEERSHSKKKLLTASDLAASDLKGFQPQIKDSSKEEVWKRRGGQG--IPFKKQ 203
K+ E + KLL + D+ G Q+K W G + + K+
Sbjct: 378 KSLLQQLENVTKERQMKLLQQQN----DITGLSRQVKHVMNFTNWAIASGSSTALLYSKR 433
Query: 204 FLSQERAMCFSCPRNPFPAKPGSLTLPFHSEPAVWAQEV 242
++ + +P PA G++ FH +P WA+ V
Sbjct: 434 LITFQLRHILKARCDPVPAANGAIR--FHCDPTFWAKNV 470
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 32.7 bits (73), Expect = 0.29
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 84 DGLEEQEFSIKEANFTEGSLKLKIQTTKR----AKKPPKNLENYICPPEIKITIKQSGDQ 139
D +EE+ +K + +E K K++ ++ K+ K L+ P + K+ + +
Sbjct: 1487 DSMEEKPLKVKGKDSSEKKRKRKLEKVEQLFGEGKQKSKELKKMDKPRKKKLKLGADKSK 1546
Query: 140 KVSRAGKNSKATKEEERSHSKKKLLTA 166
++++ K K KEEER K+K A
Sbjct: 1547 ELNKLAK--KLAKEEERKKKKEKAAAA 1571
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 32.7 bits (73), Expect = 0.29
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 84 DGLEEQEFSIKEANFTEGSLKLKIQTTKR----AKKPPKNLENYICPPEIKITIKQSGDQ 139
D +EE+ +K + +E K K++ ++ K+ K L+ P + K+ + +
Sbjct: 1492 DSMEEKPLKVKGKDSSEKKRKRKLEKVEQLFGEGKQKSKELKKMDKPRKKKLKLGADKSK 1551
Query: 140 KVSRAGKNSKATKEEERSHSKKKLLTA 166
++++ K K KEEER K+K A
Sbjct: 1552 ELNKLAK--KLAKEEERKKKKEKAAAA 1576
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 32.3 bits (72), Expect = 0.38
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 43 GPGKGIPVGGERMEPEEEDELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGS 102
GP ER EE++EL + DS+ +++KW G + +E E
Sbjct: 319 GPPPPQKPDAERQTDEEKEELKKPKKEDSSPKEETDKWAVEKGKDHKEPRKGE------E 372
Query: 103 LKLKIQTTKRAKKPPKNLENY 123
L+ + T++ K PP +E++
Sbjct: 373 LEEEWTPTEKVKCPPIGMESH 393
>gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo
sapiens]
Length = 783
Score = 32.3 bits (72), Expect = 0.38
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 22/169 (13%)
Query: 5 ETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPL-LSTPG-------PGKGIPVGGERME 56
+T S + G++ + S PP + + PL S P P + I +
Sbjct: 373 KTSSGNSTSKGQTSYSTTSLPPPPPSHPASQPPLPASHPSQPPVPSLPPRNIKPPFDLKS 432
Query: 57 PEEEDELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKP 116
P ED D N D E+ G+ E+ E S + E K +++ K+ +K
Sbjct: 433 PVNEDNQDGVTHSDGAGNLDEEQDSEGETYEDIEASKEREKKREKEEKKRLELEKKEQKE 492
Query: 117 PKNLENYICPPEIKITIKQSGDQKV---------SRAGKNSKATKEEER 156
+ E EIK K +G +V + GKN + K+ E+
Sbjct: 493 KEKKEQ-----EIKKKFKLTGPIQVIHLAKACCDVKGGKNELSFKQGEQ 536
>gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo
sapiens]
Length = 829
Score = 32.3 bits (72), Expect = 0.38
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 22/169 (13%)
Query: 5 ETLSSSRQRGGESDFLPVSSAKPPAAPGCAGEPL-LSTPG-------PGKGIPVGGERME 56
+T S + G++ + S PP + + PL S P P + I +
Sbjct: 373 KTSSGNSTSKGQTSYSTTSLPPPPPSHPASQPPLPASHPSQPPVPSLPPRNIKPPFDLKS 432
Query: 57 PEEEDELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKP 116
P ED D N D E+ G+ E+ E S + E K +++ K+ +K
Sbjct: 433 PVNEDNQDGVTHSDGAGNLDEEQDSEGETYEDIEASKEREKKREKEEKKRLELEKKEQKE 492
Query: 117 PKNLENYICPPEIKITIKQSGDQKV---------SRAGKNSKATKEEER 156
+ E EIK K +G +V + GKN + K+ E+
Sbjct: 493 KEKKEQ-----EIKKKFKLTGPIQVIHLAKACCDVKGGKNELSFKQGEQ 536
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 32.0 bits (71), Expect = 0.50
Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 58 EEEDELGSGRDVDSNSNADSEKWVAGDGLEEQEFSIKEANFTEGSLKLKIQTTKRAKKPP 117
EE +E S + N N D ++G G + T S K K + R+K+ P
Sbjct: 27 EESEETSSPPRLAMNQNTDK---ISGSGSNSDMMENSKEEGTSSSEKSKSSGSSRSKRKP 83
Query: 118 KNLENYICPPEIKITIKQSGDQKVSRAGKNSKATKEEERSHSKKKLLTASDLAAS----D 173
+ Y+ + K ++ ++ S + T + S K ++ + + D
Sbjct: 84 SIVTKYVESDDEKPLDDETVNEDASNENSENDITMQ---SLPKGTVIVQPEPVLNEDKDD 140
Query: 174 LKGFQPQIKDSSKEEVWKRRGGQGI 198
KG + + + K E K+RG G+
Sbjct: 141 FKGPEFRSRSKMKTENLKKRGEDGL 165
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 32.0 bits (71), Expect = 0.50
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 10 SRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPG---KGIPVGGERMEPEEEDELGSG 66
S RGG P S+ PP P S+PGPG +GI G RM P+ + L
Sbjct: 367 SSSRGGR----PGLSSLPPRGPHHLDN---SSPGPGSEARGINGGPSRMSPKAQRPLRGA 419
Query: 67 RDVDSNSNADS 77
+ + S SN S
Sbjct: 420 KTLSSPSNRPS 430
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 32.0 bits (71), Expect = 0.50
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 10 SRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPG---KGIPVGGERMEPEEEDELGSG 66
S RGG P S+ PP P S+PGPG +GI G RM P+ + L
Sbjct: 367 SSSRGGR----PGLSSLPPRGPHHLDN---SSPGPGSEARGINGGPSRMSPKAQRPLRGA 419
Query: 67 RDVDSNSNADS 77
+ + S SN S
Sbjct: 420 KTLSSPSNRPS 430
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 32.0 bits (71), Expect = 0.50
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 10 SRQRGGESDFLPVSSAKPPAAPGCAGEPLLSTPGPG---KGIPVGGERMEPEEEDELGSG 66
S RGG P S+ PP P S+PGPG +GI G RM P+ + L
Sbjct: 367 SSSRGGR----PGLSSLPPRGPHHLDN---SSPGPGSEARGINGGPSRMSPKAQRPLRGA 419
Query: 67 RDVDSNSNADS 77
+ + S SN S
Sbjct: 420 KTLSSPSNRPS 430
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,708,910
Number of Sequences: 37866
Number of extensions: 645317
Number of successful extensions: 3119
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 2967
Number of HSP's gapped (non-prelim): 344
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.