Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 113420249

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113420249 PREDICTED: hypothetical protein LOC728071 [Homo
sapiens]
         (390 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113420249 PREDICTED: hypothetical protein LOC728071 [Homo sap...   780   0.0  
gi|13124773 brain protein 16 [Homo sapiens]                           778   0.0  
gi|130502162 RAS protein activator like 3 [Homo sapiens]               37   0.023
gi|110349792 growth differentiation factor 1 [Homo sapiens]            37   0.031
gi|239755939 PREDICTED: hypothetical protein [Homo sapiens]            34   0.20 
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap...    34   0.20 
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]     34   0.20 
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]    34   0.20 
gi|226437579 NAC alpha domain containing [Homo sapiens]                33   0.34 
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   0.34 
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   0.34 
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   0.34 
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   0.34 
gi|207452735 epiplakin 1 [Homo sapiens]                                33   0.34 
gi|130980075 centromere protein J [Homo sapiens]                       33   0.58 
gi|5454158 valyl-tRNA synthetase [Homo sapiens]                        33   0.58 
gi|157266298 anti-Mullerian hormone [Homo sapiens]                     32   0.75 
gi|39777606 Rho guanine nucleotide exchange factor 1 isoform 1 [...    32   0.75 
gi|39777604 Rho guanine nucleotide exchange factor 1 isoform 3 [...    32   0.75 
gi|15011972 Rho guanine nucleotide exchange factor 1 isoform 2 [...    32   0.75 
gi|37693995 Kruppel-like factor 13 [Homo sapiens]                      32   0.75 
gi|149999371 hypothetical protein LOC91056 [Homo sapiens]              32   0.75 
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ...    32   0.98 
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ...    32   0.98 
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]            32   1.3  
gi|208609985 SH2 domain containing 3A [Homo sapiens]                   32   1.3  
gi|10140847 homeobox A2 [Homo sapiens]                                 31   2.2  
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]            31   2.2  
gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens]           31   2.2  
gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo ...    31   2.2  

>gi|113420249 PREDICTED: hypothetical protein LOC728071 [Homo
           sapiens]
          Length = 390

 Score =  780 bits (2013), Expect = 0.0
 Identities = 390/390 (100%), Positives = 390/390 (100%)

Query: 1   MGEAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAG 60
           MGEAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAG
Sbjct: 1   MGEAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAG 60

Query: 61  QAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPW 120
           QAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPW
Sbjct: 61  QAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPW 120

Query: 121 AEEAAAALANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLL 180
           AEEAAAALANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLL
Sbjct: 121 AEEAAAALANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLL 180

Query: 181 SNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGP 240
           SNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGP
Sbjct: 181 SNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGP 240

Query: 241 EVDILPFLLLPLAGPEDFSEEEMQRLPVDLQYLPPDKQREPDADIRKMLVEAIMLLTATA 300
           EVDILPFLLLPLAGPEDFSEEEMQRLPVDLQYLPPDKQREPDADIRKMLVEAIMLLTATA
Sbjct: 241 EVDILPFLLLPLAGPEDFSEEEMQRLPVDLQYLPPDKQREPDADIRKMLVEAIMLLTATA 300

Query: 301 PGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLIGDEPERGMENLLEVQVPEDVE 360
           PGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLIGDEPERGMENLLEVQVPEDVE
Sbjct: 301 PGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLIGDEPERGMENLLEVQVPEDVE 360

Query: 361 QQLQQLDCREQEQLERELAPEPWVERATPT 390
           QQLQQLDCREQEQLERELAPEPWVERATPT
Sbjct: 361 QQLQQLDCREQEQLERELAPEPWVERATPT 390


>gi|13124773 brain protein 16 [Homo sapiens]
          Length = 390

 Score =  778 bits (2010), Expect = 0.0
 Identities = 389/390 (99%), Positives = 390/390 (100%)

Query: 1   MGEAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAG 60
           MGEAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAG
Sbjct: 1   MGEAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAG 60

Query: 61  QAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPW 120
           QAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPW
Sbjct: 61  QAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPW 120

Query: 121 AEEAAAALANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLL 180
           AEEAAAALANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLL
Sbjct: 121 AEEAAAALANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLL 180

Query: 181 SNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGP 240
           SNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGP
Sbjct: 181 SNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGP 240

Query: 241 EVDILPFLLLPLAGPEDFSEEEMQRLPVDLQYLPPDKQREPDADIRKMLVEAIMLLTATA 300
           EVDILPFLLLPLAGPEDFSEEEM+RLPVDLQYLPPDKQREPDADIRKMLVEAIMLLTATA
Sbjct: 241 EVDILPFLLLPLAGPEDFSEEEMERLPVDLQYLPPDKQREPDADIRKMLVEAIMLLTATA 300

Query: 301 PGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLIGDEPERGMENLLEVQVPEDVE 360
           PGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLIGDEPERGMENLLEVQVPEDVE
Sbjct: 301 PGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLIGDEPERGMENLLEVQVPEDVE 360

Query: 361 QQLQQLDCREQEQLERELAPEPWVERATPT 390
           QQLQQLDCREQEQLERELAPEPWVERATPT
Sbjct: 361 QQLQQLDCREQEQLERELAPEPWVERATPT 390


>gi|130502162 RAS protein activator like 3 [Homo sapiens]
          Length = 1011

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 65/219 (29%), Positives = 80/219 (36%), Gaps = 46/219 (21%)

Query: 41  AVRHVLALTGCGPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADPG------L 94
           A R  L L G GPG A+L G+ AL  AL EL    APA    R    L A  G      +
Sbjct: 363 ARRLSLRLRGLGPGSAVL-GRVAL--ALEELDAPRAPAAGLERWFPLLGAPAGAALRARI 419

Query: 95  HETLLAADPGLP------------ARLMGRALDPQWP--WAEEAAAALANLSREPAPCAA 140
               L   P               ARL G AL+P  P    EE AAA+  + R      A
Sbjct: 420 RARRLRVLPSERYKELAEFLTFHYARLCG-ALEPALPAQAKEELAAAMVRVLRATGRAQA 478

Query: 141 LMAALAAAEPADSG-------LERLVRALCTPGYNARAPLHYLAPLLSNLSQRPAARA-- 191
           L+  L  AE A  G        E  +       Y       YL   L  + +R  A    
Sbjct: 479 LVTDLGTAELARCGGREALLFRENTLATKAIDEYMKLVAQDYLQETLGQVVRRLCASTED 538

Query: 192 FLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFE 230
             +DP +C      P ++ P+   R       LRN C E
Sbjct: 539 CEVDPSKC------PASELPEHQAR-------LRNSCEE 564


>gi|110349792 growth differentiation factor 1 [Homo sapiens]
          Length = 372

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 53/192 (27%), Positives = 73/192 (38%), Gaps = 41/192 (21%)

Query: 1   MGEAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAA----------VRHVLALTG 50
           + +AG GAGA  GP       + +L+P L P  RA+L  AA          +R  LAL  
Sbjct: 167 VAQAGQGAGADPGP-----VLLRQLVPALGPPVRAELLGAAWARNASWPRSLRLALALRP 221

Query: 51  CGPGRALLAGQAALLQALME---LAPASAPARDA-------------ARALVNLAADPGL 94
             P       +A+LL   ++     P + P RDA             AR L     + G 
Sbjct: 222 RAPAACARLAEASLLLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYVSFREVGW 281

Query: 95  HETLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPA-PCAALMAALAAAEPADS 153
           H  ++A    L     G+   P          AL+     PA   A L A + AA P  +
Sbjct: 282 HRWVIAPRGFLANYCQGQCALP---------VALSGSGGPPALNHAVLRALMHAAAPGAA 332

Query: 154 GLERLVRALCTP 165
            L   V A  +P
Sbjct: 333 DLPCCVPARLSP 344



 Score = 36.6 bits (83), Expect = 0.040
 Identities = 46/169 (27%), Positives = 58/169 (34%), Gaps = 13/169 (7%)

Query: 15  EASPEAEVVKLLPFLAPGARADLQAAAVRH------VLALTGCGPGRALLAGQAAL-LQA 67
           E      +V+ +P      RA   A+A  H      V  L+   P       +  L   A
Sbjct: 94  ELGVAGNIVRHIPDRGAPTRASEPASAAGHCPEWTVVFDLSAVEPAERPSRARLELRFAA 153

Query: 68  LMELAPASAPARDAARALVNLAADPG---LHETLLAADPGLPARLMGRALDPQWPWAEEA 124
               AP        A+A     ADPG   L + + A  P + A L+G A      W    
Sbjct: 154 AAAAAPEGGWELSVAQAGQGAGADPGPVLLRQLVPALGPPVRAELLGAAWARNASWPRSL 213

Query: 125 AAALANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPL 173
             ALA   R PA CA L  A       D    RL   L  P  +A   L
Sbjct: 214 RLALALRPRAPAACARLAEASLLLVTLD---PRLCHPLARPRRDAEPVL 259


>gi|239755939 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 313

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 50/172 (29%), Positives = 68/172 (39%), Gaps = 24/172 (13%)

Query: 37  LQAAAVRHVLALTGCGPGRALLAGQAAL----LQALMELAPASAPARDAARALVNLAADP 92
           L A  VR    +   GP R   +GQA L    L+ L  LAP  A  RD  +       D 
Sbjct: 110 LSAGRVREKRGVGAGGPVRP--SGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDV 167

Query: 93  -GL-----HETLLAADPGLPARLMGRAL----DPQWPWAEEAAAALANLSREPAPCAALM 142
            G+     H+  L+ +      L G AL    D    W     A     + +  P   L 
Sbjct: 168 LGIVHHLGHQHQLSVECVKSLPLHGPALRRQNDKHMSWGRTLRA-----TAQMPPNTFLC 222

Query: 143 AALAAAEPADSGLERLV---RALCTPGYNARAPLHYLAPLLSNLSQRPAARA 191
           A L+ + P  S L+ ++   R L  PG+ ARAP+   +P   N    PA  A
Sbjct: 223 ARLSFSPPQASRLKHVLEPARDLLPPGHKARAPIPLRSPTHRNARVLPAPSA 274


>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
           sapiens]
          Length = 288

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 50/189 (26%), Positives = 74/189 (39%), Gaps = 32/189 (16%)

Query: 10  ASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAGQAALLQALM 69
           A+G P A+P A        + P A AD  AA+      L    P  A+ A   A ++   
Sbjct: 109 AAGPPAAAPAA--------VCPAA-ADPSAAS------LCAASPPAAVPAAVPAAVRP-- 151

Query: 70  ELAPASAPARDAARALVNLAADPGLHETLLAADP--GLPARLMGRALDPQWPWAEEAAAA 127
              PA+ P   A  A+   AADP    +L AA P   +PA     A+ P         AA
Sbjct: 152 ---PAAGPPAAALAAVYPAAADPSA-ASLCAASPLAAVPAAASPAAVAP---------AA 198

Query: 128 LANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLLSNLSQRP 187
           +   +  P+  +   A+  AA PA +           P   ARA     A  + ++++ P
Sbjct: 199 VCPGAAGPSAASLCAASQPAAVPAAASPAAAAPLAVNPAAAARAAAAPAAACVQSVAESP 258

Query: 188 AARAFLLDP 196
           A    +  P
Sbjct: 259 ATPLAIAQP 267



 Score = 33.1 bits (74), Expect = 0.44
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 73  PASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPWAEEAAAALANL- 131
           PA+ P   A  A+   AADP       A+ P      +  A+ P  P A   AAALA + 
Sbjct: 108 PAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAAVPAAVRP--PAAGPPAAALAAVY 165

Query: 132 --SREPAPCAALMAALAAAEPADSGLERLVRALCTPG 166
             + +P+  +   A+  AA PA +    +  A   PG
Sbjct: 166 PAAADPSAASLCAASPLAAVPAAASPAAVAPAAVCPG 202


>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
          Length = 725

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 112/463 (24%), Positives = 155/463 (33%), Gaps = 107/463 (23%)

Query: 1   MGEAGAGAGASGGPEASPEAEVVKLL-PFLAPGARADLQAAAVRHVLALTGCGPGRALLA 59
           + +  A AG + G E  P      L    LA   R    A  +    A  G  P  ALL 
Sbjct: 16  LAQLAAAAGEALGGEKDPATNETPLSRALLALRTRHIKAAGGIERFRARGGLRPLLALLR 75

Query: 60  GQAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMG-------- 111
             AA   A  +  P SAP+  A+ A     A       + ++ P  P RL          
Sbjct: 76  RAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVSSSSPTPPVRLRKTLDLALSI 135

Query: 112 --------------RALDPQWPWA------------EEAAAALANLSREPAPCA------ 139
                         R L    P                 A AL NL+ EP  C       
Sbjct: 136 LADCCTEGACRTEVRRLGGILPLVTILQCMKTDSIQNRTARALGNLAMEPESCGDIHCAG 195

Query: 140 ---ALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLLSNLSQRPAARAFLLDP 196
               L+ +L A + +   L+ +VRAL      A +P H LA L    + RP A      P
Sbjct: 196 AVPLLVESLTACQDSQC-LQSVVRALRN---LADSPQHRLA-LAQQGAVRPLAELLATAP 250

Query: 197 D--------------------RCVVQ--------RLLPLTQYPDSSVRRGGVVGTLRNCC 228
           D                     C  Q         L+ L  +P  +VR G ++  L N C
Sbjct: 251 DAALTLALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHPKRAVREGTIL-ILANLC 309

Query: 229 FEHRHHEWLLGPEVDILPFLLLPLAGPEDFSEEEMQRLPVDLQYLPPDKQREPDADIRKM 288
                 + L+ P        L    G E   +E  QR   D     P  Q+         
Sbjct: 310 -----AQGLIRP-------ALGNAGGVEVLVDELRQRR--DPNGASPTSQQP-------- 347

Query: 289 LVEAIMLLTATAPGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLIGDEPERGME 348
           LV A+ LL   A  R ++RD G   +L  L     +P       +++  L+G   + G  
Sbjct: 348 LVRAVCLLCREAINRARLRDAGGLDLLMGLLR---DPRASAWHPRIVAALVGFLYDTGA- 403

Query: 349 NLLEVQVPEDVEQQLQQL--DCREQEQLERELAPEPWVERATP 389
            L  +Q    V     QL  +  E+E+  RE A   + E  TP
Sbjct: 404 -LGRLQALGLVPLLAGQLCGEAGEEEEEGREAASWDFPEERTP 445


>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
          Length = 935

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 112/463 (24%), Positives = 155/463 (33%), Gaps = 107/463 (23%)

Query: 1   MGEAGAGAGASGGPEASPEAEVVKLL-PFLAPGARADLQAAAVRHVLALTGCGPGRALLA 59
           + +  A AG + G E  P      L    LA   R    A  +    A  G  P  ALL 
Sbjct: 16  LAQLAAAAGEALGGEKDPATNETPLSRALLALRTRHIKAAGGIERFRARGGLRPLLALLR 75

Query: 60  GQAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMG-------- 111
             AA   A  +  P SAP+  A+ A     A       + ++ P  P RL          
Sbjct: 76  RAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVSSSSPTPPVRLRKTLDLALSI 135

Query: 112 --------------RALDPQWPWA------------EEAAAALANLSREPAPCA------ 139
                         R L    P                 A AL NL+ EP  C       
Sbjct: 136 LADCCTEGACRTEVRRLGGILPLVTILQCMKTDSIQNRTARALGNLAMEPESCGDIHCAG 195

Query: 140 ---ALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLLSNLSQRPAARAFLLDP 196
               L+ +L A + +   L+ +VRAL      A +P H LA L    + RP A      P
Sbjct: 196 AVPLLVESLTACQDSQC-LQSVVRALRN---LADSPQHRLA-LAQQGAVRPLAELLATAP 250

Query: 197 D--------------------RCVVQ--------RLLPLTQYPDSSVRRGGVVGTLRNCC 228
           D                     C  Q         L+ L  +P  +VR G ++  L N C
Sbjct: 251 DAALTLALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHPKRAVREGTIL-ILANLC 309

Query: 229 FEHRHHEWLLGPEVDILPFLLLPLAGPEDFSEEEMQRLPVDLQYLPPDKQREPDADIRKM 288
                 + L+ P        L    G E   +E  QR   D     P  Q+         
Sbjct: 310 -----AQGLIRP-------ALGNAGGVEVLVDELRQRR--DPNGASPTSQQP-------- 347

Query: 289 LVEAIMLLTATAPGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLIGDEPERGME 348
           LV A+ LL   A  R ++RD G   +L  L     +P       +++  L+G   + G  
Sbjct: 348 LVRAVCLLCREAINRARLRDAGGLDLLMGLLR---DPRASAWHPRIVAALVGFLYDTGA- 403

Query: 349 NLLEVQVPEDVEQQLQQL--DCREQEQLERELAPEPWVERATP 389
            L  +Q    V     QL  +  E+E+  RE A   + E  TP
Sbjct: 404 -LGRLQALGLVPLLAGQLCGEAGEEEEEGREAASWDFPEERTP 445


>gi|226437579 NAC alpha domain containing [Homo sapiens]
          Length = 1562

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 37/133 (27%), Positives = 50/133 (37%), Gaps = 20/133 (15%)

Query: 37   LQAAAVRHVLALTGCGPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADPGLHE 96
            L  A  + + A  GC PG   +A  A   Q  +  A    PA +   A +    +P   +
Sbjct: 940  LAVATPQTLQAEAGCAPGTEPVATMA---QQEVGEALGPRPAPEEKNAALPTVPEPAALD 996

Query: 97   TLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPCAALMAALAAAEPADSGLE 156
             +   DP  PA   G       PWA          ++E A     M AL+  EPA    E
Sbjct: 997  QVQQDDPQ-PAAEAGT------PWA----------AQEDADSTLGMEALSLPEPASGAGE 1039

Query: 157  RLVRALCTPGYNA 169
             +  AL  PG  A
Sbjct: 1040 EIAEALSRPGREA 1052


>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 37/133 (27%), Positives = 50/133 (37%), Gaps = 20/133 (15%)

Query: 37   LQAAAVRHVLALTGCGPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADPGLHE 96
            L  A  + + A  GC PG   +A  A   Q  +  A    PA +   A +    +P   +
Sbjct: 900  LAVATPQTLQAEAGCAPGTEPVATMA---QQEVGEALGPRPAPEEKNAALPTVPEPAALD 956

Query: 97   TLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPCAALMAALAAAEPADSGLE 156
             +   DP  PA   G       PWA          ++E A     M AL+  EPA    E
Sbjct: 957  QVQQDDPQ-PAAEAGT------PWA----------AQEDADSTLGMEALSLPEPASGAGE 999

Query: 157  RLVRALCTPGYNA 169
             +  AL  PG  A
Sbjct: 1000 EIAEALSRPGREA 1012


>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 37/133 (27%), Positives = 50/133 (37%), Gaps = 20/133 (15%)

Query: 37   LQAAAVRHVLALTGCGPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADPGLHE 96
            L  A  + + A  GC PG   +A  A   Q  +  A    PA +   A +    +P   +
Sbjct: 900  LAVATPQTLQAEAGCAPGTEPVATMA---QQEVGEALGPRPAPEEKNAALPTVPEPAALD 956

Query: 97   TLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPCAALMAALAAAEPADSGLE 156
             +   DP  PA   G       PWA          ++E A     M AL+  EPA    E
Sbjct: 957  QVQQDDPQ-PAAEAGT------PWA----------AQEDADSTLGMEALSLPEPASGAGE 999

Query: 157  RLVRALCTPGYNA 169
             +  AL  PG  A
Sbjct: 1000 EIAEALSRPGREA 1012


>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1562

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 37/133 (27%), Positives = 50/133 (37%), Gaps = 20/133 (15%)

Query: 37   LQAAAVRHVLALTGCGPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADPGLHE 96
            L  A  + + A  GC PG   +A  A   Q  +  A    PA +   A +    +P   +
Sbjct: 940  LAVATPQTLQAEAGCAPGTEPVATMA---QQEVGEALGPRPAPEEKNAALPTVPEPAALD 996

Query: 97   TLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPCAALMAALAAAEPADSGLE 156
             +   DP  PA   G       PWA          ++E A     M AL+  EPA    E
Sbjct: 997  QVQQDDPQ-PAAEAGT------PWA----------AQEDADSTLGMEALSLPEPASGAGE 1039

Query: 157  RLVRALCTPGYNA 169
             +  AL  PG  A
Sbjct: 1040 EIAEALSRPGREA 1052


>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 37/133 (27%), Positives = 50/133 (37%), Gaps = 20/133 (15%)

Query: 37   LQAAAVRHVLALTGCGPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADPGLHE 96
            L  A  + + A  GC PG   +A  A   Q  +  A    PA +   A +    +P   +
Sbjct: 900  LAVATPQTLQAEAGCAPGTEPVATMA---QQEVGEALGPRPAPEEKNAALPTVPEPAALD 956

Query: 97   TLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPCAALMAALAAAEPADSGLE 156
             +   DP  PA   G       PWA          ++E A     M AL+  EPA    E
Sbjct: 957  QVQQDDPQ-PAAEAGT------PWA----------AQEDADSTLGMEALSLPEPASGAGE 999

Query: 157  RLVRALCTPGYNA 169
             +  AL  PG  A
Sbjct: 1000 EIAEALSRPGREA 1012


>gi|207452735 epiplakin 1 [Homo sapiens]
          Length = 5090

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 53/177 (29%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 26   LPFLAPGARADLQAA---AVRHVLALTGCGPGRALL--AGQAALLQALME-LAPASAPAR 79
            L  LA G ++  Q A   AV+  L  TGC  G  L     +A++ QA+ + L P     R
Sbjct: 1219 LEALAQGTQSPAQVAEQPAVKACLWGTGCVAGVLLQPSGAKASIAQAVRDGLLPTGLGQR 1278

Query: 80   DA-ARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPC 138
               A+       DP L+   L+ +  +   L+GR L  Q   AE AAA   +     A  
Sbjct: 1279 LLEAQVASGFLVDP-LNNQRLSVEDAVKVGLVGRELSEQLGQAERAAAGYPD-PYSRASL 1336

Query: 139  AALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLLSNLSQRPAARAFLLD 195
            +   A      P + GL  L   L T G     P+H +     +L Q  A R  LLD
Sbjct: 1337 SLWQAMEKGLVPQNEGLPLLQVQLATGG--VVDPVHGV-----HLPQAAACRLGLLD 1386


>gi|130980075 centromere protein J [Homo sapiens]
          Length = 1338

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 16/120 (13%)

Query: 253 AGPEDFSEEEMQRLPVDLQYLPPDKQREPDADIRKMLVEAIMLLTATAPGRQQVRDQGAY 312
           A P  FSE + Q  PV+   L  + +  P         E+I+         Q+  D    
Sbjct: 259 ASPNLFSEAQYQEAPVEKNNLKEENRNHPTG-------ESILCWEKVTEQIQEAND---- 307

Query: 313 LILRELHSWEPEPDVRTACEKLIQVLIGDEPERGMENLLEVQVPEDVEQQLQQLDCREQE 372
              + L   +   +V    E+ I+  IG E ++  E+ LE Q+  + EQ+L+Q   +E E
Sbjct: 308 ---KNLQKHDDSSEVANIEERPIKAAIG-ERKQTFEDYLEEQIQLE-EQELKQKQLKEAE 362


>gi|5454158 valyl-tRNA synthetase [Homo sapiens]
          Length = 1264

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 50/159 (31%), Positives = 60/159 (37%), Gaps = 29/159 (18%)

Query: 2   GEAGAGAGASGG--------PEASPEAEVVKLLPFL--APGARADLQAAAVRHVL---AL 48
           GEAG G G  G         P  S        LP L   PG      A AV  +L    L
Sbjct: 25  GEAGEGPGWGGAHPRICLQPPPTSRTPFPPPRLPALEQGPGGLWVWGATAVAQLLWPAGL 84

Query: 49  TGCGPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPAR 108
            G G  RA +  Q  +  A  EL PA+  A   A  L + A DP   + +L A       
Sbjct: 85  GGPGGSRAAVLVQQWVSYADTELIPAACGATLPALGLRSSAQDP---QAVLGA------- 134

Query: 109 LMGRALDPQWPWAEEAAAALANLSREPAPCAALMAALAA 147
            +GRAL P   W       L       AP  A +AA+ A
Sbjct: 135 -LGRALSPLEEWLR-----LHTYLAGEAPTLADLAAVTA 167


>gi|157266298 anti-Mullerian hormone [Homo sapiens]
          Length = 560

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 9/80 (11%)

Query: 135 PAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAP--------LLSNLSQR 186
           P P A L  +  +A+P    L RLVRAL  P   A AP   L P         L NLS  
Sbjct: 274 PRPSAELEESPPSADPFLETLTRLVRALRVPPARASAPRLALDPDALAGFPQGLVNLSD- 332

Query: 187 PAARAFLLDPDRCVVQRLLP 206
           PAA   LLD +  ++  L P
Sbjct: 333 PAALERLLDGEEPLLLLLRP 352


>gi|39777606 Rho guanine nucleotide exchange factor 1 isoform 1
           [Homo sapiens]
          Length = 927

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 3   EAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLAL----------TGCG 52
           E G G   +   +A  E  +  LLPF  PG    L A A+R VL+L           G G
Sbjct: 804 ENGNGGRETSPADARTERILSDLLPFCRPGPEGQLAATALRKVLSLKQLLFPAEEDNGAG 863

Query: 53  PGR 55
           P R
Sbjct: 864 PPR 866


>gi|39777604 Rho guanine nucleotide exchange factor 1 isoform 3
           [Homo sapiens]
          Length = 879

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 3   EAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLAL----------TGCG 52
           E G G   +   +A  E  +  LLPF  PG    L A A+R VL+L           G G
Sbjct: 756 ENGNGGRETSPADARTERILSDLLPFCRPGPEGQLAATALRKVLSLKQLLFPAEEDNGAG 815

Query: 53  PGR 55
           P R
Sbjct: 816 PPR 818


>gi|15011972 Rho guanine nucleotide exchange factor 1 isoform 2
           [Homo sapiens]
          Length = 912

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 3   EAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLAL----------TGCG 52
           E G G   +   +A  E  +  LLPF  PG    L A A+R VL+L           G G
Sbjct: 789 ENGNGGRETSPADARTERILSDLLPFCRPGPEGQLAATALRKVLSLKQLLFPAEEDNGAG 848

Query: 53  PGR 55
           P R
Sbjct: 849 PPR 851


>gi|37693995 Kruppel-like factor 13 [Homo sapiens]
          Length = 288

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 38/133 (28%), Positives = 44/133 (33%), Gaps = 17/133 (12%)

Query: 9   GASGGPEASPEAEVVKLLPFLAP-GARADLQAAAVRHVLALTGCGPGRALLAGQAALLQA 67
           G   GPE+ PE   V   P L     R D               G   A L   A +L  
Sbjct: 26  GPREGPESRPEGAAVAATPTLPRVEERRD---------------GKDSASLFVVARILAD 70

Query: 68  LMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPWAEEAAAA 127
           L + APA APA     A    A  P       A +P  P      A  P   W+E    A
Sbjct: 71  LNQQAPAPAPAERREGAAARKARTP-CRLPPPAPEPTSPGAEGAAAAPPSPAWSEPEPEA 129

Query: 128 LANLSREPAPCAA 140
                REP P  +
Sbjct: 130 GLEPEREPGPAGS 142


>gi|149999371 hypothetical protein LOC91056 [Homo sapiens]
          Length = 821

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 44/160 (27%), Positives = 60/160 (37%), Gaps = 34/160 (21%)

Query: 8   AGASGGPEASPEAEVVKLLPFLAPGA-----------RADLQAAAVRHVLALTGCGPGRA 56
           AG + GP +     ++ LL  LA G+           +  LQA A   +  L  C PG  
Sbjct: 49  AGGALGPTSGASCRLLPLLLGLAAGSDLGRGFVPASEQRPLQATACECLRELESCKPG-- 106

Query: 57  LLAGQAALLQALM----ELAPASAPARDAARALVNLAADPGLHETLLAADPGLPA----- 107
           LL G   LL+ L+     + P S     A R  + L +  G     L  D   P      
Sbjct: 107 LLGGSLGLLRGLLGQEGPVQPLSLLLALALRNTLVLQSRVGAGLGGLLTDKVSPTGGGPW 166

Query: 108 ----------RLMGRALDPQWPWAEEAAAALANLSREPAP 137
                     RL  +A  P WP AEE     +  +RE +P
Sbjct: 167 DWTLVEEGDGRLQPQA--PSWPAAEEGEGERSLTAREHSP 204


>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
            [Homo sapiens]
          Length = 2649

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 5    GAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPG-RALLAGQAA 63
            G  AGA+G  EA+PE            G  A+ QAA    V A+    PG  AL      
Sbjct: 965  GTQAGAAGNWEAAPE----------PVGDLAEEQAAV---VTAMVKAEPGDEALSPASRD 1011

Query: 64   LLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPWAEE 123
            +     +   A+APA DA +  V     PG      AA  G+ +     A    WPW  E
Sbjct: 1012 ITATTAQTEAAAAPAGDAVKEDV----VPGACAAGAAAAAGVESTEAEDAEADFWPWDGE 1067

Query: 124  AAA 126
              A
Sbjct: 1068 LNA 1070


>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
           [Homo sapiens]
          Length = 2080

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 5   GAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPG-RALLAGQAA 63
           G  AGA+G  EA+PE            G  A+ QAA    V A+    PG  AL      
Sbjct: 396 GTQAGAAGNWEAAPE----------PVGDLAEEQAAV---VTAMVKAEPGDEALSPASRD 442

Query: 64  LLQALMELAPASAPARDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPWAEE 123
           +     +   A+APA DA +  V     PG      AA  G+ +     A    WPW  E
Sbjct: 443 ITATTAQTEAAAAPAGDAVKEDV----VPGACAAGAAAAAGVESTEAEDAEADFWPWDGE 498

Query: 124 AAA 126
             A
Sbjct: 499 LNA 501


>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
          Length = 483

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 2   GEAGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRA 56
           G  G+G G SGGP A           F  PG +    +  V  V+A  G GP R+
Sbjct: 68  GPGGSGGGGSGGPGAGTS--------FPPPGVKLGRDSGKVTTVVATLGQGPERS 114


>gi|208609985 SH2 domain containing 3A [Homo sapiens]
          Length = 576

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 46/146 (31%), Positives = 58/146 (39%), Gaps = 33/146 (22%)

Query: 38  QAAAVRHVLALTGC-GPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADPGL-- 94
           Q  A+   LA+ GC GP    L  +AA L+ L+ELA A  P   AA  L  LAA  G   
Sbjct: 368 QTLALAGALAVLGCSGP----LEERAAALRGLVELALALRPG--AAGDLPGLAAVMGALL 421

Query: 95  ------------------HETLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPA 136
                              E  LA +  L   +  RALD      +    AL ++    A
Sbjct: 422 MPQVSRLEHTWRQLRRSHTEAALAFEQELKPLM--RALDEGAGPCDPGEVALPHV----A 475

Query: 137 PCAALMAALAAAEPADSGLERLVRAL 162
           P   L+     A P D   ERL+R L
Sbjct: 476 PMVRLLEGEEVAGPLDESCERLLRTL 501


>gi|10140847 homeobox A2 [Homo sapiens]
          Length = 376

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 111 GRALDPQWPWAEEAAAALANLSREPAPCAALMAALAAAEPAD-SGLERLVRALCTPGYNA 169
           G    P++PW +E  AA         P AA  A  AA  PA  S  E L  A  + G + 
Sbjct: 88  GALQPPEYPWMKEKKAAKKTAL---LPAAAAAATAAATGPACLSHKESLEIADGSGGGSR 144

Query: 170 RAPLHYLAPLLSNLSQRPAARAFLLDPDRCVVQRLLPLTQ 209
           R    Y    L  L +      +L  P R  +  LL LT+
Sbjct: 145 RLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTE 184


>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 264

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 48/157 (30%), Positives = 56/157 (35%), Gaps = 20/157 (12%)

Query: 4   AGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAGQAA 63
           A  G G   G    P       L   A  A     AA+ R V A  G    R LL   A 
Sbjct: 53  AAGGRGRETGNAQGPR------LALQARAAAPAFPAASRRSVPAPRG----RRLLLPGAV 102

Query: 64  LLQALMELAPASAPA---RDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPW 120
              A+ +  P S P    R AARA     A  GL        P    R  G ++D   P 
Sbjct: 103 AACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAP- 161

Query: 121 AEEAAAALANL------SREPAPCAALMAALAAAEPA 151
             EAA+A A L      +R P P    M A   A+ A
Sbjct: 162 PSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAA 198


>gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens]
          Length = 317

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 48/157 (30%), Positives = 56/157 (35%), Gaps = 20/157 (12%)

Query: 4   AGAGAGASGGPEASPEAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAGQAA 63
           A  G G   G    P       L   A  A     AA+ R V A  G    R LL   A 
Sbjct: 47  AAGGRGRETGNAQGPR------LALQARAAAPAFPAASRRSVPAPRG----RRLLLPGAV 96

Query: 64  LLQALMELAPASAPA---RDAARALVNLAADPGLHETLLAADPGLPARLMGRALDPQWPW 120
              A+ +  P S P    R AARA     A  GL        P    R  G ++D   P 
Sbjct: 97  AACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAP- 155

Query: 121 AEEAAAALANL------SREPAPCAALMAALAAAEPA 151
             EAA+A A L      +R P P    M A   A+ A
Sbjct: 156 PSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAA 192


>gi|239751641 PREDICTED: hypothetical protein XP_002347943 [Homo
           sapiens]
          Length = 369

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 23/111 (20%)

Query: 34  RADLQAAAVRH-VLALTGCGPGRALLAGQAALLQALMELAPASAPARDAARALVNLAADP 92
           + +L+A  +R  +L LTG GP       +A  LQAL+  AP +   R  A AL +L+   
Sbjct: 119 KGELKALKLRFGLLPLTG-GP-------RALPLQALLLEAPWTGDPRPGAEALSSLS--- 167

Query: 93  GLHETLL---AADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPCAA 140
           G H  LL   + D G+P    G  L P+W         LA   R P   A+
Sbjct: 168 GSHSCLLRPRSLDAGIPG-CRGCLLAPRW-------TGLATSPRSPQESAS 210


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,085,942
Number of Sequences: 37866
Number of extensions: 842124
Number of successful extensions: 3553
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 3451
Number of HSP's gapped (non-prelim): 132
length of query: 390
length of database: 18,247,518
effective HSP length: 104
effective length of query: 286
effective length of database: 14,309,454
effective search space: 4092503844
effective search space used: 4092503844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press