Guide to the Human Genome
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Name: ATP6V0A1 Sequence: fasta or formatted (838aa) NCBI GI: 194097401
Description:

ATPase, H+ transporting, lysosomal V0 subunit a1 isoform a

Referenced in:

Lysosomes and Related Organelles

Other entries for this name:
alt prot [837aa] ATPase, H+ transporting, lysosomal V0 subunit a1 isoform b
alt prot [831aa] ATPase, H+ transporting, lysosomal V0 subunit a1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         41           3
 C cysteine            1.7         14           2
 D aspartate           3.5         29           2
 E glutamate           7.3         61           2
 F phenylalanine       8.1         68           4
 G glycine             6.1         51           2
 H histidine           2.5         21           2
 I isoleucine          7.0         59           2
 K lysine              4.4         37           2
 L leucine            11.1         93           2
 M methionine          3.5         29           1
 N asparagine          5.1         43           1
 P proline             4.3         36           2
 Q glutamine           3.8         32           2
 R arginine            5.3         44           2
 S serine              5.5         46           3
 T threonine           5.5         46           1
 V valine              6.0         50           3
 W tryptophan          1.4         12           1
 Y tyrosine            3.1         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase, H+ transporting, lysosomal V0 subunit a1 is... 
ATP6V0A1              0.987   ATPase, H+ transporting, lysosomal V0 subunit a1 iso...
ATP6V0A1              0.983   ATPase, H+ transporting, lysosomal V0 subunit a1 is...
ATP6V0A4              0.612   ATPase, H+ transporting, lysosomal V0 subunit a4 [Ho...
ATP6V0A4              0.612   ATPase, H+ transporting, lysosomal V0 subunit a4 [Ho...
ATP6V0A4              0.612   ATPase, H+ transporting, lysosomal V0 subunit a4 [Ho...
ATP6V0A2              0.512   ATPase, H+ transporting, lysosomal V0 subunit A2 [Ho...
TCIRG1                0.431   T-cell, immune regulator 1 isoform a 
TCIRG1                0.336   T-cell, immune regulator 1 isoform b 
CAGE1                 0.006   cancer antigen 1 
LOC390561             0.005   PREDICTED: similar to hect domain and RLD 2 
MYH7                  0.005   myosin, heavy chain 7, cardiac muscle, beta 
C14orf45              0.005   hypothetical protein LOC80127 
SMC1B                 0.005   SMC1 structural maintenance of chromosomes 1-like 2 ...
CCDC18                0.005   sarcoma antigen NY-SAR-41 
CEP110                0.005   centrosomal protein 110kDa 
LOC653061             0.004   PREDICTED: similar to Golgin subfamily A member 8-l...
HMMR                  0.004   hyaluronan-mediated motility receptor isoform b [Ho...
LOC653061             0.004   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.004   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.004   PREDICTED: similar to Golgin subfamily A member 8-l...
BRAP                  0.004   BRCA1 associated protein 
MYH6                  0.004   myosin heavy chain 6 
SYNJ2                 0.004   synaptojanin 2 
TPR                   0.004   nuclear pore complex-associated protein TPR 
CENPE                 0.004   centromere protein E 
C6orf97               0.004   hypothetical protein LOC80129 
MYH14                 0.004   myosin, heavy chain 14 isoform 1 
MYH14                 0.004   myosin, heavy chain 14 isoform 2 
MYH14                 0.004   myosin, heavy chain 14 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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