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Search of human proteins with 193804856
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo
sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens] 375 e-104
gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens] 340 5e-94
gi|27734895 hypothetical protein LOC205428 isoform a [Homo sapiens] 47 7e-06
gi|24497533 homeobox C10 [Homo sapiens] 29 2.0
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 29 2.6
gi|4506727 ribosomal protein S4, Y-linked 1 Y isoform [Homo sapi... 28 3.3
gi|4506725 ribosomal protein S4, X-linked X isoform [Homo sapiens] 28 4.4
gi|47578107 delangin isoform B [Homo sapiens] 28 4.4
gi|47578105 delangin isoform A [Homo sapiens] 28 4.4
gi|13259529 survival of motor neuron 2, centromeric isoform b [H... 28 5.7
gi|13259531 survival of motor neuron 2, centromeric isoform c [H... 28 5.7
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 28 5.7
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 28 5.7
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 28 5.7
gi|13259512 survival of motor neuron 1, telomeric isoform b [Hom... 28 5.7
gi|56699475 zinc finger protein 202 [Homo sapiens] 28 5.7
gi|163310725 ER degradation enhancer, mannosidase alpha-like 3 [... 28 5.7
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 27 7.4
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 27 7.4
gi|88703062 ribosomal protein S4, Y-linked 2 [Homo sapiens] 27 7.4
gi|22748787 hypothetical protein LOC126695 [Homo sapiens] 27 7.4
gi|40254921 transmembrane protein 144 [Homo sapiens] 27 9.7
>gi|193804856 hypothetical protein LOC79742 isoform 2 [Homo sapiens]
Length = 182
Score = 375 bits (962), Expect = e-104
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC 60
MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC
Sbjct: 1 MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC 60
Query: 61 NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY 120
NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY
Sbjct: 61 NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY 120
Query: 121 QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQDCHQGQRELKFLCM 180
QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQDCHQGQRELKFLCM
Sbjct: 121 QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQDCHQGQRELKFLCM 180
Query: 181 LR 182
LR
Sbjct: 181 LR 182
>gi|193804854 hypothetical protein LOC79742 isoform 1 [Homo sapiens]
Length = 433
Score = 340 bits (871), Expect = 5e-94
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC 60
MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC
Sbjct: 1 MEPQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKC 60
Query: 61 NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY 120
NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY
Sbjct: 61 NACIGTSICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKY 120
Query: 121 QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQ 166
QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQ
Sbjct: 121 QNEISDRRICASASAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQ 166
>gi|27734895 hypothetical protein LOC205428 isoform a [Homo sapiens]
Length = 430
Score = 47.4 bits (111), Expect = 7e-06
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 15 GWLALLLWVSALSCSFSLPASSLSSLVPQVRTSYNFGRTFLGLDKCNACIGTSICKKFFK 74
G L+ L ++AL L SL+ + + R FL L+KC AC GTS C++F
Sbjct: 10 GRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELTDRRFLQLNKCPACFGTSWCRRFLN 69
Query: 75 EEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIW-RPVEIFRLVSKYQNEISDRRICASA 133
++ + W L + Y A Y + + R V + RL S+ + D+ IC A
Sbjct: 70 GQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQLDQSICKRA 129
Query: 134 SAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQ 166
+ C + + + +TE + + LTP+ V+
Sbjct: 130 TGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVE 162
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 29.3 bits (64), Expect = 2.0
Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 9/138 (6%)
Query: 29 SFSLPASSLSSLVPQVRTSYNFGRTFLGLDKCNACIGTSICKKFFKEEIRSDNWLASHLG 88
S LP S L V + Y ++ LDK C G + + F E+ S N A HL
Sbjct: 130 SHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAPF-EQRASLNPRAEHLE 188
Query: 89 LPP-DSLLSYPANYSDDSKIWRPVEIFRLVS-----KYQNEISDRRICASASAPKTCSIE 142
P +S+P DS+ P EI S +E R A+ S+P T E
Sbjct: 189 SPQLGGKVSFPETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNE 248
Query: 143 --RVLRKTERFQKWLQAK 158
++ WL AK
Sbjct: 249 AKEEIKAENTTGNWLTAK 266
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding
domain 1 [Homo sapiens]
Length = 1412
Score = 28.9 bits (63), Expect = 2.6
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 43 QVRTSYNFGRTFLGLDKCNACIGTSICKKFFKEEIRSDNWLASHLGLPP 91
Q T+ N + LD C AC+ S C K+E+ L HL + P
Sbjct: 552 QEETTENIEKLRTSLDSCQACMKISCCSHDLKKEVD----LLQHLQVSP 596
>gi|4506727 ribosomal protein S4, Y-linked 1 Y isoform [Homo
sapiens]
Length = 263
Score = 28.5 bits (62), Expect = 3.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 95 LSYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
++YPA + D I + E FRLV + + RI + K C + ++
Sbjct: 80 VTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKI 129
>gi|4506725 ribosomal protein S4, X-linked X isoform [Homo sapiens]
Length = 263
Score = 28.1 bits (61), Expect = 4.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 95 LSYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERVLRKTE 149
++YPA + D I + E FRL+ + + RI + K C + ++ T+
Sbjct: 80 ITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTK 134
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 28.1 bits (61), Expect = 4.4
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 93 SLLSYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERVLRKTERFQ 152
+LL++ + ++ ++WR + + R+ ++ I S + PK IE V+ + ++
Sbjct: 1281 TLLNHNNDTEEEERLWRDLIMERVTKSADACLTTINIMTSPNMPKAVYIEDVIERVIQYT 1340
Query: 153 KWLQAKRLTP 162
K+ L P
Sbjct: 1341 KFHLQNTLYP 1350
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 28.1 bits (61), Expect = 4.4
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 93 SLLSYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERVLRKTERFQ 152
+LL++ + ++ ++WR + + R+ ++ I S + PK IE V+ + ++
Sbjct: 1281 TLLNHNNDTEEEERLWRDLIMERVTKSADACLTTINIMTSPNMPKAVYIEDVIERVIQYT 1340
Query: 153 KWLQAKRLTP 162
K+ L P
Sbjct: 1341 KFHLQNTLYP 1350
>gi|13259529 survival of motor neuron 2, centromeric isoform b [Homo
sapiens]
Length = 262
Score = 27.7 bits (60), Expect = 5.7
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 102 SDDSKIWRPVEIFRL----VSKYQNEISDRRICASASAPKTCSIERVLRKTERFQK 153
SDDS IW + + V+ +++ + + IC ++ PKT + +K + +K
Sbjct: 28 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKK 83
>gi|13259531 survival of motor neuron 2, centromeric isoform c [Homo
sapiens]
Length = 250
Score = 27.7 bits (60), Expect = 5.7
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 102 SDDSKIWRPVEIFRL----VSKYQNEISDRRICASASAPKTCSIERVLRKTERFQK 153
SDDS IW + + V+ +++ + + IC ++ PKT + +K + +K
Sbjct: 28 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKK 83
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 27.7 bits (60), Expect = 5.7
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 102 SDDSKIWRPVEIFRL----VSKYQNEISDRRICASASAPKTCSIERVLRKTERFQK 153
SDDS IW + + V+ +++ + + IC ++ PKT + +K + +K
Sbjct: 28 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKK 83
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 27.7 bits (60), Expect = 5.7
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 102 SDDSKIWRPVEIFRL----VSKYQNEISDRRICASASAPKTCSIERVLRKTERFQK 153
SDDS IW + + V+ +++ + + IC ++ PKT + +K + +K
Sbjct: 28 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKK 83
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 27.7 bits (60), Expect = 5.7
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 102 SDDSKIWRPVEIFRL----VSKYQNEISDRRICASASAPKTCSIERVLRKTERFQK 153
SDDS IW + + V+ +++ + + IC ++ PKT + +K + +K
Sbjct: 28 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKK 83
>gi|13259512 survival of motor neuron 1, telomeric isoform b [Homo
sapiens]
Length = 262
Score = 27.7 bits (60), Expect = 5.7
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 102 SDDSKIWRPVEIFRL----VSKYQNEISDRRICASASAPKTCSIERVLRKTERFQK 153
SDDS IW + + V+ +++ + + IC ++ PKT + +K + +K
Sbjct: 28 SDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKK 83
>gi|56699475 zinc finger protein 202 [Homo sapiens]
Length = 648
Score = 27.7 bits (60), Expect = 5.7
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 67 SICKKFFKEEIRSDNWLASHLGLPPDSLLSYPANYSDDSKIWRPVEIFRLVSKYQNEISD 126
S+C K F L +H G P + +Y+ S + R ++ ++ + Y+ ++
Sbjct: 400 SVCGKSFTCNSHLVRHLRTHTGEKPYKCMECGKSYTRSSHLARHQKVHKMNAPYKYPLNR 459
Query: 127 RRICASA---SAPKTCSIERVLRKTERFQKWLQAKRLTPDLVQDCHQGQRELKFLCML 181
+ + ++ A +T S+E+ R + + + R T DLV+ E F C +
Sbjct: 460 KNLEETSPVTQAERTPSVEKPYRCDDCGKHF----RWTSDLVRHQRTHTGEKPFFCTI 513
>gi|163310725 ER degradation enhancer, mannosidase alpha-like 3
[Homo sapiens]
Length = 932
Score = 27.7 bits (60), Expect = 5.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 32 LPASSLSSLVPQVRTSYNFG------RTFLGLDKCNACIGTSI 68
LPA + +S +P R + FG RT D C AC GT I
Sbjct: 191 LPAFNTTSGLPYPRINLKFGIRKPEARTGTETDTCTACAGTLI 233
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 27.3 bits (59), Expect = 7.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 89 LPPDSLLSYPANYSDDSKIWRPV 111
LPP SLL P N++ D+K+ P+
Sbjct: 529 LPPTSLLKSPLNHTQDAKLPSPL 551
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 27.3 bits (59), Expect = 7.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 89 LPPDSLLSYPANYSDDSKIWRPV 111
LPP SLL P N++ D+K+ P+
Sbjct: 529 LPPTSLLKSPLNHTQDAKLPSPL 551
>gi|88703062 ribosomal protein S4, Y-linked 2 [Homo sapiens]
Length = 263
Score = 27.3 bits (59), Expect = 7.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 95 LSYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
++YPA + D I + E FRLV + + RI + K C + ++
Sbjct: 80 ITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKI 129
>gi|22748787 hypothetical protein LOC126695 [Homo sapiens]
Length = 398
Score = 27.3 bits (59), Expect = 7.4
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 45 RTSYNFGRTFLGLDKCNACI-GTSIC--KKFFKEEIRSDNWLASHLGLPP 91
R ++ F R L +C AC+ G S C + E NW H G+PP
Sbjct: 87 RAAFCFRRCRDCLQRCGACVRGCSPCLSTEDSTEGTAEANWAKEHNGVPP 136
>gi|40254921 transmembrane protein 144 [Homo sapiens]
Length = 345
Score = 26.9 bits (58), Expect = 9.7
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 3 PQLGPEAAALRPGWLALLLWVSALSCSFSLPASSLSSLV 41
P+L PEA PG+L+ +LW A C F + SLS++V
Sbjct: 258 PKLYPEAVL--PGFLSGVLWAIATCCWF-IANHSLSAVV 293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,504,030
Number of Sequences: 37866
Number of extensions: 311348
Number of successful extensions: 706
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 24
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.