Guide to the Human Genome
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Name: RPS4X Sequence: fasta or formatted (263aa) NCBI GI: 4506725
Description:

ribosomal protein S4, X-linked X isoform

Referenced in:

Gene Families
Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         15           2
 C cysteine            1.5          4           1
 D aspartate           6.1         16           1
 E glutamate           3.4          9           2
 F phenylalanine       4.6         12           1
 G glycine             8.7         23           2
 H histidine           3.0          8           1
 I isoleucine          9.5         25           2
 K lysine             10.3         27           2
 L leucine             7.6         20           1
 M methionine          1.9          5           1
 N asparagine          3.8         10           1
 P proline             5.3         14           1
 Q glutamine           1.1          3           1
 R arginine            8.4         22           1
 S serine              3.0          8           2
 T threonine           7.2         19           1
 V valine              6.1         16           2
 W tryptophan          0.8          2           1
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein S4, X-linked X isoform 
RPS4Y1                0.941   ribosomal protein S4, Y-linked 1 Y isoform 
RPS4Y2                0.924   ribosomal protein S4, Y-linked 2 
MLL4                  0.010   myeloid/lymphoid or mixed-lineage leukemia 4 
DNAH9                 0.010   dynein, axonemal, heavy chain 9 isoform 2 
KNDC1                 0.010   kinase non-catalytic C-lobe domain (KIND) containin...
PICALM                0.008   phosphatidylinositol-binding clathrin assembly prote...
PICALM                0.008   phosphatidylinositol-binding clathrin assembly prote...
DNAH11                0.008   dynein, axonemal, heavy chain 11 
ARHGEF10L             0.006   Rho guanine nucleotide exchange factor (GEF) 10-like...
MTHFD2                0.006   methylenetetrahydrofolate dehydrogenase 2 precursor ...
ARHGEF10L             0.006   Rho guanine nucleotide exchange factor (GEF) 10-like...
CXorf36               0.006   hypothetical protein LOC79742 isoform 2 
CXorf36               0.006   hypothetical protein LOC79742 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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