Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 193788726

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|193788726 CSAG family, member 3 isoform b [Homo sapiens]
         (110 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157738682 CSAG family, member 2 isoform 2 [Homo sapiens]           237   2e-63
gi|193788726 CSAG family, member 3 isoform b [Homo sapiens]           237   2e-63
gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo s...   229   3e-61
gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo s...   229   3e-61
gi|239757940 PREDICTED: similar to CSAG family, member 2 [Homo s...   227   1e-60
gi|157502216 CSAG family, member 2 isoform 1 [Homo sapiens]           226   3e-60
gi|193788718 CSAG family, member 3 isoform a [Homo sapiens]           226   3e-60
gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens]           140   2e-34
gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens]          140   2e-34
gi|208022661 hypothetical protein LOC57701 [Homo sapiens]              29   0.93 
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     28   1.2  
gi|62739186 complement factor H isoform a precursor [Homo sapiens]     28   1.6  
gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]    28   1.6  
gi|150170670 piccolo isoform 2 [Homo sapiens]                          28   1.6  
gi|150378539 piccolo isoform 1 [Homo sapiens]                          28   1.6  
gi|57863314 vacuolar protein sorting 37C [Homo sapiens]                28   1.6  
gi|7657693 zinc finger protein 324 [Homo sapiens]                      28   1.6  
gi|40068059 CBF1 interacting corepressor [Homo sapiens]                28   2.1  
gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo ...    28   2.1  
gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo ...    28   2.1  
gi|170784838 secreted frizzled-related  protein 4 [Homo sapiens]       28   2.1  
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ...    28   2.1  
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ...    28   2.1  
gi|194018495 zinc finger protein 324B [Homo sapiens]                   28   2.1  
gi|34915994 transducin-like enhancer protein 4 [Homo sapiens]          28   2.1  
gi|169217599 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|239757444 PREDICTED: similar to hCG2019076 [Homo sapiens]           27   2.7  
gi|239754026 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|169216125 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|239751963 PREDICTED: similar to hCG2019076 [Homo sapiens]           27   2.7  

>gi|157738682 CSAG family, member 2 isoform 2 [Homo sapiens]
          Length = 110

 Score =  237 bits (604), Expect = 2e-63
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
           MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60

Query: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
           RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP
Sbjct: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110


>gi|193788726 CSAG family, member 3 isoform b [Homo sapiens]
          Length = 110

 Score =  237 bits (604), Expect = 2e-63
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
           MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60

Query: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
           RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP
Sbjct: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110


>gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo
           sapiens]
          Length = 110

 Score =  229 bits (585), Expect = 3e-61
 Identities = 105/110 (95%), Positives = 108/110 (98%)

Query: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
           MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1   MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60

Query: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
           RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPGRE+GP+KEVPGTKGSP
Sbjct: 61  RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGREQGPVKEVPGTKGSP 110


>gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo
           sapiens]
          Length = 110

 Score =  229 bits (585), Expect = 3e-61
 Identities = 105/110 (95%), Positives = 108/110 (98%)

Query: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
           MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1   MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60

Query: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
           RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPGRE+GP+KEVPGTKGSP
Sbjct: 61  RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGREQGPVKEVPGTKGSP 110


>gi|239757940 PREDICTED: similar to CSAG family, member 2 [Homo
           sapiens]
          Length = 110

 Score =  227 bits (579), Expect = 1e-60
 Identities = 104/110 (94%), Positives = 107/110 (97%)

Query: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
           MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1   MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60

Query: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
           RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPG E+GP+KEVPGTKGSP
Sbjct: 61  RDTGLVKMSRKPRASSPLSNNHPPTPKRLPRQPGXEQGPVKEVPGTKGSP 110


>gi|157502216 CSAG family, member 2 isoform 1 [Homo sapiens]
          Length = 127

 Score =  226 bits (576), Expect = 3e-60
 Identities = 110/127 (86%), Positives = 110/127 (86%), Gaps = 17/127 (13%)

Query: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
           MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60

Query: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKR-----------------FPRQPGREKGPIKEV 103
           RDAGLVKMSRKPRASSPLSNNHPPTPKR                 FPRQPGREKGPIKEV
Sbjct: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120

Query: 104 PGTKGSP 110
           PGTKGSP
Sbjct: 121 PGTKGSP 127


>gi|193788718 CSAG family, member 3 isoform a [Homo sapiens]
          Length = 127

 Score =  226 bits (576), Expect = 3e-60
 Identities = 110/127 (86%), Positives = 110/127 (86%), Gaps = 17/127 (13%)

Query: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
           MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1   MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60

Query: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKR-----------------FPRQPGREKGPIKEV 103
           RDAGLVKMSRKPRASSPLSNNHPPTPKR                 FPRQPGREKGPIKEV
Sbjct: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120

Query: 104 PGTKGSP 110
           PGTKGSP
Sbjct: 121 PGTKGSP 127


>gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens]
          Length = 78

 Score =  140 bits (353), Expect = 2e-34
 Identities = 65/73 (89%), Positives = 66/73 (90%)

Query: 38  ACWPAFTVLGEAWRDQVDWSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREK 97
           ACWPAFTVLGEA  DQVDWSRL RD GLVKMSRKPRASSP SNNHP TPKRFPRQP REK
Sbjct: 6   ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREK 65

Query: 98  GPIKEVPGTKGSP 110
           GP+KEVPGTKGSP
Sbjct: 66  GPVKEVPGTKGSP 78


>gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens]
          Length = 78

 Score =  140 bits (353), Expect = 2e-34
 Identities = 65/73 (89%), Positives = 66/73 (90%)

Query: 38  ACWPAFTVLGEAWRDQVDWSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREK 97
           ACWPAFTVLGEA  DQVDWSRL RD GLVKMSRKPRASSP SNNHP TPKRFPRQP REK
Sbjct: 6   ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKRFPRQPKREK 65

Query: 98  GPIKEVPGTKGSP 110
           GP+KEVPGTKGSP
Sbjct: 66  GPVKEVPGTKGSP 78


>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
          Length = 1334

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 44  TVLGEAWRDQVDWSRLLRDAGLVKMSRKPRASSPLSNNHP-----PTPKRFPRQPGREKG 98
           T+LG   R Q++  +LL D      +    A+ PL+ +HP      +P + P Q  + KG
Sbjct: 316 TLLGALARRQLNLGQLLEDTESYLQAFLAGAAGPLNGDHPGPGQSSSPDQAPPQLSKSKG 375

Query: 99  PIKEVPG 105
             K   G
Sbjct: 376 LPKSAWG 382


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 84  PTPKRFPRQPGREKGPIKEVPGTKGSP 110
           P PK FP  PG+   P   VPG  G+P
Sbjct: 358 PGPKGFPGLPGQPGPPGLPVPGQAGAP 384


>gi|62739186 complement factor H isoform a precursor [Homo sapiens]
          Length = 1231

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 5   LIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWS 57
           LI L E +K K      KEF H +NI+ RC     W     +   W  +V+ S
Sbjct: 758 LIILEEHLKNK------KEFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCS 804


>gi|5729929 matrix metalloproteinase 24 preproprotein [Homo sapiens]
          Length = 645

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 71  KPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGS 109
           +P  + P+   H P+ ++  RQP   + P+ + P T G+
Sbjct: 337 RPLPTLPVRRIHSPSERKHERQPRPPRPPLGDRPSTPGT 375


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 71  KPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
           KP A  P      P P + P QP     P+ + PGT   P
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPP 352



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 69  SRKPRASSPLSNNHPPTP----KRFPRQPGREKGPIKEVPGTKGS 109
           S KP +  P S   PP      K  P+QPG  K P ++    K S
Sbjct: 496 SAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPS 540


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 71  KPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
           KP A  P      P P + P QP     P+ + PGT   P
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPP 352



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 69  SRKPRASSPLSNNHPPTP----KRFPRQPGREKGPIKEVPGTKGS 109
           S KP +  P S   PP      K  P+QPG  K P ++    K S
Sbjct: 496 SAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPS 540


>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
          Length = 355

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 11/53 (20%)

Query: 58  RLLRDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKGSP 110
           R +R   L ++ RKPRAS  L+ + PP     PR P     P++ VP  +G+P
Sbjct: 146 RRVRVEKLQEVVRKPRASQELAGDAPP-----PRPP----PPVRPVP--QGTP 187


>gi|7657693 zinc finger protein 324 [Homo sapiens]
          Length = 553

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 17/64 (26%)

Query: 56  WSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRF--------------PRQPGREKGPIK 101
           W RLL  +G  + S   R +SPL    PP   R               PR P R+K   +
Sbjct: 144 WERLLLGSGSGQASVSLRLTSPL---RPPEGVRLREKTLTEHALLGRQPRTPERQKPCAQ 200

Query: 102 EVPG 105
           EVPG
Sbjct: 201 EVPG 204


>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
          Length = 450

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 61  RDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREK 97
           R  G  + SR+ R+ SP S     T KR  R PG E+
Sbjct: 379 RSHGREERSRRSRSRSPGSYKQRETRKRAQRNPGEEQ 415


>gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo
           sapiens]
          Length = 824

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 71  KPRASSPLSNNHPP----TPKRFPRQPGREKGPIKEVPGTKGSP 110
           +P  SS L +  PP    TP   PR+PGR+      +    GSP
Sbjct: 395 EPGKSSILQHERPPPLPTTPTPVPREPGRKPLSSSRLGEVTGSP 438


>gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo
           sapiens]
          Length = 731

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 71  KPRASSPLSNNHPP----TPKRFPRQPGREKGPIKEVPGTKGSP 110
           +P  SS L +  PP    TP   PR+PGR+      +    GSP
Sbjct: 302 EPGKSSILQHERPPPLPTTPTPVPREPGRKPLSSSRLGEVTGSP 345


>gi|170784838 secreted frizzled-related  protein 4 [Homo sapiens]
          Length = 346

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 46  LGEAWRDQ-----VDWSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRFPRQP 93
           L E WRDQ     + W   L++       +K  A    S ++PP PK  P  P
Sbjct: 272 LVEKWRDQLSKRSIQWEERLQEQRRTVQDKKKTAGRT-SRSNPPKPKGKPPAP 323


>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
           sapiens]
          Length = 213

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 13/59 (22%)

Query: 64  GLVKMSRKPRASSPLSNNHPPTPKRFP-------------RQPGREKGPIKEVPGTKGS 109
           GL      PR  S  + +HPP P  FP             R P R+  P     G +GS
Sbjct: 3   GLRASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREGS 61


>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
           sapiens]
          Length = 213

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 13/59 (22%)

Query: 64  GLVKMSRKPRASSPLSNNHPPTPKRFP-------------RQPGREKGPIKEVPGTKGS 109
           GL      PR  S  + +HPP P  FP             R P R+  P     G +GS
Sbjct: 3   GLRASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREGS 61


>gi|194018495 zinc finger protein 324B [Homo sapiens]
          Length = 544

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 17/64 (26%)

Query: 56  WSRLLRDAGLVKMSRKPRASSPLSNNHPP--------------TPKRFPRQPGREKGPIK 101
           W RLL  +   + S   R +SPL    PP               P R PR P R+K   +
Sbjct: 144 WERLLLGSRSDQASISLRLTSPL---RPPKSSRPREKTFTEYRVPGRQPRTPERQKPCAQ 200

Query: 102 EVPG 105
           EVPG
Sbjct: 201 EVPG 204


>gi|34915994 transducin-like enhancer protein 4 [Homo sapiens]
          Length = 773

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 67  KMSRKPRASSPLSNNHPPTPKRFPRQPGREKGP-IKEVPG 105
           ++S   ++++P+S ++ PTP+     PG    P ++ VPG
Sbjct: 309 ELSLNEKSTTPVSKSNTPTPRTDAPTPGSNSTPGLRPVPG 348


>gi|169217599 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 322

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 83  PPTPKRFPRQPGREKGPIKEVPGTKG 108
           PP P R PR  GR   P    PG +G
Sbjct: 195 PPPPPRAPRHAGRSGLPTAHRPGRQG 220


>gi|239757444 PREDICTED: similar to hCG2019076 [Homo sapiens]
          Length = 231

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 76  SPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKG 108
           SPL +  PP+P R PR P    G + +VP   G
Sbjct: 7   SPLPD--PPSPFRSPRSPRTRSGCLPQVPSGVG 37


>gi|239754026 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 422

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 64  GLVKMSRKPRASSPLSNNHPPTPKRFPRQPGREKGPIKE 102
           G +   ++PR SSP     PP  + +  +PGR +GP+ +
Sbjct: 153 GSLTEPKEPRRSSP-----PPRERGWECRPGRGRGPVSK 186


>gi|169216125 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 309

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 83  PPTPKRFPRQPGREKGPIKEVPGTKG 108
           PP P R PR  GR   P    PG +G
Sbjct: 182 PPPPPRAPRHAGRSGLPTAHRPGRQG 207


>gi|239751963 PREDICTED: similar to hCG2019076 [Homo sapiens]
          Length = 231

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 76  SPLSNNHPPTPKRFPRQPGREKGPIKEVPGTKG 108
           SPL +  PP+P R PR P    G + +VP   G
Sbjct: 7   SPLPD--PPSPFRSPRSPRTRSGCLPQVPSGVG 37


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,268,635
Number of Sequences: 37866
Number of extensions: 247748
Number of successful extensions: 1261
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 100
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press