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Search of human proteins with 193788659
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|193788659 cleavage and polyadenylation specific factor
4-like [Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|193788659 cleavage and polyadenylation specific factor 4-like... 397 e-111
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 265 2e-71
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 265 2e-71
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 92 3e-19
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 57 8e-09
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 55 3e-08
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 52 2e-07
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 49 3e-06
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 49 3e-06
gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens] 46 1e-05
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 44 6e-05
gi|46411174 muscleblind-like 1 isoform g [Homo sapiens] 44 1e-04
gi|46411172 muscleblind-like 1 isoform f [Homo sapiens] 44 1e-04
gi|46411170 muscleblind-like 1 isoform e [Homo sapiens] 44 1e-04
gi|46411168 muscleblind-like 1 isoform d [Homo sapiens] 44 1e-04
gi|46411166 muscleblind-like 1 isoform c [Homo sapiens] 44 1e-04
gi|46411164 muscleblind-like 1 isoform b [Homo sapiens] 44 1e-04
gi|41281591 muscleblind-like 1 isoform a [Homo sapiens] 44 1e-04
gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens] 43 1e-04
gi|46411180 muscleblind-like 2 isoform 3 [Homo sapiens] 41 5e-04
gi|21464125 muscleblind-like 2 isoform 1 [Homo sapiens] 41 5e-04
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 41 6e-04
gi|15812180 butyrate response factor 1 [Homo sapiens] 40 0.001
gi|30315649 muscleblind-like 3 isoform R [Homo sapiens] 39 0.002
gi|19387844 muscleblind-like 3 isoform G [Homo sapiens] 39 0.002
gi|118150660 erythropoietin 4 immediate early response [Homo sap... 37 0.007
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 37 0.009
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 37 0.009
gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo ... 37 0.009
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ... 37 0.009
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 397 bits (1020), Expect = e-111
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHD 60
MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHD
Sbjct: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHD 60
Query: 61 RGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFK 120
RGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFK
Sbjct: 61 RGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFK 120
Query: 121 SQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQFAQKIREFKLLPGSKI 179
SQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQFAQKIREFKLLPGSKI
Sbjct: 121 SQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQFAQKIREFKLLPGSKI 179
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 265 bits (676), Expect = 2e-71
Identities = 111/164 (67%), Positives = 130/164 (79%)
Query: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHD 60
MQE+IA ++ F E VE Q G LPF GMDKS +AVC FF K C KG +CPFRH
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI 60
Query: 61 RGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFK 120
GEK VVCKHWLRGLCKKGD C+FLH+YD+T+MPECYFYSKFG+CSNKEC FLH+ P K
Sbjct: 61 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 120
Query: 121 SQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQF 164
+DCPWYD+GFCK GPLC++RH R++C+NYLVGFCPEGP C+F
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKF 164
Score = 48.1 bits (113), Expect = 4e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 29 PFQGMD-KSASAVCNFFTKGLCEKGKLCPFRHDRGEKMVVCKHWLRGLCKKGDHCKFLH 86
PF +D +S C ++ +G C+ G LC RH R V+C ++L G C +G CKF+H
Sbjct: 111 PFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTR---RVICVNYLVGFCPEGPSCKFMH 166
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 265 bits (676), Expect = 2e-71
Identities = 111/164 (67%), Positives = 130/164 (79%)
Query: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHD 60
MQE+IA ++ F E VE Q G LPF GMDKS +AVC FF K C KG +CPFRH
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI 60
Query: 61 RGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFK 120
GEK VVCKHWLRGLCKKGD C+FLH+YD+T+MPECYFYSKFG+CSNKEC FLH+ P K
Sbjct: 61 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 120
Query: 121 SQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQF 164
+DCPWYD+GFCK GPLC++RH R++C+NYLVGFCPEGP C+F
Sbjct: 121 IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKF 164
Score = 48.1 bits (113), Expect = 4e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 29 PFQGMD-KSASAVCNFFTKGLCEKGKLCPFRHDRGEKMVVCKHWLRGLCKKGDHCKFLH 86
PF +D +S C ++ +G C+ G LC RH R V+C ++L G C +G CKF+H
Sbjct: 111 PFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTR---RVICVNYLVGFCPEGPSCKFMH 166
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 91.7 bits (226), Expect = 3e-19
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 41 CNFFTK-GLCEKGKLCPFRHDRGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPECYF 98
C ++ + G C +G+ CP+ HD EK+ VC ++RG CKK D C F H +MP C +
Sbjct: 673 CMYYNRFGRCNRGERCPYIHDP-EKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSY 731
Query: 99 YSKFGDCSNKECSFLHVKPAFKSQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYL-VGFCP 157
+ K G CSN C + HV + K++ C + +G+C G CK +H ++C ++ G CP
Sbjct: 732 FLK-GICSNSNCPYSHVYVSRKAEVCSDFLKGYCPLGAKCKKKHT--LLCPDFARRGACP 788
Query: 158 EGPKCQFAQKIRE 170
G +CQ + ++
Sbjct: 789 RGAQCQLLHRTQK 801
Score = 46.2 bits (108), Expect = 1e-05
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 22 QKGTGLLPFQG-MDKSASAVCNFFTKGLCEKGKLCPFRHDR-GEKMVVCKHWLRGLCKKG 79
+K G PF + K VC++F KG+C CP+ H K VC +L+G C G
Sbjct: 709 KKTDGTCPFSHHVSKEKMPVCSYFLKGICSNSN-CPYSHVYVSRKAEVCSDFLKGYCPLG 767
Query: 80 DHCKFLHQYDLTRMPECYFYSKFGDC-SNKECSFLH 114
CK H C +++ G C +C LH
Sbjct: 768 AKCKKKHTL------LCPDFARRGACPRGAQCQLLH 797
Score = 39.7 bits (91), Expect = 0.001
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 33/104 (31%)
Query: 92 RMPECYFYSKFGDCSNKE-CSFLH-----------VKPAFKSQD---------------- 123
R C +Y++FG C+ E C ++H V+ K D
Sbjct: 669 RKEYCMYYNRFGRCNRGERCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPV 728
Query: 124 CPWYDQGFCKDGPLCKYRHV----PRIMCLNYLVGFCPEGPKCQ 163
C ++ +G C + C Y HV +C ++L G+CP G KC+
Sbjct: 729 CSYFLKGICSNSN-CPYSHVYVSRKAEVCSDFLKGYCPLGAKCK 771
Score = 34.3 bits (77), Expect = 0.059
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 40 VCNFFTKGLCEKGKLCPFRHDRGEKMVVCKHWL-RGLCKKGDHCKFLHQ 87
VC+ F KG C G C +H ++C + RG C +G C+ LH+
Sbjct: 755 VCSDFLKGYCPLGAKCKKKH-----TLLCPDFARRGACPRGAQCQLLHR 798
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 57.0 bits (136), Expect = 8e-09
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 29 PFQGMDKSASAVCNFFTKGLCEKGKLCPFRHD--RGEKMVVCKHWLRGLCKKGDHCKFLH 86
P Q DK +C +F +G C G C F HD +K +CK ++ G C + ++C ++H
Sbjct: 384 PHQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMH 443
Query: 87 QYDLTRMPECYFYSKFGDCSN-KECSFLH 114
D C Y G+C N +C F H
Sbjct: 444 G-DF----PCKLYHTTGNCINGDDCMFSH 467
Score = 49.3 bits (116), Expect = 2e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 59 HDRGEKM--VVCKHWLRGLCKKGDHCKFLHQYDLTRMPE-CYFYSKFGDCSNKE-CSFLH 114
H + +K V+CK+++ G C GDHC F H +L + E C FY G C+ E C ++H
Sbjct: 385 HQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYIT-GFCARAENCPYMH 443
Query: 115 VKPAFKSQDCPWYDQGFCKDGPLCKYRHVP 144
K ++ G C +G C + H P
Sbjct: 444 GDFPCKL----YHTTGNCINGDDCMFSHDP 469
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 55.1 bits (131), Expect = 3e-08
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 33 MDKSASAVCNFFTKGLCEKGKLCPFRHDR--GEKMVVCKHWLRGLCKKGDHCKFLHQYDL 90
++ +C +F +G C KG C F HD ++ +CK +L+G C KG++C ++H
Sbjct: 270 VEHKGKQICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH---- 325
Query: 91 TRMPECYFYSKFGDC-SNKECSFLH 114
P C FY C C F H
Sbjct: 326 NEFP-CKFYHSGAKCYQGDNCKFSH 349
Score = 51.6 bits (122), Expect = 4e-07
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 67 VCKHWLRGLCKKGDHCKFLHQYDLTRMPE-CYFYSKFGDCSNKE-CSFLHVKPAFKSQDC 124
+CK++L G C KGD CKF H +L + E C FY + G C+ E C ++H C
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQ-GYCTKGENCIYMH-----NEFPC 330
Query: 125 PWYDQGF-CKDGPLCKYRH 142
+Y G C G CK+ H
Sbjct: 331 KFYHSGAKCYQGDNCKFSH 349
Score = 33.5 bits (75), Expect = 0.100
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 122 QDCPWYDQGFCKDGPLCKYRHVPRI-----MCLNYLVGFCPEGPKC 162
Q C ++ +G C G CK+ H + +C YL G+C +G C
Sbjct: 276 QICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENC 321
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 52.4 bits (124), Expect = 2e-07
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 67 VCKHWLRGLCKKGDHCKFLHQYDLTRMPE-CYFYSKFGDCSNKE-CSFLHVKPAFKSQDC 124
+CK++L C KGD CKF H ++ + E C FY + G C+ E C +LH C
Sbjct: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQ-GYCTRGENCLYLH-----NEYPC 249
Query: 125 PWYDQGF-CKDGPLCKYRHVP 144
+Y G C G CK+ H P
Sbjct: 250 KFYHTGTKCYQGEYCKFSHAP 270
Score = 52.0 bits (123), Expect = 3e-07
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 33 MDKSASAVCNFFTKGLCEKGKLCPFRHDRG--EKMVVCKHWLRGLCKKGDHCKFLH-QYD 89
+++ +C +F + C KG C F HD +K +CK +++G C +G++C +LH +Y
Sbjct: 189 VERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEY- 247
Query: 90 LTRMPECYFYSKFGDCSNKE-CSFLHVKPAFKSQD 123
C FY C E C F H ++Q+
Sbjct: 248 -----PCKFYHTGTKCYQGEYCKFSHAPLTPETQE 277
Score = 31.6 bits (70), Expect = 0.38
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 122 QDCPWYDQGFCKDGPLCKYRHVPRI-----MCLNYLVGFCPEGPKCQF 164
Q C ++ + C G CK+ H I MC Y+ G+C G C +
Sbjct: 195 QICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLY 242
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 48.5 bits (114), Expect = 3e-06
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 41 CNFFTKGLCEKGKLCPFRHDRGEK--MVVCKHWLRGLCKKGDHCKFLHQYDL 90
C +F G+C++G C + HD + VVCK++ RG C GD C++ H L
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPL 112
Score = 42.4 bits (98), Expect = 2e-04
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 27/79 (34%)
Query: 64 KMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQD 123
K V C++++ G+CK+GD+C++ H DL+ P S
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSH--DLSDSP-------------------------YSVV 89
Query: 124 CPWYDQGFCKDGPLCKYRH 142
C ++ +G+C G C+Y H
Sbjct: 90 CKYFQRGYCIYGDRCRYEH 108
Score = 34.3 bits (77), Expect = 0.059
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 120 KSQDCPWYDQGFCKDGPLCKYRH-----VPRIMCLNYLVGFCPEGPKCQF 164
K C ++ G CK+G C+Y H ++C + G+C G +C++
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRY 106
Score = 28.5 bits (62), Expect = 3.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 34 DKSASAVCNFFTKGLCEKGKLCPFRHDR 61
D S VC +F +G C G C + H +
Sbjct: 83 DSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 48.5 bits (114), Expect = 3e-06
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 41 CNFFTKGLCEKGKLCPFRHDRGEK--MVVCKHWLRGLCKKGDHCKFLHQYDL 90
C +F G+C++G C + HD + VVCK++ RG C GD C++ H L
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPL 112
Score = 42.4 bits (98), Expect = 2e-04
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 27/79 (34%)
Query: 64 KMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQD 123
K V C++++ G+CK+GD+C++ H DL+ P S
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSH--DLSDSP-------------------------YSVV 89
Query: 124 CPWYDQGFCKDGPLCKYRH 142
C ++ +G+C G C+Y H
Sbjct: 90 CKYFQRGYCIYGDRCRYEH 108
Score = 34.3 bits (77), Expect = 0.059
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 120 KSQDCPWYDQGFCKDGPLCKYRH-----VPRIMCLNYLVGFCPEGPKCQF 164
K C ++ G CK+G C+Y H ++C + G+C G +C++
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRY 106
Score = 28.5 bits (62), Expect = 3.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 34 DKSASAVCNFFTKGLCEKGKLCPFRHDR 61
D S VC +F +G C G C + H +
Sbjct: 83 DSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
>gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens]
Length = 810
Score = 46.2 bits (108), Expect = 1e-05
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 28 LPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHDRGE--KMVVCKHWLRGLCKKGDHCKFL 85
+P QG D C FF C KG CPFRH VC W G C + C+F
Sbjct: 1 MPNQGED------CYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFR-QVCRFR 53
Query: 86 H-QYDLTRMP-ECYFYSKFGDCSNKECSFLH 114
H + D R CY+ ++ C C+F H
Sbjct: 54 HMEIDKKRSEIPCYWENQPTGCQKLNCAFHH 84
Score = 30.8 bits (68), Expect = 0.65
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 68 CKHWLRGLCKKGDHCKFLH-QYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQDCPW 126
C + C KGD C F H + + C + + G C + C F H++ K + P
Sbjct: 8 CYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQE-GRCFRQVCRFRHMEIDKKRSEIPC 66
Query: 127 Y 127
Y
Sbjct: 67 Y 67
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 44.3 bits (103), Expect = 6e-05
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 41 CNFFTKGLCEKGKLCPFRHD--RGEKMVVCKHWLRGLCKKGDHCKFLH 86
C +F G+C +G C F HD + +CK++ +G C G C++ H
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
Score = 40.0 bits (92), Expect = 0.001
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 27/79 (34%)
Query: 64 KMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQD 123
K + C++++ G+C++G C F H D +N + S +
Sbjct: 4 KQITCRYFMHGVCREGSQCLFSH-----------------DLANSKPSTI---------- 36
Query: 124 CPWYDQGFCKDGPLCKYRH 142
C +Y +G+C G C+Y H
Sbjct: 37 CKYYQKGYCAYGTRCRYDH 55
Score = 35.0 bits (79), Expect = 0.034
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 120 KSQDCPWYDQGFCKDGPLCKYRH-----VPRIMCLNYLVGFCPEGPKCQF 164
K C ++ G C++G C + H P +C Y G+C G +C++
Sbjct: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRY 53
Score = 27.7 bits (60), Expect = 5.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 38 SAVCNFFTKGLCEKGKLCPFRHDR 61
S +C ++ KG C G C + H R
Sbjct: 34 STICKYYQKGYCAYGTRCRYDHTR 57
>gi|46411174 muscleblind-like 1 isoform g [Homo sapiens]
Length = 342
Score = 43.5 bits (101), Expect = 1e-04
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 56 PFRHDRGEKMVVCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKE 109
P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CSFLHVKPAFKSQ 122
C +LH P K+Q
Sbjct: 66 CKYLHPPPHLKTQ 78
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 61 RGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
R +++ VC+ + RG C +G++ C+F H D T + C Y K G CS ++C +
Sbjct: 178 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKY 236
Query: 113 LH 114
H
Sbjct: 237 FH 238
>gi|46411172 muscleblind-like 1 isoform f [Homo sapiens]
Length = 340
Score = 43.5 bits (101), Expect = 1e-04
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 56 PFRHDRGEKMVVCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKE 109
P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CSFLHVKPAFKSQ 122
C +LH P K+Q
Sbjct: 66 CKYLHPPPHLKTQ 78
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 61 RGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
R +++ VC+ + RG C +G++ C+F H D T + C Y K G CS ++C +
Sbjct: 178 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKY 236
Query: 113 LH 114
H
Sbjct: 237 FH 238
>gi|46411170 muscleblind-like 1 isoform e [Homo sapiens]
Length = 314
Score = 43.5 bits (101), Expect = 1e-04
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 56 PFRHDRGEKMVVCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKE 109
P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CSFLHVKPAFKSQ 122
C +LH P K+Q
Sbjct: 66 CKYLHPPPHLKTQ 78
Score = 38.1 bits (87), Expect = 0.004
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 66 VVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSFLH 114
VVC+ + RG C +G++ C+F H D T + C Y K G CS ++C + H
Sbjct: 115 VVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFH 170
>gi|46411168 muscleblind-like 1 isoform d [Homo sapiens]
Length = 302
Score = 43.5 bits (101), Expect = 1e-04
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 56 PFRHDRGEKMVVCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKE 109
P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CSFLHVKPAFKSQ 122
C +LH P K+Q
Sbjct: 66 CKYLHPPPHLKTQ 78
Score = 38.1 bits (87), Expect = 0.004
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 66 VVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSFLH 114
VVC+ + RG C +G++ C+F H D T + C Y K G CS ++C + H
Sbjct: 115 VVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFH 170
>gi|46411166 muscleblind-like 1 isoform c [Homo sapiens]
Length = 388
Score = 43.5 bits (101), Expect = 1e-04
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 56 PFRHDRGEKMVVCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKE 109
P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CSFLHVKPAFKSQ 122
C +LH P K+Q
Sbjct: 66 CKYLHPPPHLKTQ 78
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 61 RGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
R +++ VC+ + RG C +G++ C+F H D T + C Y K G CS ++C +
Sbjct: 178 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKY 236
Query: 113 LH 114
H
Sbjct: 237 FH 238
>gi|46411164 muscleblind-like 1 isoform b [Homo sapiens]
Length = 370
Score = 43.5 bits (101), Expect = 1e-04
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 56 PFRHDRGEKMVVCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKE 109
P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CSFLHVKPAFKSQ 122
C +LH P K+Q
Sbjct: 66 CKYLHPPPHLKTQ 78
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 61 RGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
R +++ VC+ + RG C +G++ C+F H D T + C Y K G CS ++C +
Sbjct: 178 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKY 236
Query: 113 LH 114
H
Sbjct: 237 FH 238
>gi|41281591 muscleblind-like 1 isoform a [Homo sapiens]
Length = 382
Score = 43.5 bits (101), Expect = 1e-04
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 56 PFRHDRGEKMVVCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKE 109
P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS +
Sbjct: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
Query: 110 CSFLHVKPAFKSQ 122
C +LH P K+Q
Sbjct: 66 CKYLHPPPHLKTQ 78
Score = 39.3 bits (90), Expect = 0.002
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 61 RGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
R +++ VC+ + RG C +G++ C+F H D T + C Y K G CS ++C +
Sbjct: 178 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKY 236
Query: 113 LH 114
H
Sbjct: 237 FH 238
>gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens]
Length = 701
Score = 43.1 bits (100), Expect = 1e-04
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 40 VCNFFTKGLCE---KGKLCPFRHDRGEKMVVCKHWLRGLCKKG-DH------CKFLHQYD 89
+C F G C+ GK C R + +H L L G DH C+ L Q D
Sbjct: 94 LCRFMVYGACKFLRAGKNC-----RNSHSLTTEHNLSVLRTHGVDHLSYNELCQLLFQND 148
Query: 90 LTRMPE-CYFYSKFGDCSNKECSFLHVKPAFKSQDCPWYDQGFCKDGPLCKYRH 142
+PE C Y+K GD + C+F K K C ++ QG CK G CK H
Sbjct: 149 PWLLPEICQHYNK-GDGPHGSCAFQ--KQCIKLHICQYFLQGECKFGTSCKRSH 199
Score = 32.7 bits (73), Expect = 0.17
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 40 VCNFFTKGLCEKGKLCPFRHDRGEKMVVCKHWLRGLCKKGDHCKFLHQYD---------- 89
+C + KG G C F+ + K+ +C+++L+G CK G CK H +
Sbjct: 155 ICQHYNKGDGPHGS-CAFQK-QCIKLHICQYFLQGECKFGTSCKRSHDFSNSENLEKLEK 212
Query: 90 -------LTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQ 122
++R+P Y D NK + V P F Q
Sbjct: 213 LGMSSDLVSRLPT--IYRNAHDIKNKSSAPSRVPPLFVPQ 250
>gi|46411180 muscleblind-like 2 isoform 3 [Homo sapiens]
Length = 361
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 54 LCPFRHDRGEKMVVCKHWLRGLCKKGDH-CKFLH-----QYDLTRMPECYFYSKFGDCSN 107
+ P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS
Sbjct: 5 VAPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIAC-FDSLKGRCSR 63
Query: 108 KECSFLHVKPAFKSQ 122
+ C +LH K+Q
Sbjct: 64 ENCKYLHPPTHLKTQ 78
Score = 37.0 bits (84), Expect = 0.009
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 61 RGEKMVVCKHWLRGLCKKGD-HCKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
R +K+ VC+ + RG C +G+ C+F H D T + C Y K G C ++C +
Sbjct: 175 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIK-GRCMREKCKY 233
Query: 113 LH 114
H
Sbjct: 234 FH 235
>gi|21464125 muscleblind-like 2 isoform 1 [Homo sapiens]
Length = 367
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 54 LCPFRHDRGEKMVVCKHWLRGLCKKGDH-CKFLH-----QYDLTRMPECYFYSKFGDCSN 107
+ P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS
Sbjct: 5 VAPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIAC-FDSLKGRCSR 63
Query: 108 KECSFLHVKPAFKSQ 122
+ C +LH K+Q
Sbjct: 64 ENCKYLHPPTHLKTQ 78
Score = 37.0 bits (84), Expect = 0.009
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 61 RGEKMVVCKHWLRGLCKKGD-HCKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
R +K+ VC+ + RG C +G+ C+F H D T + C Y K G C ++C +
Sbjct: 175 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIK-GRCMREKCKY 233
Query: 113 LH 114
H
Sbjct: 234 FH 235
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 40.8 bits (94), Expect = 6e-04
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 25/130 (19%)
Query: 36 SASAVCNFFTKGLCEKGKLCPFRH-DRGE---------KMVVCKHWLRGLCKKGDHCKFL 85
S+ A+C F + +C++GK C +RH D E + + C + C + +C+F+
Sbjct: 37 SSDAICRDFLRNVCKRGKRCRYRHPDMSEVSNLGVSKNEFIFCHDFQNKECSR-PNCRFI 95
Query: 86 HQYDLTRMPECYFYSKFGD----CSNKECSFLHVKPAFKSQD------CPWYDQGFCKDG 135
H + Y K G+ K + L + PA C + +G C+ G
Sbjct: 96 H----GSKEDEDGYKKTGELPPRLRQKVAAGLGLSPADLPNGKEEVPICRDFLKGDCQRG 151
Query: 136 PLCKYRHVPR 145
CK+RH+ R
Sbjct: 152 AKCKFRHLQR 161
Score = 40.4 bits (93), Expect = 8e-04
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 46/138 (33%)
Query: 67 VCKHWLRGLCKKGDHCKFLHQYDLTRMP-------ECYFYSKFG--DCSNKECSFLHVKP 117
+C+ +LR +CK+G C++ H D++ + E F F +CS C F+H
Sbjct: 41 ICRDFLRNVCKRGKRCRYRHP-DMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHGS- 98
Query: 118 AFKSQDCPWYDQGFCKDGPLCKYRHVPRI-----------------------MCLNYLVG 154
+D + G+ K G L PR+ +C ++L G
Sbjct: 99 ---KED----EDGYKKTGEL-----PPRLRQKVAAGLGLSPADLPNGKEEVPICRDFLKG 146
Query: 155 FCPEGPKCQFAQKIREFK 172
C G KC+F R+F+
Sbjct: 147 DCQRGAKCKFRHLQRDFE 164
Score = 31.6 bits (70), Expect = 0.38
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 10 RFTFAFEKDVEMQKGTGLLPFQGMDKSASA----------------VCNFFTKGLCEKGK 53
RF ++D + K TG LP + K A+ +C F KG C++G
Sbjct: 93 RFIHGSKEDEDGYKKTGELPPRLRQKVAAGLGLSPADLPNGKEEVPICRDFLKGDCQRGA 152
Query: 54 LCPFRH 59
C FRH
Sbjct: 153 KCKFRH 158
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 40.0 bits (92), Expect = 0.001
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 119 FKSQDC-PWYDQGFCKDGPLCKYRH-VPRIMCLN-------------YLVGFCPEGPKCQ 163
+K++ C P+ + G CK G C++ H + + L + +GFCP GP+C
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174
Query: 164 FAQKIREFKLLPGSK 178
F E + L G++
Sbjct: 175 FIHNAEERRALAGAR 189
>gi|30315649 muscleblind-like 3 isoform R [Homo sapiens]
Length = 334
Score = 38.9 bits (89), Expect = 0.002
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 67 VCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFK 120
VC+ + RG C + D CKF H + R+ C F S G C+ + C +LH P K
Sbjct: 19 VCREFQRGTCSRADADCKFAHPPRVCHVENGRVVAC-FDSLKGRCTRENCKYLHPPPHLK 77
Query: 121 SQ 122
+Q
Sbjct: 78 TQ 79
Score = 38.1 bits (87), Expect = 0.004
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 61 RGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
R +K+ VC+ + RG C +G++ C++ H D + + C Y K G CS ++C +
Sbjct: 173 RSDKLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIK-GRCSREKCKY 231
Query: 113 LH 114
H
Sbjct: 232 FH 233
>gi|19387844 muscleblind-like 3 isoform G [Homo sapiens]
Length = 354
Score = 38.9 bits (89), Expect = 0.002
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 67 VCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFK 120
VC+ + RG C + D CKF H + R+ C F S G C+ + C +LH P K
Sbjct: 19 VCREFQRGTCSRADADCKFAHPPRVCHVENGRVVAC-FDSLKGRCTRENCKYLHPPPHLK 77
Query: 121 SQ 122
+Q
Sbjct: 78 TQ 79
Score = 38.1 bits (87), Expect = 0.004
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 61 RGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
R +K+ VC+ + RG C +G++ C++ H D + + C Y K G CS ++C +
Sbjct: 173 RSDKLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIK-GRCSREKCKY 231
Query: 113 LH 114
H
Sbjct: 232 FH 233
>gi|118150660 erythropoietin 4 immediate early response [Homo
sapiens]
Length = 426
Score = 37.4 bits (85), Expect = 0.007
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 64 KMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKE 109
K VVC + +G C KGD CKF H DLT +C S + D ++E
Sbjct: 101 KSVVCAFFKQGQCTKGDKCKFSH--DLTLERKCEKRSVYIDARDEE 144
Score = 33.1 bits (74), Expect = 0.13
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 38 SAVCNFFTKGLCEKGKLCPFRHD 60
S VC FF +G C KG C F HD
Sbjct: 102 SVVCAFFKQGQCTKGDKCKFSHD 124
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 39/108 (36%)
Query: 68 CKHWLRGLCKKGDHCKFLHQYDLTR-MPECYFYSKF----------GDCSNKECSFLHVK 116
CK+W CK GD C + H + P C F K C+ +C F HV
Sbjct: 596 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 653
Query: 117 --------------------------PAFKSQDCPWYDQGFCKDGPLC 138
PA K +CP+Y C+ C
Sbjct: 654 RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQC 701
Score = 27.7 bits (60), Expect = 5.5
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 107 NKECSFLHV--KPAFKSQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQF 164
N E S L V KP + C ++ CK+G C Y H + C P C+F
Sbjct: 577 NAEMSELSVAQKPEKLLERCKYWPA--CKNGDECAYHHP---------ISPCKAFPNCKF 625
Query: 165 AQK 167
A+K
Sbjct: 626 AEK 628
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 39/108 (36%)
Query: 68 CKHWLRGLCKKGDHCKFLHQYDLTR-MPECYFYSKF----------GDCSNKECSFLHVK 116
CK+W CK GD C + H + P C F K C+ +C F HV
Sbjct: 601 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 658
Query: 117 --------------------------PAFKSQDCPWYDQGFCKDGPLC 138
PA K +CP+Y C+ C
Sbjct: 659 RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQC 706
Score = 30.8 bits (68), Expect = 0.65
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 103 GDCSNKECSFLHV--KPAFKSQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGP 160
G SN E S L V KP + C ++ CK+G C Y H + C P
Sbjct: 578 GSFSNAEMSELSVAQKPEKLLERCKYWPA--CKNGDECAYHHP---------ISPCKAFP 626
Query: 161 KCQFAQK 167
C+FA+K
Sbjct: 627 NCKFAEK 633
>gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo
sapiens]
Length = 306
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 39/108 (36%)
Query: 68 CKHWLRGLCKKGDHCKFLHQYDLTR-MPECYFYSKF----------GDCSNKECSFLHVK 116
CK+W CK GD C + H + P C F K C+ +C F HV
Sbjct: 172 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 229
Query: 117 --------------------------PAFKSQDCPWYDQGFCKDGPLC 138
PA K +CP+Y C+ C
Sbjct: 230 RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQC 277
Score = 26.9 bits (58), Expect = 9.4
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 106 SNKECSFLHV--KPAFKSQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQ 163
S E S L V KP + C ++ CK+G C Y H + C P C+
Sbjct: 152 SQAEMSELSVAQKPEKLLERCKYWPA--CKNGDECAYHHP---------ISPCKAFPNCK 200
Query: 164 FAQK 167
FA+K
Sbjct: 201 FAEK 204
>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
Length = 579
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 39/108 (36%)
Query: 68 CKHWLRGLCKKGDHCKFLHQYDLTR-MPECYFYSKF----------GDCSNKECSFLHVK 116
CK+W CK GD C + H + P C F K C+ +C F HV
Sbjct: 445 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 502
Query: 117 --------------------------PAFKSQDCPWYDQGFCKDGPLC 138
PA K +CP+Y C+ C
Sbjct: 503 RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQC 550
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.144 0.498
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,038,082
Number of Sequences: 37866
Number of extensions: 390350
Number of successful extensions: 1012
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 171
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.