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Search of human proteins with 190886439
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190886439 hypothetical protein LOC138240 [Homo sapiens]
(161 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190886439 hypothetical protein LOC138240 [Homo sapiens] 341 1e-94
gi|19923082 expressed in prostate and testis [Homo sapiens] 42 3e-04
gi|221554530 prostate and testis expressed 4 [Homo sapiens] 39 0.002
gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens] 33 0.11
gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo... 30 0.69
gi|222136622 prostate and testis expressed 3 [Homo sapiens] 30 0.90
gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo... 29 1.5
gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo... 29 1.5
gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo... 29 1.5
gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo... 29 1.5
gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo... 29 1.5
gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo... 29 1.5
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 29 2.0
gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens] 29 2.0
gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens] 29 2.0
gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens] 29 2.0
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens] 29 2.0
gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens] 29 2.0
gi|91208426 U5 snRNP-specific protein [Homo sapiens] 28 2.6
gi|148746181 testis enhanced gene transcript (BAX inhibitor 1) i... 27 5.8
gi|148746209 testis enhanced gene transcript (BAX inhibitor 1) i... 27 5.8
gi|192807300 calcium channel, voltage-dependent, L type, alpha 1... 27 7.6
gi|192807298 calcium channel, voltage-dependent, L type, alpha 1... 27 7.6
gi|4502527 calcium channel, voltage-dependent, L type, alpha 1D ... 27 7.6
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 27 7.6
gi|20127446 integrin, beta 5 [Homo sapiens] 27 7.6
gi|169209574 PREDICTED: hypothetical protein LOC400558 [Homo sap... 27 9.9
gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo sap... 27 9.9
gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo sap... 27 9.9
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 27 9.9
>gi|190886439 hypothetical protein LOC138240 [Homo sapiens]
Length = 161
Score = 341 bits (875), Expect = 1e-94
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MKKIEISGTCLSFHLLFGLEIRMRRIVFAGVILFRLLGVILFRLLGVILFGRLGDLGTCQ 60
MKKIEISGTCLSFHLLFGLEIRMRRIVFAGVILFRLLGVILFRLLGVILFGRLGDLGTCQ
Sbjct: 1 MKKIEISGTCLSFHLLFGLEIRMRRIVFAGVILFRLLGVILFRLLGVILFGRLGDLGTCQ 60
Query: 61 TKPGQYWKEEVHIQDVGGLICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQW 120
TKPGQYWKEEVHIQDVGGLICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQW
Sbjct: 61 TKPGQYWKEEVHIQDVGGLICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQW 120
Query: 121 YSVKGCTKNTSECFKSTLVKRILQLHELVTTHCCNHSLCNF 161
YSVKGCTKNTSECFKSTLVKRILQLHELVTTHCCNHSLCNF
Sbjct: 121 YSVKGCTKNTSECFKSTLVKRILQLHELVTTHCCNHSLCNF 161
>gi|19923082 expressed in prostate and testis [Homo sapiens]
Length = 126
Score = 41.6 bits (96), Expect = 3e-04
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 81 CRACNLSLPFHGCLLDLGTCQAEPGQYCK-EEVHIQGGIQWYSVKGCTKNTSECFKSTLV 139
CR C+L P C G C A + C + + G W + GC KN ++ V
Sbjct: 48 CRMCHLQFPGEKCSRGRGICTATTEEACMVGRMFKRDGNPWLTFMGCLKNCAD------V 101
Query: 140 KRILQLHELVTTHCC-NHSLCN 160
K I LV CC +H LCN
Sbjct: 102 KGIRWSVYLVNFRCCRSHDLCN 123
>gi|221554530 prostate and testis expressed 4 [Homo sapiens]
Length = 98
Score = 38.9 bits (89), Expect = 0.002
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 71 VHIQDVGGLICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNT 130
+++++V GL C C + + C+ GTC A+ + C + +G YS C
Sbjct: 15 LYLKEVMGLKCNTCIYTEGWK-CMAGRGTCIAKENELCSTTAYFRGDKHMYSTHMC---K 70
Query: 131 SECFKSTLVKRILQLHELVTTHCCNHSLCN 160
+C + KR L L T CC+ + CN
Sbjct: 71 YKCREEESSKRGL----LRVTLCCDRNFCN 96
>gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens]
Length = 125
Score = 33.1 bits (74), Expect = 0.11
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 81 CRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQW-YSVKGCTKNTSECFKSTLV 139
C +C +P GC+ D +C+ EPGQ C H G W +S C C +
Sbjct: 22 CHSC-YKVPVLGCV-DRQSCRLEPGQQCL-TTHAYLGKMWVFSNLRCGTPEEPC-QEAFN 77
Query: 140 KRILQLHELVTTHCCNHSLCN 160
+ +L T CCN CN
Sbjct: 78 QTNRKLGLTYNTTCCNKDNCN 98
>gi|9955935 acrosomal vesicle protein 1 isoform j precursor [Homo
sapiens]
Length = 121
Score = 30.4 bits (67), Expect = 0.69
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 70 EVHIQDVGGLI--CRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCT 127
+ +Q + G I C C CL GTC + Q C + +GG + V+GC
Sbjct: 33 QTSVQQLPGTILNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC- 91
Query: 128 KNTSECFKSTLVKRILQLHELVTTHCCNHSLCN 160
+ C L ++ + C N S CN
Sbjct: 92 --ENMCPSMNLFSHGTRMQIIC---CRNQSFCN 119
>gi|222136622 prostate and testis expressed 3 [Homo sapiens]
Length = 98
Score = 30.0 bits (66), Expect = 0.90
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 76 VGGLICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNTSECFK 135
V L C C+L C G C A+ G+ C Q S C K C
Sbjct: 18 VTSLQCITCHLRTRTDRCRRGFGVCTAQKGEACMLLRIYQRNTLQISYMVCQK---FCRD 74
Query: 136 STLVKRILQLHELVTTHCCNHSLCNF 161
T R + CCN++ CNF
Sbjct: 75 MTFDLR----NRTYVHTCCNYNYCNF 96
>gi|9955929 acrosomal vesicle protein 1 isoform c precursor [Homo
sapiens]
Length = 210
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 79 LICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNTSECFKSTL 138
L C C CL GTC + Q C + +GG + V+GC + C L
Sbjct: 133 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC---ENMCPSMNL 189
Query: 139 VKRILQLHELVTTHCCNHSLCN 160
++ + C N S CN
Sbjct: 190 FSHGTRMQIIC---CRNQSFCN 208
>gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo
sapiens]
Length = 176
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 79 LICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNTSECFKSTL 138
L C C CL GTC + Q C + +GG + V+GC + C L
Sbjct: 99 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC---ENMCPSMNL 155
Query: 139 VKRILQLHELVTTHCCNHSLCN 160
++ + C N S CN
Sbjct: 156 FSHGTRMQIIC---CRNQSFCN 174
>gi|4501879 acrosomal vesicle protein 1 isoform a precursor [Homo
sapiens]
Length = 265
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 79 LICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNTSECFKSTL 138
L C C CL GTC + Q C + +GG + V+GC + C L
Sbjct: 188 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC---ENMCPSMNL 244
Query: 139 VKRILQLHELVTTHCCNHSLCN 160
++ + C N S CN
Sbjct: 245 FSHGTRMQIIC---CRNQSFCN 263
>gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo
sapiens]
Length = 170
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 79 LICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNTSECFKSTL 138
L C C CL GTC + Q C + +GG + V+GC + C L
Sbjct: 93 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC---ENMCPSMNL 149
Query: 139 VKRILQLHELVTTHCCNHSLCN 160
++ + C N S CN
Sbjct: 150 FSHGTRMQIIC---CRNQSFCN 168
>gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo
sapiens]
Length = 195
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 79 LICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNTSECFKSTL 138
L C C CL GTC + Q C + +GG + V+GC + C L
Sbjct: 118 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC---ENMCPSMNL 174
Query: 139 VKRILQLHELVTTHCCNHSLCN 160
++ + C N S CN
Sbjct: 175 FSHGTRMQIIC---CRNQSFCN 193
>gi|9955927 acrosomal vesicle protein 1 isoform b precursor [Homo
sapiens]
Length = 246
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 79 LICRACNLSLPFHGCLLDLGTCQAEPGQYCKEEVHIQGGIQWYSVKGCTKNTSECFKSTL 138
L C C CL GTC + Q C + +GG + V+GC + C L
Sbjct: 169 LNCYTCAYMNDQGKCLRGEGTCITQNSQQCMLKKIFEGGKLQFMVQGC---ENMCPSMNL 225
Query: 139 VKRILQLHELVTTHCCNHSLCN 160
++ + C N S CN
Sbjct: 226 FSHGTRMQIIC---CRNQSFCN 244
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 28.9 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 81 CRACNLSLPFHG----CLLDLGTCQAEPGQYC 108
CR C + + G C LD TC+A GQ C
Sbjct: 576 CRVCECNPNYTGSACDCSLDTSTCEASNGQIC 607
>gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]
Length = 789
Score = 28.9 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 81 CRACNLSLPFHG----CLLDLGTCQAEPGQYC 108
CR C + + G C LD TC+A GQ C
Sbjct: 576 CRVCECNPNYTGSACDCSLDTSTCEASNGQIC 607
>gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 28.9 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 81 CRACNLSLPFHG----CLLDLGTCQAEPGQYC 108
CR C + + G C LD TC+A GQ C
Sbjct: 576 CRVCECNPNYTGSACDCSLDTSTCEASNGQIC 607
>gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 28.9 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 81 CRACNLSLPFHG----CLLDLGTCQAEPGQYC 108
CR C + + G C LD TC+A GQ C
Sbjct: 576 CRVCECNPNYTGSACDCSLDTSTCEASNGQIC 607
>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
Length = 819
Score = 28.9 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 81 CRACNLSLPFHG----CLLDLGTCQAEPGQYC 108
CR C + + G C LD TC+A GQ C
Sbjct: 576 CRVCECNPNYTGSACDCSLDTSTCEASNGQIC 607
>gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens]
Length = 801
Score = 28.9 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 81 CRACNLSLPFHG----CLLDLGTCQAEPGQYC 108
CR C + + G C LD TC+A GQ C
Sbjct: 576 CRVCECNPNYTGSACDCSLDTSTCEASNGQIC 607
>gi|91208426 U5 snRNP-specific protein [Homo sapiens]
Length = 2335
Score = 28.5 bits (62), Expect = 2.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 61 TKPGQYWKEEVHIQDVGGLICRACNLSLPFHGCL 94
T+ G EVH+ D ++ + L LPF CL
Sbjct: 1864 TRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACL 1897
>gi|148746181 testis enhanced gene transcript (BAX inhibitor 1)
isoform 2 [Homo sapiens]
Length = 295
Score = 27.3 bits (59), Expect = 5.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 9 TCLSFHLLFGLEIRMRRIVFAGVILFRLLGVILFRLLGVILFGRL 53
TC + L+ R R +F G IL L ++L LG + FG +
Sbjct: 184 TCFTLSALYA---RRRSYLFLGGILMSALSLLLLSSLGNVFFGSI 225
>gi|148746209 testis enhanced gene transcript (BAX inhibitor 1)
isoform 1 [Homo sapiens]
Length = 237
Score = 27.3 bits (59), Expect = 5.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 9 TCLSFHLLFGLEIRMRRIVFAGVILFRLLGVILFRLLGVILFGRL 53
TC + L+ R R +F G IL L ++L LG + FG +
Sbjct: 126 TCFTLSALYA---RRRSYLFLGGILMSALSLLLLSSLGNVFFGSI 167
>gi|192807300 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform b [Homo sapiens]
Length = 2161
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 29 AGVILFRLLGVILFRLLGVILFGRLGDLGTCQTK 62
A ++L L +I+F LLG+ LFG + QTK
Sbjct: 651 ASLLLLLFLFIIIFSLLGMQLFGGKFNFDETQTK 684
>gi|192807298 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform c [Homo sapiens]
Length = 2137
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 29 AGVILFRLLGVILFRLLGVILFGRLGDLGTCQTK 62
A ++L L +I+F LLG+ LFG + QTK
Sbjct: 651 ASLLLLLFLFIIIFSLLGMQLFGGKFNFDETQTK 684
>gi|4502527 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform a [Homo sapiens]
Length = 2181
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 29 AGVILFRLLGVILFRLLGVILFGRLGDLGTCQTK 62
A ++L L +I+F LLG+ LFG + QTK
Sbjct: 671 ASLLLLLFLFIIIFSLLGMQLFGGKFNFDETQTK 704
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 26.9 bits (58), Expect = 7.6
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 75 DVGGLICRACNLSLPFHGCLLDLGTCQAEP---GQYCKEEVHIQGGIQWYSVKGCTKNTS 131
D+ G ACNL GC+ + G C + G C E ++ + GC S
Sbjct: 1093 DLRGTSGDACNLEQGLCGCVEETGACPCKENVFGPQCNECREGTFALRADNPLGC----S 1148
Query: 132 ECFKSTLVKRILQLHELVTT 151
CF S L +L + V T
Sbjct: 1149 PCFCSGLSHLCSELEDYVRT 1168
>gi|20127446 integrin, beta 5 [Homo sapiens]
Length = 799
Score = 26.9 bits (58), Expect = 7.6
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 81 CRACNLSLPFHG----CLLDLGTCQAEPGQYCKEEVH 113
C C + G C D+ TC+ GQ C E H
Sbjct: 571 CGECKCHAGYIGDNCNCSTDISTCRGRDGQICSERGH 607
>gi|169209574 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 26.6 bits (57), Expect = 9.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 97 LGTCQAEPGQYCKEEVHIQGGIQW 120
+GTC+A P C ++ G++W
Sbjct: 156 VGTCRASPQSPCHRHPSLRSGLEW 179
>gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 26.6 bits (57), Expect = 9.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 97 LGTCQAEPGQYCKEEVHIQGGIQW 120
+GTC+A P C ++ G++W
Sbjct: 156 VGTCRASPQSPCHRHPSLRSGLEW 179
>gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 26.6 bits (57), Expect = 9.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 97 LGTCQAEPGQYCKEEVHIQGGIQW 120
+GTC+A P C ++ G++W
Sbjct: 156 VGTCRASPQSPCHRHPSLRSGLEW 179
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 26.6 bits (57), Expect = 9.9
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 18/74 (24%)
Query: 57 GTCQTKPGQYWKEEVHIQDVGGLIC--RACNLSLPFHG-CLLDLGTCQAEPGQYCKE-EV 112
G C +PG W GG C + C+ HG C LG C+ EPG + ++
Sbjct: 156 GVCACEPG--W---------GGPDCGLQECSAYCGSHGTCASPLGPCRCEPGFLGRACDL 204
Query: 113 HI---QGGIQWYSV 123
H+ QG W++V
Sbjct: 205 HLWENQGAGWWHNV 218
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.146 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,458,659
Number of Sequences: 37866
Number of extensions: 280552
Number of successful extensions: 846
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 39
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.