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Search of human proteins with 190194370
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190194370 LYR motif containing 1 [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190194370 LYR motif containing 1 [Homo sapiens] 249 5e-67
gi|190194368 LYR motif containing 1 [Homo sapiens] 249 5e-67
gi|10092683 LYR motif containing 1 [Homo sapiens] 249 5e-67
gi|10092689 LYR motif containing 2 [Homo sapiens] 35 0.018
gi|38570054 LYR motif containing 4 [Homo sapiens] 34 0.031
gi|115430227 LYR motif containing 5 [Homo sapiens] 30 0.34
gi|239740955 PREDICTED: similar to c114 SLIT-like testicular pro... 28 2.2
gi|239740953 PREDICTED: similar to c114 SLIT-like testicular pro... 28 2.2
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 28 2.2
gi|116325993 c114 SLIT-like testicular protein [Homo sapiens] 28 2.2
gi|110665701 leucine rich repeat containing 37A [Homo sapiens] 28 2.2
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s... 28 2.2
gi|58530840 desmoplakin isoform I [Homo sapiens] 27 2.9
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 27 2.9
gi|49574534 T cell immunoglobulin mucin 3 [Homo sapiens] 27 4.9
gi|4758648 kinesin family member 5B [Homo sapiens] 27 4.9
gi|171460914 dynamin 1-like isoform 1 [Homo sapiens] 27 4.9
gi|171460918 dynamin 1-like isoform 3 [Homo sapiens] 27 4.9
gi|171460916 dynamin 1-like isoform 2 [Homo sapiens] 27 4.9
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 26 6.5
gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo ... 26 6.5
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 26 6.5
gi|91208426 U5 snRNP-specific protein [Homo sapiens] 26 6.5
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 26 6.5
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 26 6.5
gi|4557329 fas ligand [Homo sapiens] 26 8.4
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens] 26 8.4
>gi|190194370 LYR motif containing 1 [Homo sapiens]
Length = 122
Score = 249 bits (635), Expect = 5e-67
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI
Sbjct: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
Query: 61 KQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYLRSHDE 120
KQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYLRSHDE
Sbjct: 61 KQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYLRSHDE 120
Query: 121 VS 122
VS
Sbjct: 121 VS 122
>gi|190194368 LYR motif containing 1 [Homo sapiens]
Length = 122
Score = 249 bits (635), Expect = 5e-67
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI
Sbjct: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
Query: 61 KQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYLRSHDE 120
KQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYLRSHDE
Sbjct: 61 KQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYLRSHDE 120
Query: 121 VS 122
VS
Sbjct: 121 VS 122
>gi|10092683 LYR motif containing 1 [Homo sapiens]
Length = 122
Score = 249 bits (635), Expect = 5e-67
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI
Sbjct: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
Query: 61 KQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYLRSHDE 120
KQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYLRSHDE
Sbjct: 61 KQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTPLRGRGLRSQEKLRKLSKPVYLRSHDE 120
Query: 121 VS 122
VS
Sbjct: 121 VS 122
>gi|10092689 LYR motif containing 2 [Homo sapiens]
Length = 88
Score = 34.7 bits (78), Expect = 0.018
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 6 RQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQCID 65
RQ+VL LYR I + R+ S +++Y+ + AR FR+NK+ T+ D I+ I
Sbjct: 19 RQQVLLLYRRILQTIRQVPNDS--------DRKYLKDWAREEFRRNKSATEEDTIRMMIT 70
Query: 66 E 66
+
Sbjct: 71 Q 71
>gi|38570054 LYR motif containing 4 [Homo sapiens]
Length = 91
Score = 33.9 bits (76), Expect = 0.031
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
M ++R +VL LYR++ R ++++ A + + Y + R FR+NKN+ D I
Sbjct: 1 MAASSRAQVLSLYRAMLRESKRFSAYN--------YRTYAVRRIRDAFRENKNVKDPVEI 52
Query: 61 KQCIDECTARIEIGL 75
+ +++ A+ ++G+
Sbjct: 53 QTLVNK--AKRDLGV 65
>gi|115430227 LYR motif containing 5 [Homo sapiens]
Length = 90
Score = 30.4 bits (67), Expect = 0.34
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 1 MTTATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
M + R EVL LY+++ L R D K Y + +F KNK++ + + I
Sbjct: 3 MANSLRGEVLKLYKNLLYLGR----------DYPKGADYFKKRLKNIFLKNKDVKNPEKI 52
Query: 61 KQCI 64
K+ I
Sbjct: 53 KELI 56
>gi|239740955 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 1 [Homo sapiens]
Length = 1635
Score = 27.7 bits (60), Expect = 2.2
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 2 TTATRQE-VLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
TTA R + V L+RS+ + + ++ + Y N+A T ++K T T++
Sbjct: 772 TTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNIC 831
Query: 61 KQCI--DECTARIEIGLHYK---IPYPRP 84
+ C DE + I++ + +P P P
Sbjct: 832 ELCTCGDEMLSCIDLNPEQRLRQVPVPEP 860
>gi|239740953 PREDICTED: similar to c114 SLIT-like testicular
protein isoform 2 [Homo sapiens]
Length = 1700
Score = 27.7 bits (60), Expect = 2.2
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 2 TTATRQE-VLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
TTA R + V L+RS+ + + ++ + Y N+A T ++K T T++
Sbjct: 772 TTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNIC 831
Query: 61 KQCI--DECTARIEIGLHYK---IPYPRP 84
+ C DE + I++ + +P P P
Sbjct: 832 ELCTCGDEMLSCIDLNPEQRLRQVPVPEP 860
>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
Length = 1946
Score = 27.7 bits (60), Expect = 2.2
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 4 ATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRK----NKNLTDTDL 59
A+++EV L + +L ++ + E +E + + E L + KNLT+ +
Sbjct: 1481 ASQKEVQALSTELLKLKNTYEESIVGQETLRRENKNLQEEISNLTNQVREGTKNLTEMEK 1540
Query: 60 IKQCIDECTARIEIGL 75
+K+ I+E +++ L
Sbjct: 1541 VKKLIEEEKTEVQVTL 1556
>gi|116325993 c114 SLIT-like testicular protein [Homo sapiens]
Length = 1700
Score = 27.7 bits (60), Expect = 2.2
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 2 TTATRQE-VLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
TTA R + V L+RS+ + + ++ + Y N+A T ++K T T++
Sbjct: 772 TTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNIC 831
Query: 61 KQCI--DECTARIEIGLHYK---IPYPRP 84
+ C DE + I++ + +P P P
Sbjct: 832 ELCTCGDEMLSCIDLNPEQRLRQVPVPEP 860
>gi|110665701 leucine rich repeat containing 37A [Homo sapiens]
Length = 1700
Score = 27.7 bits (60), Expect = 2.2
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 2 TTATRQE-VLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
TTA R + V L+RS+ + + ++ + Y N+A T ++K T T++
Sbjct: 772 TTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNIC 831
Query: 61 KQCI--DECTARIEIGLHYK---IPYPRP 84
+ C DE + I++ + +P P P
Sbjct: 832 ELCTCGDEMLSCIDLNPEQRLRQVPVPEP 860
>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
sapiens]
Length = 1634
Score = 27.7 bits (60), Expect = 2.2
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 2 TTATRQE-VLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
TTA R + V L+RS+ + + ++ + Y N+A T ++K T T++
Sbjct: 772 TTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNIC 831
Query: 61 KQCI--DECTARIEIGLHYK---IPYPRP 84
+ C DE + I++ + +P P P
Sbjct: 832 ELCTCGDEMLSCIDLNPEQRLRQVPVPEP 860
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 27.3 bits (59), Expect = 2.9
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 24 QATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQCIDECT 68
Q T + E++++ KQ + + A+T+ KNK + + +KQ ID+ T
Sbjct: 1453 QVTQMRTEESVRYKQSLDDAAKTIQDKNKEI---ERLKQLIDKET 1494
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 27.3 bits (59), Expect = 2.9
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 71 IEIGLHYKIPYPRPIHLPP--MGLTPLRGRGLRSQEKLR 107
+E+G + +P+P+P H PP MG+ R G R+ ++ R
Sbjct: 422 MEVGSYPNMPHPQPSHQPPGAMGIGQ-RNMGPRNMQQSR 459
>gi|49574534 T cell immunoglobulin mucin 3 [Homo sapiens]
Length = 301
Score = 26.6 bits (57), Expect = 4.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 86 HLPPMGLTPLRGRGLRSQEKLRKLSKPVY 114
+LPP GL G+RS+E + + + VY
Sbjct: 244 NLPPSGLANAVAEGIRSEENIYTIEENVY 272
>gi|4758648 kinesin family member 5B [Homo sapiens]
Length = 963
Score = 26.6 bits (57), Expect = 4.9
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 4 ATRQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQC 63
A+++EV + +++ LA + S ++ED KE + + +E L +K+ L D Q
Sbjct: 483 ASKEEVKEVLQALEELAVNYDQKSQEVEDKTKEYELLSDE---LNQKSATLASIDAELQK 539
Query: 64 IDECT 68
+ E T
Sbjct: 540 LKEMT 544
>gi|171460914 dynamin 1-like isoform 1 [Homo sapiens]
Length = 736
Score = 26.6 bits (57), Expect = 4.9
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 47 LFRKNKNLTDTDLIKQCIDECTARIEIGLHYKIPYPRPIHL 87
L KNK TD D I+Q I+ T R I + K P PIHL
Sbjct: 94 LHTKNKLYTDFDEIRQEIENETER--ISGNNKGVSPEPIHL 132
>gi|171460918 dynamin 1-like isoform 3 [Homo sapiens]
Length = 699
Score = 26.6 bits (57), Expect = 4.9
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 47 LFRKNKNLTDTDLIKQCIDECTARIEIGLHYKIPYPRPIHL 87
L KNK TD D I+Q I+ T R I + K P PIHL
Sbjct: 94 LHTKNKLYTDFDEIRQEIENETER--ISGNNKGVSPEPIHL 132
>gi|171460916 dynamin 1-like isoform 2 [Homo sapiens]
Length = 710
Score = 26.6 bits (57), Expect = 4.9
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 47 LFRKNKNLTDTDLIKQCIDECTARIEIGLHYKIPYPRPIHL 87
L KNK TD D I+Q I+ T R I + K P PIHL
Sbjct: 94 LHTKNKLYTDFDEIRQEIENETER--ISGNNKGVSPEPIHL 132
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 82 PRPIHLPPMGLTPLRGRGLRSQEKLRKL 109
P P+HLP T R R R++ +LR L
Sbjct: 167 PAPLHLPEREATEARPRRRRARRRLRVL 194
>gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo
sapiens]
Length = 870
Score = 26.2 bits (56), Expect = 6.5
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 2 TTATRQE-VLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLI 60
TTA + V L+RS+ + + ++ + Y N+A T + K T T++
Sbjct: 772 TTAPHPDRVQSLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEQKASTSTNIC 831
Query: 61 KQCI--DECTARIEIGLHYK---IPYPRP 84
+ C DE + I++ + +P P P
Sbjct: 832 ELCTCGDEMLSCIDLNPEQRLRQVPVPEP 860
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 82 PRPIHLPPMGLTPLRGRGLRSQEKLRKL 109
P P+HLP T R R R++ +LR L
Sbjct: 167 PAPLHLPEREATEARPRRRRARRRLRVL 194
>gi|91208426 U5 snRNP-specific protein [Homo sapiens]
Length = 2335
Score = 26.2 bits (56), Expect = 6.5
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 58 DLIKQCIDECTARIEIGLHYKIPYPRPIHLPPMGLTP--LRGRGLRS 102
DL+ +C ++ RI+IGL+ K+P P P + TP L G G+ S
Sbjct: 1286 DLLVKCENKIQTRIKIGLNSKMPSRFP---PVVFYTPKELGGLGMLS 1329
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
1 [Homo sapiens]
Length = 1722
Score = 26.2 bits (56), Expect = 6.5
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 6 RQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQCID 65
+QE + +++ + W+ Q E+ I+ + E RT F+ + L+KQ
Sbjct: 226 KQEQDKMNDELYKEEKIWKEKFKQHEEYIRNLHLQMEEERTRFKDQQEKEKNSLLKQ--- 282
Query: 66 ECTARIEIGLHYK 78
+ A ++I YK
Sbjct: 283 QNNAAVKIQAKYK 295
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
2 [Homo sapiens]
Length = 1336
Score = 26.2 bits (56), Expect = 6.5
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 6 RQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQCID 65
+QE + +++ + W+ Q E+ I+ + E RT F+ + L+KQ
Sbjct: 226 KQEQDKMNDELYKEEKIWKEKFKQHEEYIRNLHLQMEEERTRFKDQQEKEKNSLLKQ--- 282
Query: 66 ECTARIEIGLHYK 78
+ A ++I YK
Sbjct: 283 QNNAAVKIQAKYK 295
>gi|4557329 fas ligand [Homo sapiens]
Length = 281
Score = 25.8 bits (55), Expect = 8.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 80 PYPRPIHLPPMGLTPLRGRGLRS 102
P P P LPP+ L PL+ RG S
Sbjct: 56 PPPPPPPLPPLPLPPLKKRGNHS 78
>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
Length = 4116
Score = 25.8 bits (55), Expect = 8.4
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 15 SIFRLARKWQATSGQME------DTIKEKQYILNEARTLFRKNKNLTDTDLIKQCIDECT 68
++F+L R+ + S ++E D + + I + +R L ++ + DLIK+C E
Sbjct: 736 TVFKLRRQLRDASERLEFLMDYADLPYQIEDIFDNSRNLLLHKRDQAEMDLIKRC-SEFE 794
Query: 69 ARIEIGLHYKI 79
R+E G H ++
Sbjct: 795 LRLE-GYHREL 804
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,637,808
Number of Sequences: 37866
Number of extensions: 201836
Number of successful extensions: 767
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 30
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.