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Search of human proteins with 188528667
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188528667 histone H3-like [Homo sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188528667 histone H3-like [Homo sapiens] 264 2e-71
gi|4885385 H3 histone, family 3B [Homo sapiens] 248 8e-67
gi|4504279 H3 histone, family 3A [Homo sapiens] 248 8e-67
gi|53793688 histone cluster 2, H3a [Homo sapiens] 243 3e-65
gi|31742503 histone cluster 2, H3c [Homo sapiens] 243 3e-65
gi|183076548 histone cluster 2, H3d [Homo sapiens] 243 3e-65
gi|4504287 histone cluster 1, H3e [Homo sapiens] 241 1e-64
gi|4504295 histone cluster 1, H3h [Homo sapiens] 241 1e-64
gi|4504289 histone cluster 1, H3i [Homo sapiens] 241 1e-64
gi|4504281 histone cluster 1, H3a [Homo sapiens] 241 1e-64
gi|10440560 histone cluster 1, H3f [Homo sapiens] 241 1e-64
gi|21071021 histone cluster 1, H3d [Homo sapiens] 241 1e-64
gi|4504297 histone cluster 1, H3b [Homo sapiens] 241 1e-64
gi|4504293 histone cluster 1, H3j [Homo sapiens] 241 1e-64
gi|4504285 histone cluster 1, H3c [Homo sapiens] 241 1e-64
gi|4504291 H3 histone family, member H [Homo sapiens] 241 1e-64
gi|4504299 histone cluster 3, H3 [Homo sapiens] 236 5e-63
gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens] 208 1e-54
gi|169167761 PREDICTED: similar to HIStone family member (his-72... 204 1e-53
gi|88987392 PREDICTED: similar to HIStone family member (his-72)... 204 1e-53
gi|41147170 PREDICTED: similar to HIStone family member (his-72)... 204 1e-53
gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens] 197 2e-51
gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens] 152 8e-38
gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens] 152 8e-38
gi|4502775 centromere protein A isoform a [Homo sapiens] 102 7e-23
gi|109637779 centromere protein A isoform b [Homo sapiens] 76 9e-15
gi|126722969 centromere protein T [Homo sapiens] 32 0.12
gi|62865614 TAF9 RNA polymerase II, TATA box binding protein-ass... 32 0.16
gi|4507351 TAF9 RNA polymerase II, TATA box binding protein-asso... 32 0.16
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 30 0.59
>gi|188528667 histone H3-like [Homo sapiens]
Length = 135
Score = 264 bits (674), Expect = 2e-71
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTEL 60
MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTEL 60
Query: 61 LIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIM 120
LIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIM 120
Query: 121 PKDIQLARRIRGERA 135
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>gi|4885385 H3 histone, family 3B [Homo sapiens]
Length = 136
Score = 248 bits (634), Expect = 8e-67
Identities = 130/136 (95%), Positives = 131/136 (96%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS PST GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQSAA+GALQEASEAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504279 H3 histone, family 3A [Homo sapiens]
Length = 136
Score = 248 bits (634), Expect = 8e-67
Identities = 130/136 (95%), Positives = 131/136 (96%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS PST GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQSAA+GALQEASEAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|53793688 histone cluster 2, H3a [Homo sapiens]
Length = 136
Score = 243 bits (620), Expect = 3e-65
Identities = 128/136 (94%), Positives = 130/136 (95%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEASEAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|31742503 histone cluster 2, H3c [Homo sapiens]
Length = 136
Score = 243 bits (620), Expect = 3e-65
Identities = 128/136 (94%), Positives = 130/136 (95%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEASEAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|183076548 histone cluster 2, H3d [Homo sapiens]
Length = 136
Score = 243 bits (620), Expect = 3e-65
Identities = 128/136 (94%), Positives = 130/136 (95%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEASEAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504287 histone cluster 1, H3e [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504295 histone cluster 1, H3h [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504289 histone cluster 1, H3i [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504281 histone cluster 1, H3a [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|10440560 histone cluster 1, H3f [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|21071021 histone cluster 1, H3d [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504297 histone cluster 1, H3b [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504293 histone cluster 1, H3j [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504285 histone cluster 1, H3c [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504291 H3 histone family, member H [Homo sapiens]
Length = 136
Score = 241 bits (615), Expect = 1e-64
Identities = 127/136 (93%), Positives = 129/136 (94%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATKAARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRLVREIAQDF TDLRFQS+AV ALQEA EAYLVGL EDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|4504299 histone cluster 3, H3 [Homo sapiens]
Length = 136
Score = 236 bits (601), Expect = 5e-63
Identities = 123/136 (90%), Positives = 127/136 (93%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARKSTGGKAPRKQLATK ARKS P+T GVK PHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LLIRKLPFQRL+REIAQDF TDLRFQS+AV ALQEA E+YLVGL EDTNLC IHAKRVTI
Sbjct: 61 LLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]
Length = 147
Score = 208 bits (529), Expect = 1e-54
Identities = 107/136 (78%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARK+T +APRK LATKAARK T G+K PHRY+PGT+ALREIR+YQKST+
Sbjct: 1 MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LL+RKLPFQRLVREIAQ + DLRFQSAA+GALQEASEAYLV L EDTNLCAIHA+RVTI
Sbjct: 61 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
Query: 120 MPKDIQLARRIRGERA 135
MP+D+QLARR+RGE A
Sbjct: 121 MPRDMQLARRLRGEGA 136
>gi|169167761 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 204 bits (520), Expect = 1e-53
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 1/134 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARK+T +APRK LATKAA K P T G+K PHRY+PGT+ALREIR+YQKST+
Sbjct: 1 MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LL+RKLPFQRLVREIAQ + DLRFQSAA+GALQEASEAYLV L EDTNLCAIHA+RVTI
Sbjct: 61 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
Query: 120 MPKDIQLARRIRGE 133
MP+D+QLARR+R E
Sbjct: 121 MPRDMQLARRLRRE 134
>gi|88987392 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 204 bits (520), Expect = 1e-53
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 1/134 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARK+T +APRK LATKAA K P T G+K PHRY+PGT+ALREIR+YQKST+
Sbjct: 1 MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LL+RKLPFQRLVREIAQ + DLRFQSAA+GALQEASEAYLV L EDTNLCAIHA+RVTI
Sbjct: 61 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
Query: 120 MPKDIQLARRIRGE 133
MP+D+QLARR+R E
Sbjct: 121 MPRDMQLARRLRRE 134
>gi|41147170 PREDICTED: similar to HIStone family member (his-72)
[Homo sapiens]
Length = 136
Score = 204 bits (520), Expect = 1e-53
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 1/134 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARK+T +APRK LATKAA K P T G+K PHRY+PGT+ALREIR+YQKST+
Sbjct: 1 MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119
LL+RKLPFQRLVREIAQ + DLRFQSAA+GALQEASEAYLV L EDTNLCAIHA+RVTI
Sbjct: 61 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
Query: 120 MPKDIQLARRIRGE 133
MP+D+QLARR+R E
Sbjct: 121 MPRDMQLARRLRRE 134
>gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens]
Length = 141
Score = 197 bits (502), Expect = 2e-51
Identities = 103/122 (84%), Positives = 111/122 (90%), Gaps = 1/122 (0%)
Query: 15 KAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRE 73
KA RKQL TKAA KS PST GVK PH YRPGTVALREIRRYQK+TELLIRKL FQRLV+E
Sbjct: 20 KAARKQLGTKAAHKSAPSTGGVKKPHHYRPGTVALREIRRYQKATELLIRKLRFQRLVQE 79
Query: 74 IAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGE 133
IAQD TDLRFQSAA+GALQEASEAYLVGL ED+NLCAIHAKR+TIMPK+IQLARRI+G+
Sbjct: 80 IAQDLKTDLRFQSAAIGALQEASEAYLVGLFEDSNLCAIHAKRLTIMPKEIQLARRIQGK 139
Query: 134 RA 135
RA
Sbjct: 140 RA 141
>gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens]
Length = 193
Score = 152 bits (384), Expect = 8e-38
Identities = 79/101 (78%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARK+T +APRK LATKAARK T G+K PHRY+PGT+ALREIR+YQKST+
Sbjct: 46 MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 105
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYL 100
LL+RKLPFQRLVREIAQ + DLRFQSAA+GALQEASEAYL
Sbjct: 106 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 146
>gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens]
Length = 193
Score = 152 bits (384), Expect = 8e-38
Identities = 79/101 (78%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59
MARTKQTARK+T +APRK LATKAARK T G+K PHRY+PGT+ALREIR+YQKST+
Sbjct: 46 MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 105
Query: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYL 100
LL+RKLPFQRLVREIAQ + DLRFQSAA+GALQEASEAYL
Sbjct: 106 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 146
>gi|4502775 centromere protein A isoform a [Homo sapiens]
Length = 140
Score = 102 bits (255), Expect = 7e-23
Identities = 65/131 (49%), Positives = 82/131 (62%), Gaps = 8/131 (6%)
Query: 9 RKSTGGKAPRKQ----LATKAARKSTPSTCGVKPHRY-RPGTVALREIRRYQKSTELLIR 63
R+S +APR++ T + PS G H++ R L+EIR+ QKST LLIR
Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSL-GASSHQHSRRRQGWLKEIRKLQKSTHLLIR 63
Query: 64 KLPFQRLVREIAQDFN--TDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMP 121
KLPF RL REI F D +Q+ A+ ALQEA+EA+LV L ED L +HA RVT+ P
Sbjct: 64 KLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFP 123
Query: 122 KDIQLARRIRG 132
KD+QLARRIRG
Sbjct: 124 KDVQLARRIRG 134
>gi|109637779 centromere protein A isoform b [Homo sapiens]
Length = 114
Score = 75.9 bits (185), Expect = 9e-15
Identities = 54/129 (41%), Positives = 68/129 (52%), Gaps = 30/129 (23%)
Query: 9 RKSTGGKAPRKQ----LATKAARKSTPSTCGVKPHRY-RPGTVALREIRRYQKSTELLIR 63
R+S +APR++ T + PS G H++ R L+EIR+ QKST LLIR
Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSL-GASSHQHSRRRQGWLKEIRKLQKSTHLLIR 63
Query: 64 KLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKD 123
KLPF RL A+EA+LV L ED L +HA RVT+ PKD
Sbjct: 64 KLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPKD 99
Query: 124 IQLARRIRG 132
+QLARRIRG
Sbjct: 100 VQLARRIRG 108
>gi|126722969 centromere protein T [Homo sapiens]
Length = 561
Score = 32.3 bits (72), Expect = 0.12
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 78 FNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRG 132
F + + A+ +++ + Y L +D + A HA R T+ P+D++L R +G
Sbjct: 469 FYAKMPMERKALEMVEKCLDKYFQHLCDDLEVFAAHAGRKTVKPEDLELLMRRQG 523
>gi|62865614 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform a [Homo sapiens]
Length = 264
Score = 32.0 bits (71), Expect = 0.16
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 69 RLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLAR 128
+++ +I +D ++ + + E + Y+ +L+D + + HAK+ T+ D++LA
Sbjct: 17 QMMAQILKDMGIT-EYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAI 75
Query: 129 RIRGERA 135
+ R +++
Sbjct: 76 QCRADQS 82
>gi|4507351 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform a [Homo sapiens]
Length = 264
Score = 32.0 bits (71), Expect = 0.16
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 69 RLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLAR 128
+++ +I +D ++ + + E + Y+ +L+D + + HAK+ T+ D++LA
Sbjct: 17 QMMAQILKDMGIT-EYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRLAI 75
Query: 129 RIRGERA 135
+ R +++
Sbjct: 76 QCRADQS 82
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 30.0 bits (66), Expect = 0.59
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 49 REIRRYQKSTELLIRKLPFQRLVREIAQDFNT 80
+++ R Q ++++L+R +PFQ REI + F+T
Sbjct: 823 KQVPRKQTTSKILVRNIPFQAHSREIRELFST 854
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,507,401
Number of Sequences: 37866
Number of extensions: 163109
Number of successful extensions: 555
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 52
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.