Guide to the Human Genome
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Name: LOC340096 Sequence: fasta or formatted (193aa) NCBI GI: 169167750
Description:

PREDICTED: similar to hCG1642908

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt mRNA [193aa] PREDICTED: similar to hCG1642908
alt prot [147aa] PREDICTED: similar to hCG1642908
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         28           2
 C cysteine            1.6          3           1
 D aspartate           2.1          4           1
 E glutamate           4.7          9           2
 F phenylalanine       2.1          4           1
 G glycine             5.2         10           2
 H histidine           3.1          6           2
 I isoleucine          3.1          6           1
 K lysine              7.3         14           2
 L leucine             8.8         17           3
 M methionine          3.6          7           1
 N asparagine          1.6          3           1
 P proline             6.7         13           1
 Q glutamine           6.2         12           1
 R arginine            8.3         16           1
 S serine              4.1          8           1
 T threonine           6.2         12           1
 V valine              6.7         13           2
 W tryptophan          2.6          5           2
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1642908 
LOC340096             1.000   PREDICTED: similar to hCG1642908 
LOC340096             0.469   PREDICTED: similar to hCG1642908 
LOC391769             0.458   PREDICTED: similar to HIStone family member (his-72...
LOC391769             0.458   PREDICTED: similar to HIStone family member (his-72)...
LOC391769             0.458   PREDICTED: similar to HIStone family member (his-72)...
H3F3B                 0.379   H3 histone, family 3B 
H3F3A                 0.379   H3 histone, family 3A 
HIST2H3A              0.365   histone cluster 2, H3a 
HIST2H3C              0.365   histone cluster 2, H3c 
HIST2H3D              0.365   histone cluster 2, H3d 
HIST1H3E              0.360   histone cluster 1, H3e 
HIST1H3H              0.360   histone cluster 1, H3h 
HIST1H3I              0.360   histone cluster 1, H3i 
HIST1H3A              0.360   histone cluster 1, H3a 
HIST1H3F              0.360   histone cluster 1, H3f 
HIST1H3D              0.360   histone cluster 1, H3d 
HIST1H3B              0.360   histone cluster 1, H3b 
HIST1H3J              0.360   histone cluster 1, H3j 
HIST1H3C              0.360   histone cluster 1, H3c 
HIST1H3G              0.360   H3 histone family, member H 
HIST3H3               0.349   histone cluster 3, H3 
LOC440093             0.346   histone H3-like 
LOC644950             0.286   PREDICTED: similar to histone H3.3B 
CENPA                 0.101   centromere protein A isoform a 
CENPA                 0.054   centromere protein A isoform b 
LOC285697             0.025   PREDICTED: similar to hCG1807616 
LOC285697             0.025   PREDICTED: similar to hCG1807616 
LOC285697             0.025   PREDICTED: hypothetical protein LOC285697 
LOC391767             0.022   PREDICTED: similar to TBP-associated factor 11 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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