LOC440093 10226

Name: LOC440093	Sequence: fasta or formatted (135aa)		NCBI GI: 188528667
Description: histone H3-like		Referenced in: Histones, Related Proteins, and Modifying Enzymes
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.6 17 2 C cysteine 1.5 2 1 D aspartate 3.0 4 1 E glutamate 5.2 7 1 F phenylalanine 2.2 3 1 G glycine 5.2 7 2 H histidine 1.5 2 1 I isoleucine 5.2 7 1 K lysine 8.1 11 1 L leucine 9.6 13 2 M methionine 1.5 2 1 N asparagine 1.5 2 1 P proline 4.4 6 1 Q glutamine 5.9 8 1 R arginine 13.3 18 2 S serine 4.4 6 1 T threonine 8.1 11 1 V valine 4.4 6 1 W tryptophan 0.0 0 0 Y tyrosine 2.2 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 histone H3-like H3F3B 0.933 H3 histone, family 3B H3F3A 0.933 H3 histone, family 3A HIST2H3A 0.912 histone cluster 2, H3a HIST2H3C 0.912 histone cluster 2, H3c HIST2H3D 0.912 histone cluster 2, H3d HIST1H3E 0.904 histone cluster 1, H3e HIST1H3H 0.904 histone cluster 1, H3h HIST1H3I 0.904 histone cluster 1, H3i HIST1H3A 0.904 histone cluster 1, H3a HIST1H3F 0.904 histone cluster 1, H3f HIST1H3D 0.904 histone cluster 1, H3d HIST1H3B 0.904 histone cluster 1, H3b HIST1H3J 0.904 histone cluster 1, H3j HIST1H3C 0.904 histone cluster 1, H3c HIST1H3G 0.904 H3 histone family, member H HIST3H3 0.883 histone cluster 3, H3 LOC340096 0.766 PREDICTED: similar to hCG1642908 LOC391769 0.749 PREDICTED: similar to HIStone family member (his-72... LOC391769 0.749 PREDICTED: similar to HIStone family member (his-72)... LOC391769 0.749 PREDICTED: similar to HIStone family member (his-72)... LOC644950 0.720 PREDICTED: similar to histone H3.3B LOC340096 0.531 PREDICTED: similar to hCG1642908 LOC340096 0.531 PREDICTED: similar to hCG1642908 CENPA 0.322 centromere protein A isoform a CENPA 0.213 centromere protein A isoform b CENPT 0.029 centromere protein T TAF9 0.029 TAF9 RNA polymerase II, TATA box binding protein-ass... TAF9 0.029 TAF9 RNA polymerase II, TATA box binding protein-asso... RBM19 0.021 RNA binding motif protein 19 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.