Guide to the Human Genome
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Name: HIST1H3B Sequence: fasta or formatted (136aa) NCBI GI: 4504297
Description:

histone cluster 1, H3b

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         18           2
 C cysteine            1.5          2           1
 D aspartate           2.9          4           1
 E glutamate           5.1          7           1
 F phenylalanine       2.9          4           1
 G glycine             5.1          7           2
 H histidine           1.5          2           1
 I isoleucine          5.1          7           1
 K lysine              9.6         13           2
 L leucine             8.8         12           2
 M methionine          2.2          3           1
 N asparagine          0.7          1           1
 P proline             4.4          6           1
 Q glutamine           5.9          8           1
 R arginine           13.2         18           2
 S serine              3.7          5           2
 T threonine           7.4         10           1
 V valine              4.4          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histone cluster 1, H3b 
HIST1H3E              1.000   histone cluster 1, H3e 
HIST1H3H              1.000   histone cluster 1, H3h 
HIST1H3I              1.000   histone cluster 1, H3i 
HIST1H3A              1.000   histone cluster 1, H3a 
HIST1H3F              1.000   histone cluster 1, H3f 
HIST1H3D              1.000   histone cluster 1, H3d 
HIST1H3J              1.000   histone cluster 1, H3j 
HIST1H3C              1.000   histone cluster 1, H3c 
HIST1H3G              1.000   H3 histone family, member H 
HIST2H3A              0.983   histone cluster 2, H3a 
HIST2H3C              0.983   histone cluster 2, H3c 
HIST2H3D              0.983   histone cluster 2, H3d 
HIST3H3               0.979   histone cluster 3, H3 
H3F3B                 0.959   H3 histone, family 3B 
H3F3A                 0.959   H3 histone, family 3A 
LOC440093             0.896   histone H3-like 
LOC340096             0.788   PREDICTED: similar to hCG1642908 
LOC391769             0.772   PREDICTED: similar to HIStone family member (his-72...
LOC391769             0.772   PREDICTED: similar to HIStone family member (his-72)...
LOC391769             0.772   PREDICTED: similar to HIStone family member (his-72)...
LOC644950             0.751   PREDICTED: similar to histone H3.3B 
LOC340096             0.548   PREDICTED: similar to hCG1642908 
LOC340096             0.548   PREDICTED: similar to hCG1642908 
CENPA                 0.353   centromere protein A isoform a 
CENPA                 0.232   centromere protein A isoform b 
H2BFM                 0.033   PREDICTED: H2B histone family, member M 
H2BFM                 0.033   PREDICTED: H2B histone family, member M 
CENPT                 0.033   centromere protein T 
H2BFM                 0.025   PREDICTED: H2B histone family, member M 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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