Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HIST3H3 Sequence: fasta or formatted (136aa) NCBI GI: 4504299
Description:

histone cluster 3, H3

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         15           1
 C cysteine            1.5          2           1
 D aspartate           2.9          4           1
 E glutamate           5.1          7           1
 F phenylalanine       2.9          4           1
 G glycine             5.1          7           2
 H histidine           1.5          2           1
 I isoleucine          5.1          7           1
 K lysine              9.6         13           2
 L leucine             8.8         12           2
 M methionine          2.9          4           1
 N asparagine          0.7          1           1
 P proline             4.4          6           1
 Q glutamine           5.9          8           1
 R arginine           13.2         18           2
 S serine              4.4          6           2
 T threonine           7.4         10           1
 V valine              5.1          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histone cluster 3, H3 
HIST1H3E              0.979   histone cluster 1, H3e 
HIST1H3H              0.979   histone cluster 1, H3h 
HIST1H3I              0.979   histone cluster 1, H3i 
HIST1H3A              0.979   histone cluster 1, H3a 
HIST1H3F              0.979   histone cluster 1, H3f 
HIST1H3D              0.979   histone cluster 1, H3d 
HIST1H3B              0.979   histone cluster 1, H3b 
HIST1H3J              0.979   histone cluster 1, H3j 
HIST1H3C              0.979   histone cluster 1, H3c 
HIST1H3G              0.979   H3 histone family, member H 
HIST2H3A              0.963   histone cluster 2, H3a 
HIST2H3C              0.963   histone cluster 2, H3c 
HIST2H3D              0.963   histone cluster 2, H3d 
H3F3B                 0.938   H3 histone, family 3B 
H3F3A                 0.938   H3 histone, family 3A 
LOC440093             0.876   histone H3-like 
LOC340096             0.763   PREDICTED: similar to hCG1642908 
LOC391769             0.751   PREDICTED: similar to HIStone family member (his-72...
LOC391769             0.751   PREDICTED: similar to HIStone family member (his-72)...
LOC391769             0.751   PREDICTED: similar to HIStone family member (his-72)...
LOC644950             0.726   PREDICTED: similar to histone H3.3B 
LOC340096             0.531   PREDICTED: similar to hCG1642908 
LOC340096             0.531   PREDICTED: similar to hCG1642908 
CENPA                 0.340   centromere protein A isoform a 
CENPA                 0.224   centromere protein A isoform b 
CENPT                 0.029   centromere protein T 
H2BFM                 0.025   PREDICTED: H2B histone family, member M 
H2BFM                 0.025   PREDICTED: H2B histone family, member M 
ZFP37                 0.025   zinc finger protein 37 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press