Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC44A2 Sequence: fasta or formatted (704aa) NCBI GI: 222831610
Description:

solute carrier family 44, member 2 isoform 2

Referenced in:

Acetylcholine
Solute Carrier Families

Other entries for this name:
alt prot [706aa] solute carrier family 44, member 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         59           2
 C cysteine            3.8         27           2
 D aspartate           3.7         26           2
 E glutamate           4.0         28           1
 F phenylalanine       7.7         54           4
 G glycine             6.2         44           2
 H histidine           1.3          9           1
 I isoleucine          8.0         56           3
 K lysine              5.0         35           2
 L leucine            12.1         85           3
 M methionine          2.4         17           1
 N asparagine          3.8         27           2
 P proline             4.0         28           2
 Q glutamine           2.3         16           1
 R arginine            5.1         36           2
 S serine              4.7         33           2
 T threonine           4.5         32           2
 V valine              6.5         46           1
 W tryptophan          1.4         10           1
 Y tyrosine            5.1         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 44, member 2 isoform 2 
SLC44A2               0.989   solute carrier family 44, member 2 isoform 1 
SLC44A5               0.591   solute carrier family 44, member 5 isoform B 
SLC44A5               0.589   solute carrier family 44, member 5 isoform A 
SLC44A4               0.500   choline transporter-like protein 4 
SLC44A1               0.179   CDW92 antigen 
SLC44A3               0.145   solute carrier family 44, member 3 isoform 1 
SLC44A3               0.140   solute carrier family 44, member 3 isoform 2 
LOC388849             0.004   PREDICTED: similar to hCG1732289 
ABCA5                 0.004   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.004   ATP-binding cassette, sub-family A , member 5 
SLC22A25              0.004   putative UST1-like organic anion transporter 
GOLT1A                0.004   golgi transport 1 homolog A 
OR4A47                0.004   olfactory receptor, family 4, subfamily A, member 4...
FER1L5                0.004   fer-1-like 5 isoform 2 
SLC22A9               0.004   solute carrier family 22 (organic anion/cation trans...
CDS1                  0.004   CDP-diacylglycerol synthase 1 
TM7SF4                0.004   dendritic cell-specific transmembrane protein 
RHBDF2                0.004   rhomboid, veinlet-like 6 isoform 2 
RHBDF2                0.004   rhomboid, veinlet-like 6 isoform 1 
TMC6                  0.004   transmembrane channel-like 6 
TMC6                  0.004   transmembrane channel-like 6 
SEMA4C                0.004   semaphorin 4C 
SLC2A9                0.004   solute carrier family 2, member 9 protein isoform 2 ...
SLC2A9                0.004   solute carrier family 2, member 9 protein isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press