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Search of human proteins with 185136049
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|185136049 FSHD region gene 2 family, member C [Homo sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|185136049 FSHD region gene 2 family, member C [Homo sapiens] 577 e-165
gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens] 557 e-159
gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens] 557 e-159
gi|124487405 FSHD region gene 2 family, member B [Homo sapiens] 533 e-152
gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo ... 530 e-151
gi|52353320 FSHD region gene 2 [Homo sapiens] 530 e-151
gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo ... 288 5e-78
gi|239753769 PREDICTED: similar to FSHD region gene 2 family, me... 127 1e-29
gi|239748331 PREDICTED: similar to FSHD region gene 2 family, me... 127 1e-29
gi|239742234 PREDICTED: similar to FSHD region gene 2 family, me... 127 1e-29
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 41 0.001
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 39 0.004
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 39 0.004
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 36 0.033
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 36 0.043
gi|148727255 microtubule associated serine/threonine kinase fami... 35 0.057
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 35 0.074
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 34 0.16
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens] 34 0.16
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 34 0.16
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 34 0.16
gi|120587019 zinc finger protein 318 [Homo sapiens] 34 0.16
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 33 0.22
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 33 0.28
gi|111607441 hypothetical protein LOC400506 [Homo sapiens] 33 0.28
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 33 0.28
gi|50083281 KIAA1853 protein [Homo sapiens] 33 0.28
gi|153792012 DNA polymerase zeta [Homo sapiens] 33 0.37
gi|41152097 DNA segment on chromosome X and Y (unique) 155 expre... 33 0.37
gi|13128860 histone deacetylase 1 [Homo sapiens] 32 0.48
>gi|185136049 FSHD region gene 2 family, member C [Homo sapiens]
Length = 282
Score = 577 bits (1486), Expect = e-165
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN
Sbjct: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
Query: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV
Sbjct: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
Query: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
Query: 241 WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKLGAP 282
WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKLGAP
Sbjct: 241 WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKLGAP 282
>gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 557 bits (1435), Expect = e-159
Identities = 272/282 (96%), Positives = 278/282 (98%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
GS+PNPNKENSEETKLKAGNSTAGSEPESSSY+ENCRKRKISSKD CQDRAGNCPEEEC+
Sbjct: 61 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKISSKDSCQDRAGNCPEEECS 120
Query: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
LTLNKKSRSSTAVHNSEIQETCDAHHRG SRACTG SK+HRS+AL VQTPSLRKSLVTSV
Sbjct: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGRSRACTGCSKQHRSQALGVQTPSLRKSLVTSV 180
Query: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
Query: 241 WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKLGAP 282
WLVPATLPGPG+SALDREAHPFPGQEITEPVSGSDEAKLGAP
Sbjct: 241 WLVPATLPGPGESALDREAHPFPGQEITEPVSGSDEAKLGAP 282
>gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 557 bits (1435), Expect = e-159
Identities = 272/282 (96%), Positives = 278/282 (98%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
Query: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
GS+PNPNKENSEETKLKAGNSTAGSEPESSSY+ENCRKRKISSKD CQDRAGNCPEEEC+
Sbjct: 61 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKISSKDSCQDRAGNCPEEECS 120
Query: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
LTLNKKSRSSTAVHNSEIQETCDAHHRG SRACTG SK+HRS+AL VQTPSLRKSLVTSV
Sbjct: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGRSRACTGCSKQHRSQALGVQTPSLRKSLVTSV 180
Query: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
Query: 241 WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKLGAP 282
WLVPATLPGPG+SALDREAHPFPGQEITEPVSGSDEAKLGAP
Sbjct: 241 WLVPATLPGPGESALDREAHPFPGQEITEPVSGSDEAKLGAP 282
>gi|124487405 FSHD region gene 2 family, member B [Homo sapiens]
Length = 278
Score = 533 bits (1372), Expect = e-152
Identities = 262/279 (93%), Positives = 270/279 (96%), Gaps = 1/279 (0%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
Query: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
GS+PNPNKENSEETKLKAGNSTAGSEPESSSY+ENCRKRK+SSKD CQD AGNCPE+EC+
Sbjct: 60 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECS 119
Query: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
L+LNKKSRSST VHNSEIQETCDAHHRG SRACTGRSKRHRSRAL VQTPS+RKSLVTSV
Sbjct: 120 LSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSKRHRSRALGVQTPSIRKSLVTSV 179
Query: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 180 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 239
Query: 241 WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKL 279
WLVPATLPGPG+SALDREAHPFPGQEITE VSGSDEAKL
Sbjct: 240 WLVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
>gi|239747159 PREDICTED: hypothetical protein XP_002343930 [Homo
sapiens]
Length = 278
Score = 530 bits (1364), Expect = e-151
Identities = 261/279 (93%), Positives = 269/279 (96%), Gaps = 1/279 (0%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNED DLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
Query: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
GS+PNPNKENSEETKLKAGNSTAGSEPESSSY+ENCRKRK+SSKD CQD AGNCPE+EC+
Sbjct: 60 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECS 119
Query: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
L+LNKKSRSSTAVHNSEIQETCDAHHRG SRACTG SKRHRSRAL VQTPS+RKSLVTSV
Sbjct: 120 LSLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSV 179
Query: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 180 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 239
Query: 241 WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKL 279
WLVPATLPGPG+SALDREAHPFPGQEITE VSGSDEAKL
Sbjct: 240 WLVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
>gi|52353320 FSHD region gene 2 [Homo sapiens]
Length = 278
Score = 530 bits (1364), Expect = e-151
Identities = 261/279 (93%), Positives = 269/279 (96%), Gaps = 1/279 (0%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNED DLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFK KGKTAFSHSSEKH QRQ
Sbjct: 1 MGKGNEDSDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKEKGKTAFSHSSEKHIQRQ- 59
Query: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
GS+PNPNKENSEETKLKAGNSTAGSEPESSSY+ENCRKRK+SSKD CQD AGNCPE+EC+
Sbjct: 60 GSEPNPNKENSEETKLKAGNSTAGSEPESSSYRENCRKRKMSSKDSCQDTAGNCPEKECS 119
Query: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
L+LNKKSRSSTAVHNSEIQETCDAHHRG SRACTG SKRHRSRAL VQTPS+RKSLVTSV
Sbjct: 120 LSLNKKSRSSTAVHNSEIQETCDAHHRGHSRACTGHSKRHRSRALGVQTPSIRKSLVTSV 179
Query: 181 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 240
RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES
Sbjct: 180 RAMSEAVYQDLAQVWAQQIHSPLTCEQLTLLTRLRGPLCAQVQTLYSMATQAAYVFPAES 239
Query: 241 WLVPATLPGPGDSALDREAHPFPGQEITEPVSGSDEAKL 279
WLVPATLPGPG+SALDREAHPFPGQEITE VSGSDEAKL
Sbjct: 240 WLVPATLPGPGESALDREAHPFPGQEITETVSGSDEAKL 278
>gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo
sapiens]
Length = 381
Score = 288 bits (736), Expect = 5e-78
Identities = 151/204 (74%), Positives = 151/204 (74%), Gaps = 52/204 (25%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQ
Sbjct: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQ--- 57
Query: 61 GSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECN 120
R GNCPEEECN
Sbjct: 58 -------------------------------------------------RQGNCPEEECN 68
Query: 121 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 180
LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV
Sbjct: 69 LTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSKRHRSRALEVQTPSLRKSLVTSV 128
Query: 181 RAMSEAVYQDLAQVWAQQIHSPLT 204
RAMSEAVYQDLAQVWAQQIHSPLT
Sbjct: 129 RAMSEAVYQDLAQVWAQQIHSPLT 152
>gi|239753769 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 127 bits (318), Expect = 1e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFKGKGKTA SHSSEKH QRQ
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 61 GSDPNP 66
G +PNP
Sbjct: 61 GLEPNP 66
>gi|239748331 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 127 bits (318), Expect = 1e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFKGKGKTA SHSSEKH QRQ
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 61 GSDPNP 66
G +PNP
Sbjct: 61 GLEPNP 66
>gi|239742234 PREDICTED: similar to FSHD region gene 2 family,
member C [Homo sapiens]
Length = 88
Score = 127 bits (318), Expect = 1e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Query: 1 MGKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQA 60
MGKGNEDP LHCSSIQCSTDQPPFQQISFT KGSDEKKPFKGKGKTA SHSSEKH QRQ
Sbjct: 1 MGKGNEDPYLHCSSIQCSTDQPPFQQISFTGKGSDEKKPFKGKGKTASSHSSEKHIQRQV 60
Query: 61 GSDPNP 66
G +PNP
Sbjct: 61 GLEPNP 66
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 41.2 bits (95), Expect = 0.001
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 9/142 (6%)
Query: 34 SDEKKPFKGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEET-----KLKAGNSTAGSEPE 88
S E + + K K++ H SE+H ++ SD + NS E K K S+ G
Sbjct: 67 SKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHS 126
Query: 89 SSSYQENCRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDA---- 144
S +E + + + + R+ + KKSRS + I+ +
Sbjct: 127 RSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRH 186
Query: 145 HHRGSSRACTGRSKRHRSRALE 166
HR SR+ T R R + +E
Sbjct: 187 RHRTRSRSRTRSRSRDRKKRIE 208
Score = 34.3 bits (77), Expect = 0.13
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 25 QQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLKAGNSTAG 84
++++ +E G D K + K SHS + +R+ S K++ ++ + + +
Sbjct: 100 ERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRS 159
Query: 85 SEPESSSYQENCRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDA 144
E + S + RKR+I S+ + R + +SRS T + + ++ +
Sbjct: 160 RERKKSRSRSRERKRRIRSRSRSRSRHRH----------RTRSRSRTRSRSRDRKKRIEK 209
Query: 145 HHRGS---SRACTGRSKRHRSRALEVQTPSLRK 174
R S SR + R R+ A++ Q R+
Sbjct: 210 PRRFSRSLSRTPSPPPFRGRNTAMDAQEALARR 242
Score = 30.8 bits (68), Expect = 1.4
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 5/129 (3%)
Query: 41 KGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRK 100
+ + K H S+ + ++ S+ + +KE+S + + NS+ E + + +
Sbjct: 64 RSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGR 123
Query: 101 ISSKDICQDRAGNCPEEECNLTLN-----KKSRSSTAVHNSEIQETCDAHHRGSSRACTG 155
S+ ++R E + + KKSRS + + + R SR+ +
Sbjct: 124 SHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSR 183
Query: 156 RSKRHRSRA 164
RHR+R+
Sbjct: 184 SRHRHRTRS 192
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 39.3 bits (90), Expect = 0.004
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 3 KGNEDPDLH-CSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQAG 61
+G EDP++ S+ Q +++ EK KK K + K F S KH + ++
Sbjct: 203 EGEEDPEVEFLKSLTTKQKQKLLRKLDRLEK----KKKKKDRKKKKFQKSRSKHKKHKSS 258
Query: 62 SDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECNL 121
S + + +S T+ S + SE ES++ ++ +++K K+ C N EE +
Sbjct: 259 SSSSSSSSSSSSTE----TSESSSESESNNKEKKIQRKK-RKKNKCSGH-NNSDSEEKDK 312
Query: 122 TLNKK--SRSSTAVHNSE 137
+ +K S++ HN E
Sbjct: 313 SKKRKLHEELSSSHHNRE 330
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 39.3 bits (90), Expect = 0.004
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 41 KGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEET-----KLKAGNSTAGSEPESSSYQEN 95
+ K K++ H SE+H ++ SD + NS E K K S+ G S +E
Sbjct: 15 ESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRER 74
Query: 96 CRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDA----HHRGSSR 151
+ + + + R+ + KKSRS + I+ + HR SR
Sbjct: 75 RHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSR 134
Query: 152 ACTGRSKRHRSRALE 166
+ T R R + +E
Sbjct: 135 SRTRSRSRDRKKRIE 149
Score = 34.3 bits (77), Expect = 0.13
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 25 QQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLKAGNSTAG 84
++++ +E G D K + K SHS + +R+ S K++ ++ + + +
Sbjct: 41 ERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRS 100
Query: 85 SEPESSSYQENCRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDA 144
E + S + RKR+I S+ + R + +SRS T + + ++ +
Sbjct: 101 RERKKSRSRSRERKRRIRSRSRSRSRHRH----------RTRSRSRTRSRSRDRKKRIEK 150
Query: 145 HHRGS---SRACTGRSKRHRSRALEVQTPSLRK 174
R S SR + R R+ A++ Q R+
Sbjct: 151 PRRFSRSLSRTPSPPPFRGRNTAMDAQEALARR 183
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 36.2 bits (82), Expect = 0.033
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 15/144 (10%)
Query: 31 EKGSDEKKPFKGKGKTAFSHSSEKHTQ--------RQAGSDPNPNKENSEETKLKAGNST 82
+K + K K K K+ KH + R G D KE +++ K +
Sbjct: 453 KKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQE 512
Query: 83 AGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETC 142
E S E+ SK +DR EC++T K S +NS +E
Sbjct: 513 RSRSKEKSKQLESKSNEHDHSKSKEKDRRAQSRSRECDITKGKHS------YNSRTRERS 566
Query: 143 DAHHRGSSRACTGRSKRHRSRALE 166
+ R S R + R RSR+ E
Sbjct: 567 RSRDR-SRRVRSRTHDRDRSRSKE 589
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 35.8 bits (81), Expect = 0.043
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 2 GKGNEDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQAG 61
G NED SS Q S + S E K+ K KGK+ S EK ++
Sbjct: 710 GDSNEDSSEDSSSEQDSESG----RESGLENKRTAKRNSKAKGKSD-SEDGEKENEKSKT 764
Query: 62 SDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISSKDICQDR 110
SD + N E + ++ +S + SE E S E+ R K K QDR
Sbjct: 765 SDSS----NDESSSIEDSSSDSESESEPESESESRRVTKEKEKKTKQDR 809
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 35.4 bits (80), Expect = 0.057
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 11 HCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQAGSDPNPNKEN 70
HCSS ++ + P + S E S + P K +HS + + G DP P K
Sbjct: 1962 HCSSPSHASGREPGAKPSTAEPSSSPQDP----PKPVAAHSESSSHKPRPGPDPGPPKTK 2017
Query: 71 SEETKLKAG----NSTAGSEPESSSYQENCRKRKISSK 104
+ L + +T G EP + S + R+ K SK
Sbjct: 2018 HPDRSLSSQKPSVGATKGKEPATQSLGGSSREGKGHSK 2055
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 35.0 bits (79), Expect = 0.074
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Query: 39 PFKGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRK 98
P G+ + A +H + R S SE+ K K+ T+ + S+S +
Sbjct: 115 PQGGRARGAMAHVGSRKRSR---SRSRSRGRGSEKRKKKSRKDTSRNCSASTS-----QG 166
Query: 99 RKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDAHHRGSSRACTGRSK 158
RK S+ + C E +++RSS++ +S + + SS + GR K
Sbjct: 167 RKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 226
Query: 159 RHRSRALEVQTPSLRKSLVTSVRAMSEA 186
R + + + RK L + +EA
Sbjct: 227 RGKYKDKRRKKKKKRKKLKKKGKEKAEA 254
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 33.9 bits (76), Expect = 0.16
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 15/147 (10%)
Query: 6 EDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKH-----TQRQA 60
+ P H + + + +++ + G+ KK K KG + ++ K T+RQ
Sbjct: 97 QTPFRHLYTSKTHLKKAEYKKSKDEKGGTPLKKDSKKKGGSYATNPESKQIVEEKTKRQN 156
Query: 61 GSDPNPNKENSEETKLKAGNSTAGSEPE---SSSYQENCRKRKISSKDICQDRAGNCPEE 117
+D P K + E + K S++ + PE S + +NC S KD +
Sbjct: 157 EADKTPLKSSHENEQSKKSKSSSETNPESQNSKTVSKNC-----SQKDKKDSKNSKKTNT 211
Query: 118 ECNLTLN--KKSRSSTAVHNSEIQETC 142
E T N KK + N I E C
Sbjct: 212 EFLHTKNNPKKDLKRSKTSNDPISEIC 238
>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
Length = 334
Score = 33.9 bits (76), Expect = 0.16
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 28 SFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLKAGNSTAGSEP 87
S TE+ S K+ K + +++ S SS+ T + K+ +++ K+ + + +P
Sbjct: 6 SDTEEESRSKRKKKHRRRSSSSSSSDSRTYSR--------KKGGRKSRSKSRSWSRDLQP 57
Query: 88 ESSSYQENCRKRKISSKDI--CQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDAH 145
S SY R R SS + R+ + ++SRS + S + +H
Sbjct: 58 RSHSYDRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSRSRPRLRSH 117
Query: 146 HRGSSRACTGRSKRHRSRALE 166
R S R+ + R R RSR E
Sbjct: 118 SRSSERS-SHRRTRSRSRDRE 137
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 33.9 bits (76), Expect = 0.16
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 41 KGKGKTAFSHSSEKHTQR-QAGSDPNPNKE------NSEETKLKAGNSTAGSEPESSSYQ 93
KG G S + + R +A S P P ++ + + + + GS S S
Sbjct: 78 KGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS 137
Query: 94 ENC-----RKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDAHHRG 148
+ +++K S KD ++ + + +E +++RSS++ +S + +
Sbjct: 138 RSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSS 197
Query: 149 SSRACTGRSKRHRSRALEVQTPSLRKSLVTSVRAMSEA 186
SS + GR KR + + + RK L + +EA
Sbjct: 198 SSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 235
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 33.9 bits (76), Expect = 0.16
Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 41 KGKGKTAFSHSSEKHTQR-QAGSDPNPNKE------NSEETKLKAGNSTAGSEPESSSYQ 93
KG G S + + R +A S P P ++ + + + + GS S S
Sbjct: 78 KGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS 137
Query: 94 ENC-----RKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDAHHRG 148
+ +++K S KD ++ + + +E +++RSS++ +S + +
Sbjct: 138 RSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSS 197
Query: 149 SSRACTGRSKRHRSRALEVQTPSLRKSLVTSVRAMSEA 186
SS + GR KR + + + RK L + +EA
Sbjct: 198 SSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 235
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 33.9 bits (76), Expect = 0.16
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 34 SDEKKPFKGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLKAGNSTAGSEPESSSYQ 93
SD ++P + GK S S EK + S +K N+E K + + P+S++ Q
Sbjct: 993 SDSREPTEKPGKAEKSKSPEKVSSFSNSSSNKESKVNNE--KFRTKSPKPAESPQSATKQ 1050
Query: 94 ENCRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDAHHR 147
+ D AGN ++CN T +HN + +T D ++R
Sbjct: 1051 LDQPTAAYEYYD-----AGNHWCKDCNTICGTMFDFFTHMHNKKHTQTLDPYNR 1099
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 33.5 bits (75), Expect = 0.22
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 31 EKGSDEKKPFKGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLKAGNSTAGSEPESS 90
EK + +K + K A S K ++ D N E S++ K + NS AG +P S
Sbjct: 740 EKKNVPEKHTREAQKQASEKVSNKGKRKHKNEDDNRASE-SKKPKTEDKNS-AGHKP--S 795
Query: 91 SYQENCRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDAHHRGSS 150
S +E+ ++ KD+ AG P ++ + R+ + + + + GSS
Sbjct: 796 SNRESSKQSAAKEKDLLPSPAGPVPSKDPKTEHGSRKRTISQSSSLKSSSNSNKETSGSS 855
Query: 151 RACTGRSKRHRS 162
+ + SK+ ++
Sbjct: 856 KNSSSTSKQKKT 867
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/140 (20%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 32 KGSDEKKPFKGKGKTAFSHSSEKHTQR--QAGSDPNPNKENSEETKLKAGNSTAGSEPES 89
K S E+ + + ++ S ++ ++R +AGS KE+++ ++ ++ + + E E
Sbjct: 358 KRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREH 417
Query: 90 SSYQENCRKRKISSKDI-----CQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDA 144
+ + + R+ + S++ + R+ + + + NL +SRS +A S+ + +
Sbjct: 418 AKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSA---SKTRSRSKS 474
Query: 145 HHRGSSRACTGRSKRHRSRA 164
R +SR+ + R SR+
Sbjct: 475 RSRSASRSPSRSRSRSHSRS 494
>gi|111607441 hypothetical protein LOC400506 [Homo sapiens]
Length = 458
Score = 33.1 bits (74), Expect = 0.28
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 11/144 (7%)
Query: 34 SDEKKPFKGKGKTAFSHSSEKHTQ---RQAGSDPNPNKENSEETKLKAGNSTAGSEPESS 90
S EKK K A SH+S T RQ + K+ + K K G +P +
Sbjct: 111 SGEKK--NKKSPLAMSHASGVKTSPDPRQGEEETRVGKKLKKHKKEKKG----AQDPTAF 164
Query: 91 SYQENCRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETCDAHHRGSS 150
S Q+ ++D+ + +EE K+ R S HN ++++ H G
Sbjct: 165 SVQDPWFCEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNGKVKKKKKIHQEGD- 223
Query: 151 RACTGRSKRHRSRALEVQTPSLRK 174
A G SK RS + S +K
Sbjct: 224 -ALPGHSKPSRSMESSPRKGSKKK 246
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 33.1 bits (74), Expect = 0.28
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 18 STDQPPFQQISFTEKGSDEKKPFKGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLK 77
+ D+ I K D KK +G+ + +FS + EKHT R S+ K+ S+ ++
Sbjct: 801 ANDRDQEMHIDLENKHGDPKKK-RGERRNSFSEN-EKHTHRIKDSENFRRKDRSKSKEMN 858
Query: 78 AGNSTAGSEPESSSYQENCRKR 99
+S GS + YQ +R
Sbjct: 859 RKHS--GSRSDEDRYQNGAERR 878
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 33.1 bits (74), Expect = 0.28
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 35 DEKKPFKGKGKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLKAGNSTAGSEPESSSYQE 94
D P +GK S+ K +R + P+P K+ +++ K + S+ S
Sbjct: 99 DLTPPPSSRGKKKKKKSTRKKRRRSSSYSPSPVKKKKKKSSKKHKRRRSFSKKRRHSSSS 158
Query: 95 NCRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQ-ETCDAHHRGSSRAC 153
KR+ + Q R+ ++ R + +SE + +C++ HRG S
Sbjct: 159 PKSKRRDEKRHKKQSRSRPRKSHR-----HRHHRCPSRSQSSESRPSSCESRHRGRSPEE 213
Query: 154 TGRSKRHRSR 163
+S+R SR
Sbjct: 214 GQKSRRRHSR 223
>gi|153792012 DNA polymerase zeta [Homo sapiens]
Length = 3130
Score = 32.7 bits (73), Expect = 0.37
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 44 GKTAFSHSSEKHTQRQAGSDPNPNKENSEETKLKAGNSTAGSEPESSSYQENCRKRKISS 103
GK +F+ S H++ + S+ N + GNSTA S SS+ ENC S
Sbjct: 703 GKNSFNFSDLNHSKNKVSSEGN-----------EKGNSTALSSLFPSSFTENCELLSCSG 751
Query: 104 KDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSE 137
++ + N +E L K H +E
Sbjct: 752 ENRTMVHSLNSTADESGLNKLKIRYEEFQEHKTE 785
>gi|41152097 DNA segment on chromosome X and Y (unique) 155
expressed sequence isoform 1 [Homo sapiens]
Length = 695
Score = 32.7 bits (73), Expect = 0.37
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 30 TEKGSDEKKPFKGKGKT-----AFSHSSEKHTQRQAGS--DPNPNKENSEETKLKAGNST 82
+E+ ++P KG+G+ A H E+ R+A S D P KE K
Sbjct: 574 SEQDKCNREPSKGRGRATGDGLADRHKRERSRARRASSREDGRPRKERRPHKK------- 626
Query: 83 AGSEPESSSYQENCRKRKISSKDICQDRAGNCPEEECNLTLNKKSRSSTAVHNSEIQETC 142
+Y+++ +R+ +S D + R + + ++ S++ H+
Sbjct: 627 -------HAYKDDSPRRRSTSPDHTRSRRSHSKDRHRRERSRERRGSASRKHS------- 672
Query: 143 DAHHRGSSRACTGRSKRHRS 162
H R S R+ + RHRS
Sbjct: 673 -RHRRRSERSRSRSPSRHRS 691
>gi|13128860 histone deacetylase 1 [Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.48
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 6 EDPDLHCSSIQCSTDQPPFQQISFTEKGSDEKKPFKG--KGKTAFSHSSEKHTQRQAGSD 63
+DPD S CS+D+ +I+ E+ SD ++ +G K + F + T+ + D
Sbjct: 399 DDPDKRISI--CSSDK----RIACEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKD 452
Query: 64 PNPNKENSEETKLKAGNSTAGSEPESSSYQENCR 97
P KE +EE K K +PE+ +E +
Sbjct: 453 PEEKKEVTEEEKTKE------EKPEAKGVKEEVK 480
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.124 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,472,525
Number of Sequences: 37866
Number of extensions: 599559
Number of successful extensions: 2053
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 1894
Number of HSP's gapped (non-prelim): 258
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.