Search of human proteins with 18426902

Search of human proteins with 18426902

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
         (665 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|18426902 Werner helicase interacting protein isoform 1 [Homo ...  1341   0.0  
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ...  1275   0.0  
gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]            55   2e-07
gi|6677723 replication factor C 5 isoform 1 [Homo sapiens]             51   4e-06
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]       49   1e-05
gi|194306571 replication factor C 5 isoform 2 [Homo sapiens]           48   3e-05
gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]           48   3e-05
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    47   6e-05
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [...    47   7e-05
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]    44   4e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            44   5e-04
gi|33239445 eukaryotic translation initiation factor 3, subunit ...    44   5e-04
gi|83367072 eukaryotic translation initiation factor 3, subunit ...    44   5e-04
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]    43   8e-04
gi|148806908 fibronectin type III domain containing 1 [Homo sapi...    43   8e-04
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              43   0.001
gi|24497554 homeobox A13 [Homo sapiens]                                42   0.001
gi|27894378 chloride intracellular channel 6 [Homo sapiens]            42   0.002
gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo ...    42   0.002
gi|28269687 zygote arrest 1 [Homo sapiens]                             42   0.002
gi|157504499 ankyrin repeat domain 47 [Homo sapiens]                   42   0.002
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      41   0.003
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ...    41   0.003
gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]            41   0.003
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    41   0.003
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]               41   0.003
gi|59806361 hypothetical protein LOC387104 [Homo sapiens]              41   0.004
gi|14550405 postreplication repair protein hRAD18p [Homo sapiens]      41   0.004
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...    41   0.004
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...    41   0.004

>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
           sapiens]
          Length = 665

 Score = 1341 bits (3470), Expect = 0.0
 Identities = 665/665 (100%), Positives = 665/665 (100%)

Query: 1   MEVSGPEDDPFLSQLHQVQCPVCQQMMPAAHINSHLDRCLLLHPAGHAEPAAGSHRAGER 60
           MEVSGPEDDPFLSQLHQVQCPVCQQMMPAAHINSHLDRCLLLHPAGHAEPAAGSHRAGER
Sbjct: 1   MEVSGPEDDPFLSQLHQVQCPVCQQMMPAAHINSHLDRCLLLHPAGHAEPAAGSHRAGER 60

Query: 61  AKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRESYDAPPTPSGA 120
           AKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRESYDAPPTPSGA
Sbjct: 61  AKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRESYDAPPTPSGA 120

Query: 121 RLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADA 180
           RLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADA
Sbjct: 121 RLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADA 180

Query: 181 DGEDDPGHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYF 240
           DGEDDPGHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYF
Sbjct: 181 DGEDDPGHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYF 240

Query: 241 GQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNA 300
           GQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNA
Sbjct: 241 GQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNA 300

Query: 301 KTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENP 360
           KTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENP
Sbjct: 301 KTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENP 360

Query: 361 SFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEP 420
           SFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEP
Sbjct: 361 SFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEP 420

Query: 421 AMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITEND 480
           AMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITEND
Sbjct: 421 AMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITEND 480

Query: 481 VKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLV 540
           VKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLV
Sbjct: 481 VKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLV 540

Query: 541 RFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNV 600
           RFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNV
Sbjct: 541 RFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNV 600

Query: 601 KACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFF 660
           KACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFF
Sbjct: 601 KACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFF 660

Query: 661 KQRRC 665
           KQRRC
Sbjct: 661 KQRRC 665


>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
           sapiens]
          Length = 640

 Score = 1275 bits (3299), Expect = 0.0
 Identities = 640/665 (96%), Positives = 640/665 (96%), Gaps = 25/665 (3%)

Query: 1   MEVSGPEDDPFLSQLHQVQCPVCQQMMPAAHINSHLDRCLLLHPAGHAEPAAGSHRAGER 60
           MEVSGPEDDPFLSQLHQVQCPVCQQMMPAAHINSHLDRCLLLHPAGHAEPAAGSHRAGER
Sbjct: 1   MEVSGPEDDPFLSQLHQVQCPVCQQMMPAAHINSHLDRCLLLHPAGHAEPAAGSHRAGER 60

Query: 61  AKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRESYDAPPTPSGA 120
           AKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRESYDAPPTPSGA
Sbjct: 61  AKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRESYDAPPTPSGA 120

Query: 121 RLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADA 180
           RLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADA
Sbjct: 121 RLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADA 180

Query: 181 DGEDDPGHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYF 240
           DGEDDPGHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYF
Sbjct: 181 DGEDDPGHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYF 240

Query: 241 GQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNA 300
           GQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNA
Sbjct: 241 GQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNA 300

Query: 301 KTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENP 360
           KTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQ                       
Sbjct: 301 KTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQ----------------------- 337

Query: 361 SFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEP 420
             QVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEP
Sbjct: 338 --QVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEP 395

Query: 421 AMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITEND 480
           AMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITEND
Sbjct: 396 AMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITEND 455

Query: 481 VKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLV 540
           VKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLV
Sbjct: 456 VKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLV 515

Query: 541 RFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNV 600
           RFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNV
Sbjct: 516 RFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNV 575

Query: 601 KACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFF 660
           KACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFF
Sbjct: 576 KACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFF 635

Query: 661 KQRRC 665
           KQRRC
Sbjct: 636 KQRRC 640


>gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
          Length = 354

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 64/269 (23%), Positives = 101/269 (37%), Gaps = 49/269 (18%)

Query: 187 GHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYFGQSKAV 246
           G  +A  ++ A AF  + G   H                P  +  RP  L +  G    V
Sbjct: 11  GEVEAQDSDPAPAFSKAPGSAGHYEL-------------PWVEKYRPVKLNEIVGNEDTV 57

Query: 247 GQDTLLRSLLETNEIPSLILWGPPGCGKTT----LAHIIASNSKKHSIRFVTLSATNAKT 302
            +   L        +P++I+ GPPG GKTT    LA  +   + K ++  + L+A+N + 
Sbjct: 58  SR---LEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM--LELNASNDRG 112

Query: 303 ND-VRDVIKQAQNEKSFFK--RKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTEN 359
            D VR+ IK    +K      R  I+ +DE        Q      +E  + T   A   N
Sbjct: 113 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 172

Query: 360 PSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSE 419
            S ++   + SRC V+   KL    ++T LM  I    +   D                 
Sbjct: 173 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDD---------------- 216

Query: 420 PAMFIEDKAVDTLAYLSDGDARAGLNGLQ 448
                    ++ + + + GD R  LN LQ
Sbjct: 217 --------GLEAIIFTAQGDMRQALNNLQ 237


>gi|6677723 replication factor C 5 isoform 1 [Homo sapiens]
          Length = 340

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 60/245 (24%), Positives = 98/245 (40%), Gaps = 36/245 (14%)

Query: 214 AAEEIRQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCG 273
           AA +IR +    P  +  RP TL D       +   + ++  +  + +P L+L+GPPG G
Sbjct: 13  AATKIRNL----PWVEKYRPQTLNDLISHQDIL---STIQKFINEDRLPHLLLYGPPGTG 65

Query: 274 KTTLAHIIAS---NSKKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFKRK-TILFID 328
           KT+     A      K+     + L+A++ +  D +R  I    + ++ FK+   ++ +D
Sbjct: 66  KTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILD 125

Query: 329 EIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTI 388
           E     +  Q+     +E  T         N   ++  AL SRC       L  E MV  
Sbjct: 126 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPR 185

Query: 389 LMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQ 448
           L         HV++                E  + I +  +  L  LS GD R  LN LQ
Sbjct: 186 LE--------HVVE----------------EEKVDISEDGMKALVTLSSGDMRRALNILQ 221

Query: 449 LAVLA 453
              +A
Sbjct: 222 STNMA 226


>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
          Length = 315

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 41/138 (29%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 50  PAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRE 109
           P  GS        GP  PG   RR +          P    ++  E ++ DD  E     
Sbjct: 126 PPGGSGGGSRLKPGPQLPGRGGRRAAGG--------PLGGGAAAPEDDDEDDDEELLEVR 177

Query: 110 SYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAV 169
             + P      R++P    AR  +   +G     AAAAAA S +P S DE   +EEEEA 
Sbjct: 178 LVETPGRELW-RMVPAGRAARGQAERAQGPSGEGAAAAAAASPTP-SEDEEPEEEEEEAA 235

Query: 170 GDGDGDGDADADGEDDPG 187
              +G+ +  A GE+  G
Sbjct: 236 AAEEGEEETVASGEESLG 253


>gi|194306571 replication factor C 5 isoform 2 [Homo sapiens]
          Length = 319

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 55/232 (23%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 227 LADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIAS--- 283
           + +  RP TL D       +   + ++  +  + +P L+L+GPPG GKT+     A    
Sbjct: 1   MVEKYRPQTLNDLISHQDIL---STIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY 57

Query: 284 NSKKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFKRK-TILFIDEIHRFNKSQQDTF 341
             K+     + L+A++ +  D +R  I    + ++ FK+   ++ +DE     +  Q+  
Sbjct: 58  KDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNAL 117

Query: 342 LPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVL 401
              +E  T         N   ++  AL SRC       L  E MV  L         HV+
Sbjct: 118 RRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE--------HVV 169

Query: 402 DSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLA 453
           +                E  + I +  +  L  LS GD R  LN LQ   +A
Sbjct: 170 E----------------EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMA 205


>gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]
          Length = 319

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 55/232 (23%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 227 LADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIAS--- 283
           + +  RP TL D       +   + ++  +  + +P L+L+GPPG GKT+     A    
Sbjct: 1   MVEKYRPQTLNDLISHQDIL---STIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY 57

Query: 284 NSKKHSIRFVTLSATNAKTND-VRDVIKQAQNEKSFFKRK-TILFIDEIHRFNKSQQDTF 341
             K+     + L+A++ +  D +R  I    + ++ FK+   ++ +DE     +  Q+  
Sbjct: 58  KDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNAL 117

Query: 342 LPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVL 401
              +E  T         N   ++  AL SRC       L  E MV  L         HV+
Sbjct: 118 RRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE--------HVV 169

Query: 402 DSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLA 453
           +                E  + I +  +  L  LS GD R  LN LQ   +A
Sbjct: 170 E----------------EEKVDISEDGMKALVTLSSGDMRRALNILQSTNMA 205


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 51/168 (30%), Positives = 65/168 (38%), Gaps = 25/168 (14%)

Query: 64   PSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDD----GGETESRESYDAPPT--- 116
            P PP A+ RRL       +PA P A      EGE G      GG+T      D P     
Sbjct: 1180 PPPPEAQPRRL-------EPAPPRARPEVAPEGEPGAPDSRAGGDTALSGDGDPPKPERK 1232

Query: 117  -PSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASP--------RSWDEAEAQEEEE 167
             P   RL  D    + +S   K    R + A    + +P          W+ A+A     
Sbjct: 1233 GPEMPRLFLDLGPPQGNSEQIKARLSRLSLALPPLTLTPFPGPGPRRPPWEGADAGAAGG 1292

Query: 168  AVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPRALAA 215
              G     G A+ DGED+    D +  E A A GA+ G R   RA AA
Sbjct: 1293 EAGGAGAPGPAEEDGEDEDE--DEEEDEEAAAPGAAAGPRGPGRARAA 1338



 Score = 33.5 bits (75), Expect = 0.65
 Identities = 49/188 (26%), Positives = 57/188 (30%), Gaps = 25/188 (13%)

Query: 46   GHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGET 105
            G  EP     RA E    P  PGA R  L  S       T TA     G G +   G   
Sbjct: 1111 GTLEPGT-ERRAPETGGAPRAPGAGRLDLG-SGGRAPVGTGTAPGGGPGSGVDAKAGWVD 1168

Query: 106  ESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEE 165
             +R     PP P      P     R   P                 A PR+  E  A E 
Sbjct: 1169 NTRPQPPPPPLPPPPEAQP-----RRLEP-----------------APPRARPEV-APEG 1205

Query: 166  EEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGK 225
            E    D    GD    G+ DP   +    E    F   G  + +   + A   R  L   
Sbjct: 1206 EPGAPDSRAGGDTALSGDGDPPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRLSLALP 1265

Query: 226  PLADTMRP 233
            PL  T  P
Sbjct: 1266 PLTLTPFP 1273


>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
           [Homo sapiens]
          Length = 531

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 7/149 (4%)

Query: 70  KRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRES--YDAPPTPSGARLIPDFP 127
           K R ++E     Q A     E+ E E EE ++  ETE +E+   D       +       
Sbjct: 352 KHRDMNEKELEAQEARKAQLENHEPEEEEEEEM-ETEEKEAGGSDEEQEKGSSSEKEGSE 410

Query: 128 VARSSSPGRKGSGKRPAAAAAAGSASPRSW-DEAEAQEEEEAVGDGDGDGDADADGEDDP 186
              S S   +  G R  A+  +GS    S  DEA A  ++E +   D D + DAD +D+ 
Sbjct: 411 DEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDED 470

Query: 187 GHWDADAAEAATAFGASGGG---RPHPRA 212
                  ++  +  G++GGG   R H R+
Sbjct: 471 RGQAQGGSDNDSDSGSNGGGQRSRSHSRS 499



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 16/144 (11%)

Query: 51  AAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESS-EGEGEEGDD-------- 101
           A GS    E+       G++       S  ++     A++ S  GE E  +D        
Sbjct: 391 AGGSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDK 450

Query: 102 ----GGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSW 157
               G + +S +  D+     G            S  G  G G+R  + + + S  P   
Sbjct: 451 EEIFGSDADSEDDADSDDEDRGQA---QGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGS 507

Query: 158 DEAEAQEEEEAVGDGDGDGDADAD 181
           + +  ++  EA      + D+D+D
Sbjct: 508 EHSAQEDGSEAAASDSSEADSDSD 531


>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
          Length = 511

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 63/255 (24%), Positives = 96/255 (37%), Gaps = 42/255 (16%)

Query: 25  QMMPAA---HINSHLDRCLLLHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALK 81
           Q++ AA    I + +D C  +     A   +           P  P   R RL    A +
Sbjct: 101 QVLTAASVLRIQTVIDECTQIIARARAPGTSAPTPLPTPVPPPLAPAQLRHRLRHLLAAR 160

Query: 82  QPATPTAAESSEGEGEEGDDGGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGK 141
            P  P AA S +             +R    APPTP+ A   PD   + S++P  +G   
Sbjct: 161 PPGHPGAAHSRKQR---------QPARLQLPAPPTPAKAEG-PDADPSLSAAPDDRG--- 207

Query: 142 RPAAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFG 201
                           DE + + ++E  G+ DG+G    +G+  P   D  A     A  
Sbjct: 208 ----------------DEDDEESDDETDGE-DGEGGGPGEGQAPPSFPDCAAGFLTAAAD 250

Query: 202 ASGGGRPHPRALA--AEEIRQMLQGKPLADTMRPDT-LQDYFGQSKAVGQDTLLRSLLET 258
           ++    P P  LA  +   R  L+G   A+ + PD+ +  +  +  AV +        ET
Sbjct: 251 SACEEPPAPTGLADYSGAGRDFLRGAGSAEDVFPDSYVSTWHDEDGAVPEG----CPTET 306

Query: 259 NEIPSLILWG--PPG 271
              P  IL G  PPG
Sbjct: 307 PVQPDCILSGSRPPG 321


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 52/176 (29%), Positives = 66/176 (37%), Gaps = 31/176 (17%)

Query: 45  AGHAEPAAGSHRAGE---RAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDD 101
           AG    AAG+   G    R + P+  GAK R     S  +Q A    A S  G G +   
Sbjct: 509 AGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGGNKQSR 568

Query: 102 GGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPA-AAAAAGSASPRSWDEA 160
           GG               G      +    +++  R G  K+P    AAAG    RS D  
Sbjct: 569 GG---------------GGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDGG 613

Query: 161 EAQEEEEAVGDGDGDGDADADGEDDP---GHWDADAAEAATAFGAS--GGGRPHPR 211
           +    ++A G G       A     P   G  DA AAE A A GA+  G G   PR
Sbjct: 614 KKAWRQKAAGTG-------AKSRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQPR 662



 Score = 37.0 bits (84), Expect = 0.059
 Identities = 53/192 (27%), Positives = 70/192 (36%), Gaps = 32/192 (16%)

Query: 51  AAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRES 110
           AAG+ R G   +  +  G K R+       K      +A  ++  G  GD  G  E++  
Sbjct: 337 AAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGG-GDKKGLREAKRR 395

Query: 111 YDAPPTP---SGARLIPDFPVARSSSPGRKGSGKR-PAAAAAAGSAS-------PRSWDE 159
            D    P   +  R     P A+    G K   +R P AA + G  S       PR   +
Sbjct: 396 GDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQ 455

Query: 160 AEAQEEEEAVGDGDGDGD-----ADADGEDDPGH----------W----DADAA-EAATA 199
              Q+  EA  +  GD       A A G    G           W     A+AA E ATA
Sbjct: 456 KARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRRGQKAEAAGEKATA 515

Query: 200 FGASGGGRPHPR 211
            GA   GR  PR
Sbjct: 516 AGAKSRGRKQPR 527


>gi|33239445 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 19/144 (13%)

Query: 41  LLHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGD 100
           LL PAG   P A    A     G +  G       ES    +PA    AE++ G  E   
Sbjct: 34  LLRPAGPGAPEAAGTEASSEEVGIAEAGP------ESEVRTEPAAE--AEAASGPSESPS 85

Query: 101 DGGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEA 160
                E   S+  PP P           A+  +PG +   +R  + A A S      +  
Sbjct: 86  PPAAEELPGSHAEPPVP-----------AQGEAPGEQARDERSDSRAQAVSEDAGGNEGR 134

Query: 161 EAQEEEEAVGDGDGDGDADADGED 184
            A+ E  A+ +GD D  + +D ED
Sbjct: 135 AAEAEPRALENGDADEPSFSDPED 158


>gi|83367072 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 19/144 (13%)

Query: 41  LLHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGD 100
           LL PAG   P A    A     G +  G       ES    +PA    AE++ G  E   
Sbjct: 34  LLRPAGPGAPEAAGTEASSEEVGIAEAGP------ESEVRTEPAAE--AEAASGPSESPS 85

Query: 101 DGGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEA 160
                E   S+  PP P           A+  +PG +   +R  + A A S      +  
Sbjct: 86  PPAAEELPGSHAEPPVP-----------AQGEAPGEQARDERSDSRAQAVSEDAGGNEGR 134

Query: 161 EAQEEEEAVGDGDGDGDADADGED 184
            A+ E  A+ +GD D  + +D ED
Sbjct: 135 AAEAEPRALENGDADEPSFSDPED 158


>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
          Length = 1759

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 36/95 (37%), Positives = 45/95 (47%), Gaps = 13/95 (13%)

Query: 131  SSSPG-RKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADADGEDDPGHW 189
            +++PG R+G+    AAAAAAG +S    +E     EEEA  D D D D D D EDD    
Sbjct: 1654 AAAPGPREGAA---AAAAAAGESSQEDEEEELELPEEEAEDDEDEDDDEDDDDEDDDEDD 1710

Query: 190  DAD---------AAEAATAFGASGGGRPHPRALAA 215
            D +           EAA     +G   P   ALAA
Sbjct: 1711 DDEDLRTDSEESLPEAAAEAAGAGARTPALAALAA 1745


>gi|148806908 fibronectin type III domain containing 1 [Homo
           sapiens]
          Length = 1894

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 14/168 (8%)

Query: 42  LHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDD 101
           LHP G    A    R        SP    R R S     K PA+P       G  EE   
Sbjct: 657 LHPKG----AFAQPRPALSPSRQSPSSVLRDRSSVHPGAK-PASPARRTPHSGAAEEDSS 711

Query: 102 GGETESRESYDAPPTPSGARLIPDFPVARSS-SPGRKGSGKRPAAAAAAGSASPRSWDEA 160
                SR S   PP    +RL+P  P   S  S G K     PA  + A S S  S   +
Sbjct: 712 ASAPPSRLS---PPHGGSSRLLPTQPHLSSPLSKGGKDGEDAPATNSNAPSRSTMSSSVS 768

Query: 161 EAQEEEEAVGDG----DGDGDADADGEDDPGHWDADAAEAATAFGASG 204
                   V +G    DG+   D D ED  G      A+   A  ASG
Sbjct: 769 SHLSSRTQVSEGAEASDGESHGDGDREDG-GRQAEATAQTLRARPASG 815



 Score = 37.0 bits (84), Expect = 0.059
 Identities = 51/192 (26%), Positives = 69/192 (35%), Gaps = 34/192 (17%)

Query: 47   HAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETE 106
            HA PA     A    + PS P    RR++   A +Q   P  A S    G +  D G + 
Sbjct: 975  HASPARPP--AARSQQHPSVP----RRMTPGRAPQQQPPPPVATSQHHPGPQSRDAGRSP 1028

Query: 107  SRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEE 166
            S+       T +G          R +S GR  S   P  A++ G         A   ++E
Sbjct: 1029 SQPRLSL--TQAGR--------PRPTSQGRSHSSSDPYTASSRGML-----PTALQNQDE 1073

Query: 167  EAVGDGDGDG-DADADGEDDPGHWDADAAEAATAF-----------GASGGGRPHPRALA 214
            +A G  D D  + +A     P H  A A EAA +              +GG     R  A
Sbjct: 1074 DAQGSYDDDSTEVEAQDVRAPAH-AARAKEAAASLPKHQQVESPTGAGAGGDHRSQRGHA 1132

Query: 215  AEEIRQMLQGKP 226
            A   R    G P
Sbjct: 1133 ASPARPSRPGGP 1144



 Score = 30.0 bits (66), Expect = 7.2
 Identities = 33/129 (25%), Positives = 42/129 (32%), Gaps = 20/129 (15%)

Query: 90   ESSEGEGEEGDDGGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAA 149
            ES  G G  GD   +     S   P  P G       P +R+  P R   GK    +   
Sbjct: 1114 ESPTGAGAGGDHRSQRGHAASPARPSRPGG-------PQSRARVPSRAAPGKSEPPSKRP 1166

Query: 150  GSASPRSWDEAEAQEEEEAVGDGDGDGD-------------ADADGEDDPGHWDADAAEA 196
             S+  +    AE  EEE+A     G  D                 G+D  G    +  E 
Sbjct: 1167 LSSKSQQSVSAEDDEEEDAGFFKGGKEDLLSSSVPKWPSSSTPRGGKDADGSLAKEEREP 1226

Query: 197  ATAFGASGG 205
            A A    GG
Sbjct: 1227 AIALAPRGG 1235


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 43/198 (21%)

Query: 59   ERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEG-------EGEEGDD-GGETESRES 110
            + A+G + P ++     E+    Q A   A   S+G       EGEE  +  GET+  E 
Sbjct: 1987 QEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEG 2046

Query: 111  YDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWD------EAEAQE 164
             DA P   G     + P A   +   +G  +      A G A P S D      E EAQ 
Sbjct: 2047 -DAQPESDGV----EAPEAEEEAQEAEGEVQE-----AEGEAHPESEDVDAQEAEGEAQP 2096

Query: 165  EEEAVGDGDGDGDA---------DADGEDDPGHWDADAAEA----------ATAFGASGG 205
            E E V   + +G+A         + +GE  P     +A EA            A  A G 
Sbjct: 2097 ESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGE 2156

Query: 206  GRPHPRALAAEEIRQMLQ 223
             +P    + A+E  +  Q
Sbjct: 2157 AQPESEGIEAQEAEEEAQ 2174



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 15/146 (10%)

Query: 89   AESSEGEGEEGDDG-------GETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGK 141
            A+ +EGE +   +G       GE +  E  +AP T   A+   +   A  +    +   +
Sbjct: 2087 AQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESE 2146

Query: 142  RPAAAAAAGSASPRSWDEAEAQE-EEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAF 200
               A  A G A P S +  EAQE EEEA  + +G    +A+GE  P     +A E     
Sbjct: 2147 GVEAQDAEGEAQPES-EGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPE----- 2200

Query: 201  GASGGGRPHPRALAAEEIRQMLQGKP 226
             A G  +P    + A E  +  Q +P
Sbjct: 2201 -AEGEAQPELEGVEAPEAEEEAQPEP 2225



 Score = 38.9 bits (89), Expect = 0.015
 Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 19/181 (10%)

Query: 45   AGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATP-TAAESSEGEGEEGDDGG 103
            +GH +   G   AG         GA+     E+    QP +    A  +EG+ +E +   
Sbjct: 1808 SGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEA 1867

Query: 104  ETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQ 163
            + ES E  +AP     A+          S        +      + G+ +P +  E EAQ
Sbjct: 1868 QPES-EDVEAPEAEGEAQ--------PESEDVETPEAEWEVQPESEGAEAPEA--EKEAQ 1916

Query: 164  EEEEAVGDGDGDGDADADGEDDPGHWDADAAEA-ATAFGASGGGRPHPRALAAEEIRQML 222
             E E+V         + +GED+P    A+A EA   A  A G  +P    + ++E  +  
Sbjct: 1917 PETESVEA------LETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEA 1970

Query: 223  Q 223
            Q
Sbjct: 1971 Q 1971



 Score = 38.1 bits (87), Expect = 0.026
 Identities = 44/156 (28%), Positives = 59/156 (37%), Gaps = 28/156 (17%)

Query: 49   EPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESS------EGEG--EEGD 100
            E   GS R   R K P    A+   +++    K   + T+A S       EGEG  E G+
Sbjct: 1744 EDGEGSQRLN-RDKDPKLGEAEGDAMAQEREGKTHNSETSAGSELGEAEQEGEGISERGE 1802

Query: 101  DGGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEA 160
             GG+    E            L  +        PG+    +   A  A G A P    E+
Sbjct: 1803 TGGQGSGHED----------NLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQP----ES 1848

Query: 161  EAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEA 196
            E  E  EA GD       +A+GE  P   D +A EA
Sbjct: 1849 EGVEAPEAEGDAQ-----EAEGEAQPESEDVEAPEA 1879



 Score = 35.4 bits (80), Expect = 0.17
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 11/142 (7%)

Query: 46   GHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATP-TAAESSEGEGEEGDDGGE 104
            G A+ A G        +G + P ++     E+    QP +    A+ +EGE +   +G E
Sbjct: 2108 GEAQKAEGIE--APETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIE 2165

Query: 105  TESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQE 164
             +  E  +A P   G         A+  S G +       A  A G A P        + 
Sbjct: 2166 AQEAEE-EAQPELEGVEAPEAEGEAQPESEGIE-------APEAEGEAQPELEGVEAPEA 2217

Query: 165  EEEAVGDGDGDGDADADGEDDP 186
            EEEA  + +G    +A+GE  P
Sbjct: 2218 EEEAQPEPEGVETPEAEGEAQP 2239



 Score = 33.5 bits (75), Expect = 0.65
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 16/139 (11%)

Query: 46   GHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGE-EGDDGGE 104
            G A+P +    A E A+G + P  +     E+    QP  P   E+ E EGE + +  GE
Sbjct: 2187 GEAQPESEGIEAPE-AEGEAQPELEGVEAPEAEEEAQPE-PEGVETPEAEGEAQPESEGE 2244

Query: 105  TESRESYDAPPTPSG----------ARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASP 154
            T+  E   +P    G          +  +P+       SPG     +RP +     S+  
Sbjct: 2245 TQG-EKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRA 2303

Query: 155  RSWDEA--EAQEEEEAVGD 171
             SW     +  E +  +GD
Sbjct: 2304 SSWGNCWQKDSENDHVLGD 2322


>gi|24497554 homeobox A13 [Homo sapiens]
          Length = 388

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 38  RCLLLHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGE 97
           R L+ HPA  A  AA ++ +   A G +PP A     + ++A    A   AA SS G G 
Sbjct: 88  RNLMAHPAPLAPGAASAYSS---APGEAPPSAAAAAAAAAAAA---AAAAAASSSGGPGP 141

Query: 98  EGDDGGETESRES--YDAPPTPSGARLIP-------DFPVAR-SSSPGRKGSGKRPAAAA 147
            G  G E   + S    A  + SG   +P        +P AR    P    S  +PA+AA
Sbjct: 142 AGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCARMGPHPNAIKSCAQPASAA 201

Query: 148 AAGSASPRSWDEAEAQEEE 166
           AA + + +  D A    EE
Sbjct: 202 AAAAFADKYMDTAGPAAEE 220



 Score = 33.9 bits (76), Expect = 0.50
 Identities = 17/25 (68%), Positives = 17/25 (68%)

Query: 191 ADAAEAATAFGASGGGRPHPRALAA 215
           A AA AA A GA GGG PHP A AA
Sbjct: 42  AAAAAAAAAAGAGGGGFPHPAAAAA 66



 Score = 29.6 bits (65), Expect = 9.3
 Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 17/104 (16%)

Query: 120 ARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDGD-GDGDA 178
           A L P    A SS+PG        AAAAAA +A       A A     + G G  G   A
Sbjct: 95  APLAPGAASAYSSAPGEAPPSAAAAAAAAAAAA-------AAAAAASSSGGPGPAGPAGA 147

Query: 179 DADGEDDPGHWDADAAE--AATAFGASGGG-------RPHPRAL 213
           +A  +  P    A ++   AA  +G  G G        PHP A+
Sbjct: 148 EAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCARMGPHPNAI 191


>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
          Length = 686

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 7/145 (4%)

Query: 44  PAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPAT--PTAAESSEGEGEEGDD 101
           PA  AE       AG  A+GP            ++A+K+     P     +E  G  G  
Sbjct: 21  PAPLAERPGEPGAAGGEAEGPEGSEGAEEAPRGAAAVKEAGGGGPDRGPEAEARGTRGAH 80

Query: 102 GGETESRESY-DAPPTPSGARLIPDFPVARSSSPGR--KGSGKRPAAAAAAGSASPRSWD 158
           G ETE+ E   +    P G            +SPGR  +G  +  A      SA+P   +
Sbjct: 81  G-ETEAEEGAPEGAEVPQGGEETSGAQQVEGASPGRGAQGEPRGEAQREPEDSAAPERQE 139

Query: 159 EAEAQEE-EEAVGDGDGDGDADADG 182
           EAE + E  E    G+     DA+G
Sbjct: 140 EAEQRPEVPEGSASGEAGDSVDAEG 164



 Score = 35.0 bits (79), Expect = 0.22
 Identities = 32/126 (25%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 106 ESRESYDAPPTPSGARLIPDFPVARSSSP-----------GRKGSGKRPAAAAA---AGS 151
           E+ E     P P G   +P     R   P           G +G+ + P  AAA   AG 
Sbjct: 3   EAAEPEGVAPGPQGPPEVPAPLAERPGEPGAAGGEAEGPEGSEGAEEAPRGAAAVKEAGG 62

Query: 152 ASPRSWDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPR 211
             P    EAEA+    A G+ + +  A    E   G  +   A+         G +  PR
Sbjct: 63  GGPDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQGGEETSGAQQVEGASPGRGAQGEPR 122

Query: 212 ALAAEE 217
             A  E
Sbjct: 123 GEAQRE 128



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 42/179 (23%), Positives = 59/179 (32%), Gaps = 19/179 (10%)

Query: 44  PAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGG 103
           PAG +  A G   AG+      P G  RR   E       +    AE+ E     G+  G
Sbjct: 265 PAGDSVEAEGP--AGDSMDAEGPAGRARRVSGEPQQSGDGSLSPQAEAIEVAA--GESAG 320

Query: 104 ETESRESYDAPPTPSGARLIPDFPVARSSSPG---------RKGSG--KRPAAAAAAGSA 152
            +    ++DA         +P    +  ++PG         R G G  + P         
Sbjct: 321 RSPGELAWDAAEEAE----VPGVKGSEEAAPGDARADAGEDRVGDGPQQEPGEDEERRER 376

Query: 153 SPRSWDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPR 211
           SP    E EA   EE   D    G+A     +         AE   A G+    R + R
Sbjct: 377 SPEGPREEEAAGGEEESPDSSPHGEASRGAAEPEAQLSNHLAEEGPAEGSGEAARVNGR 435



 Score = 30.4 bits (67), Expect = 5.5
 Identities = 38/146 (26%), Positives = 49/146 (33%), Gaps = 12/146 (8%)

Query: 49  EPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEG----EGEEGDDGGE 104
           E   G    G  A+     GA     +E  A +    P   E + G    EG     G +
Sbjct: 59  EAGGGGPDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQGGEETSGAQQVEGASPGRGAQ 118

Query: 105 TESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQE 164
            E R      P  S A    +    R   P    SG+   +  A G        E  A +
Sbjct: 119 GEPRGEAQREPEDSAAPERQEEAEQRPEVPEGSASGEAGDSVDAEGPLGDNIEAEGPAGD 178

Query: 165 EEEA---VGDG-DGDGDA----DADG 182
             EA   VGD  D +G A    DA+G
Sbjct: 179 SVEAEGRVGDSVDAEGPAGDSVDAEG 204


>gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
           sapiens]
          Length = 316

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 44/173 (25%), Positives = 62/173 (35%), Gaps = 15/173 (8%)

Query: 54  SHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRESYDA 113
           SHR   + +      A+ R L      K+P    +   S+       D   + SR     
Sbjct: 82  SHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSR 141

Query: 114 PPTPSGARLIP----DFPVARSSSPGRK-GSGKRP----AAAAAAGSASPRSWDEAEAQE 164
           P T  G    P    D      S  G+K   G++P      + AAG+ S     +   Q+
Sbjct: 142 PQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEGGKKPRQQ 201

Query: 165 EEEAVGDGDGDGDADAD--GEDDPGHWDADAAEAATAFGASGGGRPHPRALAA 215
           +  A G   G GD  +   G   PG W  +A    T     GGG   P+  AA
Sbjct: 202 KPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETC----GGGGKKPQKAAA 250



 Score = 30.4 bits (67), Expect = 5.5
 Identities = 44/182 (24%), Positives = 61/182 (33%), Gaps = 41/182 (22%)

Query: 56  RAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGETESRESYDAPP 115
           R  + A G    G K+ R       +   +  A   S GEG           ++     P
Sbjct: 154 RQKDAAAGAKSRGGKKPRRGRKPRRRGQKSTAAGAKSRGEG----------GKKPRQQKP 203

Query: 116 TPSGARL-IPDFPVAR--SSSPGR-----------KGSGKRPAAAAAAGSAS----PRSW 157
             +GA+  + D    R     PGR            G GK+P  AAA G+ S     R W
Sbjct: 204 AAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQW 263

Query: 158 DEAEAQEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPRALAAEE 217
            +A A++   A             G +  G     AA A    G  GG +   R   A +
Sbjct: 264 QKAAAEKVAVA-------------GAESCGGRGQKAAAARAKSGGFGGKKQRRRGQRAPK 310

Query: 218 IR 219
            R
Sbjct: 311 SR 312


>gi|28269687 zygote arrest 1 [Homo sapiens]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 36/115 (31%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 50  PAAGSHRAG--ERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEG------EEGDD 101
           PAAG  R+G  +  +GP P   +     E    K P  P + +  E +       E+  D
Sbjct: 199 PAAGEQRSGASDGERGPPPARLQGPEEGEVWTKKAPRRPQSDDDGEAQAAVRASWEQPAD 258

Query: 102 GGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRS 156
           G E   RE+ +    P  A   P  P   S+   R G   R AA A  G  SPRS
Sbjct: 259 GPELPPREAQEGEAAPRSALRSPGQP--PSAGRARDGGDGREAAVAGEG-PSPRS 310


>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
          Length = 821

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 15/204 (7%)

Query: 29  AAHINSHLDRCLLLHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTA 88
           AA     L R  L H  G +E   G  R  E A+  +   A   R     A  Q     A
Sbjct: 350 AAERELELLRASLEHQRGVSELLRGRLRELEEAREAAEEAAAGARAQLREATTQTPWSCA 409

Query: 89  AESSEGEGEEGDDGGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAA 148
            ++++ E        E  S     +P +  G R +    + +S    R G+   P A  +
Sbjct: 410 EKAAQTESP-----AEAPSLTQESSPGSMDGDRAVAPAGILKSIMKKRDGT---PGAQPS 461

Query: 149 AGSASPRSWDEAEAQEEEEAVGDG-DGDGDADADGEDDPGHWDADA------AEAATAFG 201
           +G  S +       + E  +  D  D DGD++  G + PG            +++ T   
Sbjct: 462 SGPKSLQFVGVLNGEYESSSSEDASDSDGDSENGGAEPPGSSSGSGDDSGGGSDSGTPGP 521

Query: 202 ASGGGRPHPRALAAEEIRQMLQGK 225
            SGG    P   A  E +Q+ QG+
Sbjct: 522 PSGGDIRDPEPEAEAEPQQVAQGR 545


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 47/174 (27%), Positives = 56/174 (32%), Gaps = 21/174 (12%)

Query: 57  AGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGGE----TESRESYD 112
           AGER   P P G K     E+    +   P A   +   G  G DG         ++   
Sbjct: 508 AGERGS-PGPAGPKGSP-GEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP 565

Query: 113 APPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEAQEEEEAVGDG 172
            PP P GAR            PG KG+   P  A   G   P             AVG  
Sbjct: 566 GPPGPPGAR----GQAGVMGFPGPKGAAGEPGKAGERGVPGPPG-----------AVGPA 610

Query: 173 DGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKP 226
             DG+A A G   P     +  E   A      G P P     E  +   QG P
Sbjct: 611 GKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVP 664



 Score = 37.7 bits (86), Expect = 0.034
 Identities = 50/190 (26%), Positives = 68/190 (35%), Gaps = 35/190 (18%)

Query: 44  PAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEG-EGEEGDDG 102
           P+G A P       G+R + P PPG               A P  A+   G +GE GD G
Sbjct: 786 PSGPAGPTGARGAPGDRGE-PGPPGPAGF-----------AGPPGADGQPGAKGEPGDAG 833

Query: 103 GETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKR---------PAAAAAAGSAS 153
            + ++      PP P+G    P  P+    +PG KG+            P AA   G   
Sbjct: 834 AKGDA-----GPPGPAGPAGPPG-PIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887

Query: 154 PRSWDEAEAQE----EEEAVGDGDGDGDADADGEDDPGHWDADAAEAAT--AFGASGG-G 206
           P              +E   G     G A   GE  P      A E  +  A G +G  G
Sbjct: 888 PSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPG 947

Query: 207 RPHPRALAAE 216
            P P+ +A +
Sbjct: 948 TPGPQGIAGQ 957



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 40/151 (26%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 44  PAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDGG 103
           P G A P       G  AKG + P   R          +P  P  A ++   G  G DG 
Sbjct: 336 PTGPAGPPGFPGAVG--AKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADG- 392

Query: 104 ETESRESYDAPPTPSGARLIPDFPVARSSS--------PGRKGSGKRPAAAAAAGSASPR 155
                +  +  P  +GA   P FP AR  S        PG KG+   P A  + G    +
Sbjct: 393 -QPGAKGANGAPGIAGA---PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK 448

Query: 156 SWDEAEAQEEEEAVGDGDGDGDADADGEDDP 186
              E      +   G    +G   A GE  P
Sbjct: 449 G--EPGPVGVQGPPGPAGEEGKRGARGEPGP 477



 Score = 30.8 bits (68), Expect = 4.2
 Identities = 44/176 (25%), Positives = 61/176 (34%), Gaps = 28/176 (15%)

Query: 46  GHAEPAAGSHRAGERAK-----GPSPPGAKRRRLSESSALKQ----PATPTAAESSEG-E 95
           G A P   + + GE+        P P GA+  R        Q    PA P  A  + G +
Sbjct: 647 GPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGND 706

Query: 96  GEEGDDGGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPR 155
           G +GD G          AP  P G++  P         PG +G+   P      G A P+
Sbjct: 707 GAKGDAG----------APGAP-GSQGAPGL----QGMPGERGAAGLPGPKGDRGDAGPK 751

Query: 156 SWDEAEAQEEEEAV-GDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGGRPHP 210
             D +  ++    + G     G A A G  D G          T    + G R  P
Sbjct: 752 GADGSPGKDGVRGLTGPIGPPGPAGAPG--DKGESGPSGPAGPTGARGAPGDRGEP 805


>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
           [Homo sapiens]
          Length = 593

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 21/152 (13%)

Query: 42  LHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDD 101
           L P   A P   +  A +  + P     +R +++  +A++  A      +S G  E+G  
Sbjct: 27  LPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPP 86

Query: 102 GGETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAE 161
           G E E       P +P                 GR+G G+      A+       W+E E
Sbjct: 87  GSEEEDAAREGTPGSP---------------GRGREGPGEEHFEDMASDEDMKPKWEEEE 131

Query: 162 AQ------EEEEAVGDGDGDGDADADGEDDPG 187
            +      EEEE     D + + D +G   PG
Sbjct: 132 MEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPG 163


>gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]
          Length = 320

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 56/262 (21%), Positives = 89/262 (33%), Gaps = 69/262 (26%)

Query: 187 GHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYFGQSKAV 246
           G  +A  ++ A AF  + G   H                P  +  RP  L +  G    V
Sbjct: 11  GEVEAQDSDPAPAFSKAPGSAGHYEL-------------PWVEKYRPVKLNEIVGNEDTV 57

Query: 247 GQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSKKHSIRFVTLSATNAKTNDVR 306
            +   L        +P++I+ GPPG GKTT    +A      +++   L   NA  + + 
Sbjct: 58  SR---LEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLE-LNASNDSMT 113

Query: 307 DVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNA 366
           D  +QA        R+T+    +  RF                     A   N S ++  
Sbjct: 114 DGAQQA-------LRRTMEIYSKTTRF---------------------ALACNASDKIIE 145

Query: 367 ALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIED 426
            + SRC V+   KL    ++T LM  I    +   D                        
Sbjct: 146 PIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDD----------------------- 182

Query: 427 KAVDTLAYLSDGDARAGLNGLQ 448
             ++ + + + GD R  LN LQ
Sbjct: 183 -GLEAIIFTAQGDMRQALNNLQ 203


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
            sapiens]
          Length = 1152

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 40/192 (20%), Positives = 64/192 (33%), Gaps = 21/192 (10%)

Query: 46   GHAEPAAGSHRAGE---RAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDDG 102
            G  E   G    GE     +G    G +     E    ++       E  EGEGEE +  
Sbjct: 842  GEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGE 901

Query: 103  GETESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGK-RPAAAAAAGSASPRSWDEAE 161
            GE E     +        +             G +G G+         G       +E E
Sbjct: 902  GEGEEEGEGEGEEEEGEGK---------GEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEE 952

Query: 162  AQ---EEEEAVGDGDGDG-----DADADGEDDPGHWDADAAEAATAFGASGGGRPHPRAL 213
             +   EEEE  G+G+ +G     + + +GE++ G  + +  E        G G       
Sbjct: 953  GEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGE 1012

Query: 214  AAEEIRQMLQGK 225
              EE    ++G+
Sbjct: 1013 GEEEEEGEVEGE 1024



 Score = 37.7 bits (86), Expect = 0.034
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 9/164 (5%)

Query: 49  EPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAES-SEGEGEEGDDGGETES 107
           E   G    GER K       + R   E    ++       E  +EG GEE ++GGE E 
Sbjct: 757 EEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEG 816

Query: 108 RESYDAP-----PTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEAEA 162
            E  +           G     +         G +  G+                +E E 
Sbjct: 817 GEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEG 876

Query: 163 QEEEEAVGDGDGDGDADADGEDDPGHWDADAAEAATAFGASGGG 206
           + EEE   +G+G+G+ + +GE +    + +  E     G    G
Sbjct: 877 EGEEE---EGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEG 917


>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
          Length = 540

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 63/250 (25%), Positives = 87/250 (34%), Gaps = 47/250 (18%)

Query: 44  PAGHAEPAAGSHRAGER-AKGPSPPGAKRRRLSESSALKQPATPTAAESSEG-EGEEGDD 101
           P G   P   + + G R A+GP+ P  +  +  E      P  P   +   G  G++GDD
Sbjct: 191 PPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMG----PKGPPGPKGEPGVPGKKGDD 246

Query: 102 GGETESRESYDAPPTPSG--ARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDE 159
           G       S   PP P G    + P        +PG KG    P      G+A PR    
Sbjct: 247 G-----TPSQPGPPGPKGEPGSMGPRGENGVDGAPGPKGE---PGHRGTDGAAGPRGAPG 298

Query: 160 AEAQEEEEAVGDGDG---DGDADADG-EDDPGHWDADAAEAATAFGASGG---------- 205
            + ++ +  V D DG   D      G +  PG      A+       + G          
Sbjct: 299 LKGEQGDTVVIDYDGRILDALKGPPGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPKGQ 358

Query: 206 ----GRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEI 261
               G P P  L  E     L G P AD ++        G+      D+L  SL +    
Sbjct: 359 KGDPGEPGPAGLKGEAGEMGLSGLPGADGLK--------GEKGESASDSLQESLAQLIVE 410

Query: 262 PSLILWGPPG 271
           P     GPPG
Sbjct: 411 P-----GPPG 415


>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
          Length = 947

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 38/136 (27%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 42  LHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPTAAESSEGEGEEGDD 101
           + P   AE A  +  A    + P PP    R L ES   K    P   E   G GE G  
Sbjct: 118 VQPVAGAEAAPAATLAALGGRRPGPPEEPPREL-ESVPSKLGEPPPLGEGGGGGGEGGGA 176

Query: 102 GGETESRE-SYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRSWDEA 160
           GG +  RE     PP P G R      V      G  G G  P+ ++++   +P +    
Sbjct: 177 GGGSGEREGGAPQPPPPRGWR---GKGVRAQQRGGSGGEGASPSPSSSSAGKTPGT---G 230

Query: 161 EAQEEEEAVGDGDGDG 176
                    G G G G
Sbjct: 231 SRNSGSGVAGGGSGGG 246


>gi|14550405 postreplication repair protein hRAD18p [Homo sapiens]
          Length = 495

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 6   PEDDPFLSQLHQVQCPVCQQMMPAAHINSHLDRCL 40
           P     L Q+ +V CPVC   +P +HIN HLD CL
Sbjct: 190 PPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCL 224


>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
            [Homo sapiens]
          Length = 2000

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 49/172 (28%), Positives = 66/172 (38%), Gaps = 31/172 (18%)

Query: 49   EPAAGSHRAGERAKGPSP--PGAKRRRLSESSALKQPATPTAAESSEG-----EGEEGDD 101
            +P+A S R+  RA  P+   P       + S    +PATP  +E  EG     E EE ++
Sbjct: 1520 DPSADSKRSS-RASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAEN 1578

Query: 102  GGETESRES---------YDAP-PTPS-GARL----------IPDFPVARSSSPGRKGSG 140
              E   + S          DAP P PS G RL          +P  P      PG +G  
Sbjct: 1579 QEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDR 1638

Query: 141  KRPAAAAAAGS-ASPRSWDEAEAQEEEEA-VGDGDGDGDADADGEDDPGHWD 190
            ++ A  +  G     +  D  E +E  E   GD     D   D E  PG  D
Sbjct: 1639 EKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRD 1690


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
            [Homo sapiens]
          Length = 2059

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 49/172 (28%), Positives = 66/172 (38%), Gaps = 31/172 (18%)

Query: 49   EPAAGSHRAGERAKGPSP--PGAKRRRLSESSALKQPATPTAAESSEG-----EGEEGDD 101
            +P+A S R+  RA  P+   P       + S    +PATP  +E  EG     E EE ++
Sbjct: 1579 DPSADSKRSS-RASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAEN 1637

Query: 102  GGETESRES---------YDAP-PTPS-GARL----------IPDFPVARSSSPGRKGSG 140
              E   + S          DAP P PS G RL          +P  P      PG +G  
Sbjct: 1638 QEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDR 1697

Query: 141  KRPAAAAAAGS-ASPRSWDEAEAQEEEEA-VGDGDGDGDADADGEDDPGHWD 190
            ++ A  +  G     +  D  E +E  E   GD     D   D E  PG  D
Sbjct: 1698 EKSATESTPGERGEEKPLDGQEHRERPEGETGDLGKREDVKGDRELRPGPRD 1749


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,620,988
Number of Sequences: 37866
Number of extensions: 1484442
Number of successful extensions: 11441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 644
Number of HSP's that attempted gapping in prelim test: 9584
Number of HSP's gapped (non-prelim): 2154
length of query: 665
length of database: 18,247,518
effective HSP length: 109
effective length of query: 556
effective length of database: 14,120,124
effective search space: 7850788944
effective search space used: 7850788944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.