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Search of human proteins with 18254464
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18254464 relaxin 3 preproprotein [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18254464 relaxin 3 preproprotein [Homo sapiens] 297 2e-81
gi|38569233 insulin-like 5 precursor [Homo sapiens] 49 1e-06
gi|5902052 relaxin 1 preproprotein [Homo sapiens] 37 0.004
gi|20143933 relaxin 2 isoform 1 preproprotein [Homo sapiens] 37 0.006
gi|20143935 relaxin 2 isoform 2 [Homo sapiens] 35 0.027
gi|38327535 insulin-like 3 precursor [Homo sapiens] 34 0.047
gi|239753791 PREDICTED: hypothetical protein [Homo sapiens] 30 0.88
gi|91105174 CD19 antigen [Homo sapiens] 29 1.1
gi|169164409 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|113414195 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|113413381 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|38569396 insulin-like 6 precursor [Homo sapiens] 28 2.6
gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens] 27 4.4
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens] 27 4.4
gi|7662074 zinc finger and BTB domain containing 5 [Homo sapiens] 27 4.4
gi|20336724 zinc finger protein 333 [Homo sapiens] 27 4.4
gi|4557671 proinsulin precursor [Homo sapiens] 27 5.7
gi|239757486 PREDICTED: hypothetical protein [Homo sapiens] 27 5.7
gi|239752001 PREDICTED: hypothetical protein XP_002348063 [Homo ... 27 5.7
gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo ... 27 5.7
gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens] 27 5.7
gi|38016947 complement component 5 preproprotein [Homo sapiens] 27 7.4
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 26 9.7
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 26 9.7
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 26 9.7
>gi|18254464 relaxin 3 preproprotein [Homo sapiens]
Length = 142
Score = 297 bits (760), Expect = 2e-81
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH 60
MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH
Sbjct: 1 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH 60
Query: 61 EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDV 120
EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDV
Sbjct: 61 EAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDV 120
Query: 121 LAGLSSSCCKWGCSKSEISSLC 142
LAGLSSSCCKWGCSKSEISSLC
Sbjct: 121 LAGLSSSCCKWGCSKSEISSLC 142
>gi|38569233 insulin-like 5 precursor [Homo sapiens]
Length = 135
Score = 49.3 bits (116), Expect = 1e-06
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 32 VRLCGREFIRAVIFTCGGSRWRRSDILAHEAMGDTFPDADADEDSLAGELDEAMGSSEWL 91
VRLCG E+IR VI+ C SRWRR + P A E + +L SE
Sbjct: 26 VRLCGLEYIRTVIYICASSRWRRHQ--------EGIPQAQQAETGNSFQLPHKREFSEEN 77
Query: 92 ALTKSPQAFYRGRPS-WQG---TPGVLRGSRDVLAG---LSSSCCKWGCSKSEISSLC 142
P+ G W G T + + + + L + CC GCS +++S+LC
Sbjct: 78 PAQNLPKVDASGEDRLWGGQMPTEELWKSKKHSVMSRQDLQTLCCTDGCSMTDLSALC 135
>gi|5902052 relaxin 1 preproprotein [Homo sapiens]
Length = 185
Score = 37.4 bits (85), Expect = 0.004
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 1 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH 60
M R L LL +L + A+ ++LCGRE +RA I CG S W + +
Sbjct: 1 MPRLFLFHLLEFCLLLNQFSRAVAAKWKDDVIKLCGRELVRAQIAICGMSTWSKRSLSQE 60
Query: 61 EAMGDTFPDAD 71
+A P A+
Sbjct: 61 DAPQTPRPVAE 71
>gi|20143933 relaxin 2 isoform 1 preproprotein [Homo sapiens]
Length = 185
Score = 37.0 bits (84), Expect = 0.006
Identities = 42/185 (22%), Positives = 64/185 (34%), Gaps = 43/185 (23%)
Query: 1 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH 60
M R LL V +L + ++LCGRE +RA I CG S W + +
Sbjct: 1 MPRLFFFHLLGVCLLLNQFSRAVADSWMEEVIKLCGRELVRAQIAICGMSTWSKRSLSQE 60
Query: 61 EAMGDTFPDADADEDSLAGELDEAMGSSEWLA-------LTKS------PQ--------- 98
+A P A+ + + + SE++A LT S PQ
Sbjct: 61 DAPQTPRPVAEIVPSFINKDTETINMMSEFVANLPQELKLTLSEMQPALPQLQQHVPVLK 120
Query: 99 ----------AFYRGRPS-----------WQGTPGVLRGSRDVLAGLSSSCCKWGCSKSE 137
R R S + G R R + + L++ CC GC+K
Sbjct: 121 DSSLLFEEFKKLIRNRQSEAADSSPSELKYLGLDTHSRKKRQLYSALANKCCHVGCTKRS 180
Query: 138 ISSLC 142
++ C
Sbjct: 181 LARFC 185
>gi|20143935 relaxin 2 isoform 2 [Homo sapiens]
Length = 117
Score = 34.7 bits (78), Expect = 0.027
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 1 MARYMLLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSDILAH 60
M R LL V +L + ++LCGRE +RA I CG S W + +
Sbjct: 1 MPRLFFFHLLGVCLLLNQFSRAVADSWMEEVIKLCGRELVRAQIAICGMSTWSKRSLSQE 60
Query: 61 EA 62
+A
Sbjct: 61 DA 62
>gi|38327535 insulin-like 3 precursor [Homo sapiens]
Length = 131
Score = 33.9 bits (76), Expect = 0.047
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 33 RLCGREFIRAVIFTCGGSRW 52
+LCG F+RA++ CGG RW
Sbjct: 32 KLCGHHFVRALVRVCGGPRW 51
>gi|239753791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 29.6 bits (65), Expect = 0.88
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 12/46 (26%)
Query: 94 TKSPQAFYRGRPS--WQGTPGVLRGSRDVLAGLSSSCCKWGCSKSE 137
T++ Q F G P W+GTPGVL G +SC GCS SE
Sbjct: 3 TRTGQQF-PGHPEFPWRGTPGVLGG---------TSCRTRGCSSSE 38
>gi|91105174 CD19 antigen [Homo sapiens]
Length = 556
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 68 PDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSW 107
P D+ SL+ +L A GS+ WL+ P + RG SW
Sbjct: 175 PPRDSLNQSLSQDLTMAPGSTLWLSCGVPPDSVSRGPLSW 214
>gi|169164409 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 62 AMGDTFPDADADEDSLAGELDEAMGSSEWLA 92
A GDT P A +DS + A GSS W++
Sbjct: 38 AQGDTSPGAGIGQDSRSTHARAAAGSSHWIS 68
>gi|113414195 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 62 AMGDTFPDADADEDSLAGELDEAMGSSEWLA 92
A GDT P A +DS + A GSS W++
Sbjct: 38 AQGDTSPGAGIGQDSRSTHARAAAGSSHWIS 68
>gi|113413381 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 62 AMGDTFPDADADEDSLAGELDEAMGSSEWLA 92
A GDT P A +DS + A GSS W++
Sbjct: 38 AQGDTSPGAGIGQDSRSTHARAAAGSSHWIS 68
>gi|38569396 insulin-like 6 precursor [Homo sapiens]
Length = 213
Score = 28.1 bits (61), Expect = 2.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 123 GLSSSCCKWGCSKSEISSLC 142
G S CC GC+K E+S C
Sbjct: 173 GYSEKCCLTGCTKEELSIAC 192
>gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens]
Length = 573
Score = 27.3 bits (59), Expect = 4.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 78 AGELDEAMGSSEWLALTKSPQA 99
AG +++MGS +W+AL K+ A
Sbjct: 159 AGSCNQSMGSEDWIALVKAAAA 180
>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
Length = 1017
Score = 27.3 bits (59), Expect = 4.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 78 AGELDEAMGSSEWLALTKSPQA 99
AG +++MGS +W+AL K+ A
Sbjct: 159 AGSCNQSMGSEDWIALVKAAAA 180
>gi|7662074 zinc finger and BTB domain containing 5 [Homo sapiens]
Length = 677
Score = 27.3 bits (59), Expect = 4.4
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 87 SSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDVLAGLSSSCCKWGCSKSEI 138
+S L + + +F G PS G P + R S DVL S CK S+ +
Sbjct: 558 TSSQLMMNGATSSFENGHPSQPGPPQLTRASADVL-----SKCKKALSEHNV 604
>gi|20336724 zinc finger protein 333 [Homo sapiens]
Length = 665
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 52 WRRSDILAHEAMGDTFPDADADEDSLAGELDEAMGSSEWLALTKSPQAFYR 102
W + D + EAM P A + E ++ EW+ L + ++ YR
Sbjct: 179 WLQEDKVEEEAMAPGLPTACSQEPVTFADVAVVFTPEEWVFLDSTQRSLYR 229
>gi|4557671 proinsulin precursor [Homo sapiens]
Length = 110
Score = 26.9 bits (58), Expect = 5.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 6 LLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCG 48
LL LLA+W G + AA LCG + A+ CG
Sbjct: 10 LLALLALW--------GPDPAAAFVNQHLCGSHLVEALYLVCG 44
>gi|239757486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 271
Score = 26.9 bits (58), Expect = 5.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 21 PGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRS 55
PG E R P R ++ R CGG RWRR+
Sbjct: 178 PGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRT 212
>gi|239752001 PREDICTED: hypothetical protein XP_002348063 [Homo
sapiens]
Length = 271
Score = 26.9 bits (58), Expect = 5.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 21 PGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRS 55
PG E R P R ++ R CGG RWRR+
Sbjct: 178 PGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRT 212
>gi|239746486 PREDICTED: hypothetical protein XP_002343772 [Homo
sapiens]
Length = 271
Score = 26.9 bits (58), Expect = 5.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 21 PGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRS 55
PG E R P R ++ R CGG RWRR+
Sbjct: 178 PGVEWRRRPDRQRGKNQDVCRFREMGCGGVRWRRT 212
>gi|109148522 insulin- insulin-like growth factor 2 [Homo sapiens]
Length = 200
Score = 26.9 bits (58), Expect = 5.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 6 LLLLLAVWVLTGELWPGAEARAAPYGVRLCGREFIRAVIFTCG 48
LL LLA+W G + AA LCG + A+ CG
Sbjct: 10 LLALLALW--------GPDPAAAFVNQHLCGSHLVEALYLVCG 44
>gi|38016947 complement component 5 preproprotein [Homo sapiens]
Length = 1676
Score = 26.6 bits (57), Expect = 7.4
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 68 PDADADEDSLAGELDEAMGSSEWLALTKSPQAFYRGRPSWQGTPGVLRGSRDVL 121
PDADA L+ A G W+AL A Y GV RG++ L
Sbjct: 577 PDADAYSPGQTVSLNMATGMDSWVALAAVDSAVY----------GVQRGAKKPL 620
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 19 LWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSD 56
L PG+ A P G RLC + +R V G+R R S+
Sbjct: 128 LQPGSPASPGP-GRRLCSLDVLRGVRLELAGARRRLSE 164
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 19 LWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSD 56
L PG+ A P G RLC + +R V G+R R S+
Sbjct: 128 LQPGSPASPGP-GRRLCSLDVLRGVRLELAGARRRLSE 164
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 26.2 bits (56), Expect = 9.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 19 LWPGAEARAAPYGVRLCGREFIRAVIFTCGGSRWRRSD 56
L PG+ A P G RLC + +R V G+R R S+
Sbjct: 128 LQPGSPASPGP-GRRLCSLDVLRGVRLELAGARRRLSE 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,982,789
Number of Sequences: 37866
Number of extensions: 264861
Number of successful extensions: 835
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 29
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.