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Search of human proteins with 18087849
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18087849 solute carrier family 35, member A4 [Homo sapiens]
(324 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18087849 solute carrier family 35, member A4 [Homo sapiens] 640 0.0
gi|5453621 solute carrier family 35 (CMP-sialic acid transporter... 94 1e-19
gi|6912668 solute carrier family 35 member 3A [Homo sapiens] 94 1e-19
gi|109948265 solute carrier family 35, member A2 isoform c [Homo... 88 9e-18
gi|5032211 solute carrier family 35, member A2 isoform a [Homo s... 88 9e-18
gi|8923657 solute carrier family 35, member A5 [Homo sapiens] 74 1e-13
gi|47827222 solute carrier family 35, member E4 [Homo sapiens] 39 0.005
gi|42794612 myeloma overexpressed [Homo sapiens] 31 1.3
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 30 2.2
gi|22902136 osterix [Homo sapiens] 30 2.9
gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo ... 30 2.9
gi|239740786 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|239740731 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|62912470 leucine-rich repeat-containing G protein-coupled rec... 30 3.8
gi|8923887 zinc finger protein 395 [Homo sapiens] 29 5.0
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens] 29 5.0
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 29 5.0
gi|8922867 hypothetical protein LOC55776 [Homo sapiens] 29 5.0
gi|71284432 WD repeat domain 40B [Homo sapiens] 29 5.0
gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens] 29 6.5
gi|64762489 solute carrier family 30 member 8 [Homo sapiens] 28 8.5
gi|169205117 PREDICTED: hypothetical protein [Homo sapiens] 28 8.5
>gi|18087849 solute carrier family 35, member A4 [Homo sapiens]
Length = 324
Score = 640 bits (1651), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MSVEDGGMPGLGRPRQARWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELT 60
MSVEDGGMPGLGRPRQARWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELT
Sbjct: 1 MSVEDGGMPGLGRPRQARWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELT 60
Query: 61 KLLLCAFSLLVGWQAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSN 120
KLLLCAFSLLVGWQAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSN
Sbjct: 61 KLLLCAFSLLVGWQAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSN 120
Query: 121 LKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPM 180
LKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPM
Sbjct: 121 LKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPM 180
Query: 181 PLHITPLGLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNLGLHAGGG 240
PLHITPLGLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNLGLHAGGG
Sbjct: 181 PLHITPLGLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNLGLHAGGG 240
Query: 241 SGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRL 300
SGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRL
Sbjct: 241 SGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRL 300
Query: 301 QLTAAFFLATLLIGLAMRLYYGSR 324
QLTAAFFLATLLIGLAMRLYYGSR
Sbjct: 301 QLTAAFFLATLLIGLAMRLYYGSR 324
>gi|5453621 solute carrier family 35 (CMP-sialic acid transporter),
member A1 [Homo sapiens]
Length = 337
Score = 94.4 bits (233), Expect = 1e-19
Identities = 80/312 (25%), Positives = 142/312 (45%), Gaps = 29/312 (9%)
Query: 23 LLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGWQAWPQ---- 78
L + T M + L + + ++AV +TE+ KLLL L + +
Sbjct: 17 LAVMTLMAAVYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGSLGRFKAS 76
Query: 79 ------GPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAVLYCL 132
G P ++ ++ +L+Y NN+ +D + YQV LKI TA+ L
Sbjct: 77 LRENVLGSP--KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVL 134
Query: 133 CLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITPLGLLLL 192
L LS Q +++ +L A G TL PA A + LG +
Sbjct: 135 MLNRTLSKLQWVSVFMLCA-------------GVTLVQWKPAQATKVVVEQNPLLGFGAI 181
Query: 193 ILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNL-GLHAGGGSG---PGLLEG 248
+ L SG + VY E ++K L ++N+ +Y G+++ L G++ G+ G G
Sbjct: 182 AIAVLCSGFAGVYFEKVLKSSDTSLWVRNIQMYLSGIIVTLAGVYLSDGAEIKEKGFFYG 241
Query: 249 FSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLTAAFFL 308
++ + V+ ++ GL S V+K+ +I + F + ++V++ + S +L LQ+T F L
Sbjct: 242 YTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFAL 301
Query: 309 ATLLIGLAMRLY 320
TLL+ +++ LY
Sbjct: 302 GTLLVCVSIYLY 313
>gi|6912668 solute carrier family 35 member 3A [Homo sapiens]
Length = 325
Score = 94.4 bits (233), Expect = 1e-19
Identities = 71/236 (30%), Positives = 124/236 (52%), Gaps = 16/236 (6%)
Query: 90 ALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAVLYCLCLRHRLSVRQGLALLLL 149
A+ + +Y NNL+ +D +TYQV LKI +TA+ L +L V Q L+L++L
Sbjct: 88 AIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQWLSLVIL 147
Query: 150 MAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITPLGLLLLILYCLISGLSSVYTELL 209
M A +Q P ++ +A S +GL+ ++ C SG + VY E +
Sbjct: 148 MTGVAF-----VQWPSDSQLDSKELSAGSQF------VGLMAVLTACFSSGFAGVYFEKI 196
Query: 210 MKRQRLPLALQNLFLYTFGVLLNL-GLHAGGG---SGPGLLEGFSGWAALVVLSQALNGL 265
+K + + ++N+ L FG + L G++ G S G +G++ +VV+ QAL GL
Sbjct: 197 LKETKQSVWIRNIQLGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGL 256
Query: 266 LMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLR-LQLTAAFFLATLLIGLAMRLY 320
+++AV+K+ +I + F S S++++ ++S L+ T+ FFL +L+ A LY
Sbjct: 257 VIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAILVITATFLY 312
>gi|109948265 solute carrier family 35, member A2 isoform c [Homo
sapiens]
Length = 393
Score = 88.2 bits (217), Expect = 9e-18
Identities = 77/236 (32%), Positives = 108/236 (45%), Gaps = 18/236 (7%)
Query: 90 ALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAVLYCLCLRHRLSVRQGLALLLL 149
A+ +L+Y NNL + +T+QV LKI +TA+ L L LS Q +LLLL
Sbjct: 116 AVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLL 175
Query: 150 MAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITP-LGLLLLILYCLISGLSSVYTEL 208
A A A P PL P GL ++ CL SG + VY E
Sbjct: 176 FTGVAIVQA-------------QQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEK 222
Query: 209 LMKRQRLPLALQNLFLYTFGVLLNL-GLHAGGGSGPGLLEGFSGWAALV---VLSQALNG 264
++K + L+NL L FG L L GL G+ F G+ V VL+QA G
Sbjct: 223 ILKGSSGSVWLRNLQLGLFGTALGLVGLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGG 282
Query: 265 LLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLTAAFFLATLLIGLAMRLY 320
LL++ V+K+ +I + F S S+V++ V S L + F L L+ A+ LY
Sbjct: 283 LLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLY 338
>gi|5032211 solute carrier family 35, member A2 isoform a [Homo
sapiens]
Length = 396
Score = 88.2 bits (217), Expect = 9e-18
Identities = 77/236 (32%), Positives = 108/236 (45%), Gaps = 18/236 (7%)
Query: 90 ALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAVLYCLCLRHRLSVRQGLALLLL 149
A+ +L+Y NNL + +T+QV LKI +TA+ L L LS Q +LLLL
Sbjct: 116 AVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLL 175
Query: 150 MAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITP-LGLLLLILYCLISGLSSVYTEL 208
A A A P PL P GL ++ CL SG + VY E
Sbjct: 176 FTGVAIVQA-------------QQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEK 222
Query: 209 LMKRQRLPLALQNLFLYTFGVLLNL-GLHAGGGSGPGLLEGFSGWAALV---VLSQALNG 264
++K + L+NL L FG L L GL G+ F G+ V VL+QA G
Sbjct: 223 ILKGSSGSVWLRNLQLGLFGTALGLVGLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGG 282
Query: 265 LLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLTAAFFLATLLIGLAMRLY 320
LL++ V+K+ +I + F S S+V++ V S L + F L L+ A+ LY
Sbjct: 283 LLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLY 338
>gi|8923657 solute carrier family 35, member A5 [Homo sapiens]
Length = 424
Score = 74.3 bits (181), Expect = 1e-13
Identities = 74/334 (22%), Positives = 141/334 (42%), Gaps = 52/334 (15%)
Query: 43 DGRVPFRPSSAVLLTELTKLLLCAFS----LLVGWQAWPQGPPPWRQAAPF---ALSALL 95
+ + + P++ + +EL KL+ C + Q+ W++ + F ++ A L
Sbjct: 44 ENKYDYLPTTVNVCSELVKLVFCVLVSFCVIKKDHQSRNLKYASWKEFSDFMKWSIPAFL 103
Query: 96 YGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGAC 155
Y +N +V Y+ Y+ P+ + SN I +TA+L+ + L+ RL+ Q +LL L +
Sbjct: 104 YFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRRLNWIQWASLLTLFLSIVA 163
Query: 156 YAAGGLQVPGNTL-----------PSPPPAAAASPMPL---------------------- 182
AG + N PS S P
Sbjct: 164 LTAGTKTLQHNLAGRGFHHDAFFSPSNSCLLFRSECPRKDNCTAKEWTFPEAKWNTTARV 223
Query: 183 --HIT-PLGLLLLILYCLISGLSSVYTELLMKRQRL---PLALQNLFLYTFGVLLN---L 233
HI +G +L+I+ C IS ++++Y E ++K + +QN LY FG+L N L
Sbjct: 224 FSHIRLGMGHVLIIVQCFISSMANIYNEKILKEGNQLTESIFIQNSKLYFFGILFNGLTL 283
Query: 234 GLHAGGG---SGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVN 290
GL G G S ++ ++ A GL ++ ++K ++ + + + V+
Sbjct: 284 GLQRSNRDQIKNCGFFYGHSAFSVALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVII 343
Query: 291 AVLSAVLLRLQLTAAFFLATLLIGLAMRLYYGSR 324
+S ++ + + FFL + L++ +Y S+
Sbjct: 344 TTVSVLVFDFRPSLEFFLEAPSVLLSIFIYNASK 377
>gi|47827222 solute carrier family 35, member E4 [Homo sapiens]
Length = 350
Score = 39.3 bits (90), Expect = 0.005
Identities = 76/318 (23%), Positives = 116/318 (36%), Gaps = 44/318 (13%)
Query: 12 GRPRQARWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLV 71
GR R A L+ LL+ A + + H GR LLL A +LV
Sbjct: 45 GRARVAMAALVWLLAGASMSSLNKWIFTVHGFGR---------------PLLLSALHMLV 89
Query: 72 GWQAWPQG---PPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAV 128
A +G P P L +L +G + R + Q+++ T
Sbjct: 90 AALACHRGARRPMPGGTRCRVLLLSLTFGTSMACGNVGLRAVPLDLAQLVTTTTPLFTLA 149
Query: 129 LYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITPLG 188
L L L R Q A+ L AC AG + P P G
Sbjct: 150 LSALLLGRRHHPLQLAAMGPLCLGAACSLAGEFRTP---------------------PTG 188
Query: 189 LLLLILYCLISGLSSVYTELLMKRQRLPLA--LQNLFLYTFGVLLNLGLHAGGGSGPGLL 246
L+ + GL SV L++ +RL L L +F +L L G P
Sbjct: 189 CGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLEAGVAPPPT 248
Query: 247 EGFSGWAALVVLS---QALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLT 303
G S A ++LS L L +++ S++T + + ++V N +LS +L +L+
Sbjct: 249 AGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRLS 308
Query: 304 AAFFLATLLIGLAMRLYY 321
A ++ L M LY+
Sbjct: 309 ALSYVGIALTLSGMFLYH 326
>gi|42794612 myeloma overexpressed [Homo sapiens]
Length = 313
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 160 GLQVPGNTLPS--PPPAAAASPMPLHITPLGLLLLILYC 196
G++ G P+ PPP + ASP+ LH L LL++IL C
Sbjct: 275 GVRRTGQVGPTMHPPPVSGASPLLLHHLLLLLLIIILTC 313
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 30.4 bits (67), Expect = 2.2
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 139 SVRQGLALLLLMAAGACYAAGGLQVPG--------NTLPSPPPAAAASP 179
S R LLLL+ GAC AAG PG +P PPA A P
Sbjct: 30 SPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEP 78
>gi|22902136 osterix [Homo sapiens]
Length = 431
Score = 30.0 bits (66), Expect = 2.9
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 21/96 (21%)
Query: 157 AAGGLQVPGNTLPSP--------PPAAAASPMPLHITPLGLLLLILYCLISGLSSVYTEL 208
+ GL P + P+P PP + + P P GLL+ + L SVYT L
Sbjct: 70 STNGLLSPAGSPPAPTSGYANDYPPFSHSFPGPTGTQDPGLLVPKGHSSSDCLPSVYTSL 129
Query: 209 LMKRQRLPLALQNLFLYTFGVLLNLGLHAGGGSGPG 244
M + +G G+HAG GPG
Sbjct: 130 DMT-------------HPYGSWYKAGIHAGISPGPG 152
>gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo
sapiens]
Length = 138
Score = 30.0 bits (66), Expect = 2.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 159 GGLQVPGN----TLPSPPPAAAASPMPLHITPLGLLLLIL 194
G L +PG+ + P+PPPA+ + P L + PLG L ++
Sbjct: 47 GSLGLPGSGHGSSGPAPPPASPSHPHRLPLQPLGFLSFLV 86
>gi|239740786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 30.0 bits (66), Expect = 2.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 159 GGLQVPGN----TLPSPPPAAAASPMPLHITPLGLLLLIL 194
G L +PG+ + P+PPPA+ + P L + PLG L ++
Sbjct: 47 GSLGLPGSGHGSSGPAPPPASPSHPHRLPLQPLGFLSFLV 86
>gi|239740731 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 30.0 bits (66), Expect = 2.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 159 GGLQVPGN----TLPSPPPAAAASPMPLHITPLGLLLLIL 194
G L +PG+ + P+PPPA+ + P L + PLG L ++
Sbjct: 47 GSLGLPGSGHGSSGPAPPPASPSHPHRLPLQPLGFLSFLV 86
>gi|62912470 leucine-rich repeat-containing G protein-coupled
receptor 6 isoform 1 [Homo sapiens]
Length = 967
Score = 29.6 bits (65), Expect = 3.8
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 145 ALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITPLGLLLLILYCLISGLSSV 204
AL L A A AGG P P P A P P H G ++L C GLS+V
Sbjct: 9 ALWLCAALCASRRAGGA-------PQPGPGPTACPAPCHCQEDG-IMLSADCSELGLSAV 60
Query: 205 YTELLMKRQRLPLALQNL 222
+L L L++ NL
Sbjct: 61 PGDLDPLTAYLDLSMNNL 78
>gi|8923887 zinc finger protein 395 [Homo sapiens]
Length = 513
Score = 29.3 bits (64), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 151 AAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITP 186
AA A AA G VPG P P + + +PL P
Sbjct: 333 AAAAAAAAAGTPVPGTPTSEPAPTPSMTGLPLSALP 368
>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 5.0
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 16/126 (12%)
Query: 77 PQGPPPWRQAAPF---------ALSALLYGANNNLVIYLQRYMDPSTYQVLSN--LKIGS 125
P+ P PWR P L L L + QR +Y++ +N K
Sbjct: 123 PRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQR----GSYRICANGFYKQSR 178
Query: 126 TAVLYCLCLRHRLSVRQGLALLLLMAA-GACYAAGGLQVPGNTLPSPPPAAAASPMPLHI 184
+ C L R + G + A GAC G ++P PSPPP A++ +
Sbjct: 179 KTPVCCRVLLVRARGKPGCSPRRGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRL 238
Query: 185 TPLGLL 190
P G L
Sbjct: 239 PPGGRL 244
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 29.3 bits (64), Expect = 5.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 159 GGLQVPGNTLPSPPPAAAASPMPLH-----ITPLG 188
GG + PG +P+PP A+ +P+P + PLG
Sbjct: 191 GGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLG 225
>gi|8922867 hypothetical protein LOC55776 [Homo sapiens]
Length = 183
Score = 29.3 bits (64), Expect = 5.0
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 241 SGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSI-----TRLFVVSC---SLVVNAV 292
+ PG L+ F W ++A GL+ A GS+ T + + SC S + N
Sbjct: 43 AAPGWLKRFLVWKPRPASARAQPGLVQEAAQPQGSTSETPWNTAIPLPSCWDQSFLTNIT 102
Query: 293 LSAVLLRLQLTAAFF-----LATLLIGLAMRLYYGSR 324
VLL L L F LA ++ L +Y G+R
Sbjct: 103 FLKVLLWLVLLGLFVELEFGLAYFVLSLFYWMYVGTR 139
>gi|71284432 WD repeat domain 40B [Homo sapiens]
Length = 463
Score = 29.3 bits (64), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 208 LLMKRQRLPLALQNLFLYTFGVLLNLGLHAGGGSGPGLLEGFSG 251
LL+KRQR P +++ Y L + GG GP L+GF G
Sbjct: 37 LLLKRQRRPATYRSMAHY-------LKVREVGGWGPARLQGFDG 73
>gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens]
Length = 248
Score = 28.9 bits (63), Expect = 6.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 282 VVSCSLVVNAVLSAVLLRLQLTAAFFLATLLIGLA 316
+++C+ +V AV+ AV R + + LA +LIG A
Sbjct: 154 LIACAFLVGAVVFAVRSRRSMNLHYLLAVILIGAA 188
>gi|64762489 solute carrier family 30 member 8 [Homo sapiens]
Length = 369
Score = 28.5 bits (62), Expect = 8.5
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 29/118 (24%)
Query: 41 HVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGWQAWPQGPPP-------WRQAAPFA--L 91
H+ G + +A LL +LT LL FSL W PP W +A L
Sbjct: 93 HIAGSLAVVTDAAHLLIDLTSFLLSLFSL------WLSSKPPSKRLTFGWHRAEILGALL 146
Query: 92 SALLYGANNNLVIYL--QRYMDPSTYQVLSNL-----------KIGSTAVLYCLCLRH 136
S L +++YL +R + P YQ+ + + I T VL+ CL H
Sbjct: 147 SILCIWVVTGVLVYLACERLLYPD-YQIQATVMIIVSSCAVAANIVLTVVLHQRCLGH 203
>gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 28.5 bits (62), Expect = 8.5
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 16/126 (12%)
Query: 77 PQGPPPWRQAAPF---------ALSALLYGANNNLVIYLQRYMDPSTYQVLSN--LKIGS 125
P+ P PWR P L L L + QR +Y++ +N K
Sbjct: 123 PRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQR----GSYRICANGFYKQSR 178
Query: 126 TAVLYCLCLRHRLSVRQGLALLLLMAA-GACYAAGGLQVPGNTLPSPPPAAAASPMPLHI 184
+ C L R + G + A GAC G ++P PSPPP A++ +
Sbjct: 179 KTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRL 238
Query: 185 TPLGLL 190
P G L
Sbjct: 239 PPGGRL 244
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,755,083
Number of Sequences: 37866
Number of extensions: 593139
Number of successful extensions: 4489
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4453
Number of HSP's gapped (non-prelim): 30
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.