Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 18087821
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18087821 CDKN2A interacting protein N-terminal like [Homo
sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18087821 CDKN2A interacting protein N-terminal like [Homo sap... 235 5e-63
gi|8923040 CDKN2A interacting protein [Homo sapiens] 87 4e-18
gi|150378520 zinc finger protein 594 [Homo sapiens] 27 2.7
gi|239047795 pleckstrin homology domain containing, family A mem... 27 4.5
gi|149158702 major histocompatibility complex, class I, F isofor... 27 4.5
gi|149158698 major histocompatibility complex, class I, F isofor... 27 4.5
gi|149158700 major histocompatibility complex, class I, F isofor... 26 5.9
gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isofo... 26 5.9
gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isofor... 26 5.9
gi|219555704 leucine rich repeat containing 27 isoform c [Homo s... 26 5.9
gi|219555702 leucine rich repeat containing 27 isoform b [Homo s... 26 5.9
gi|219555700 leucine rich repeat containing 27 isoform a [Homo s... 26 5.9
gi|55741567 leucine rich repeat containing 27 isoform a [Homo sa... 26 5.9
gi|95089461 discs large homolog 5 [Homo sapiens] 26 7.7
gi|63003897 transcription factor NRF [Homo sapiens] 26 7.7
gi|91984775 regulator of telomere elongation helicase 1 isoform ... 26 7.7
gi|7706541 regulator of telomere elongation helicase 1 isoform 1... 26 7.7
>gi|18087821 CDKN2A interacting protein N-terminal like [Homo
sapiens]
Length = 116
Score = 235 bits (600), Expect = 5e-63
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MVGGEAAAAVEELVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLPDYRDPPDGSGR 60
MVGGEAAAAVEELVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLPDYRDPPDGSGR
Sbjct: 1 MVGGEAAAAVEELVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLPDYRDPPDGSGR 60
Query: 61 LDQLLSLSMVWANHLFLGCSYNKDLLDKVMEMADGIEVEDLPQFTTRSELMKKHQS 116
LDQLLSLSMVWANHLFLGCSYNKDLLDKVMEMADGIEVEDLPQFTTRSELMKKHQS
Sbjct: 61 LDQLLSLSMVWANHLFLGCSYNKDLLDKVMEMADGIEVEDLPQFTTRSELMKKHQS 116
>gi|8923040 CDKN2A interacting protein [Homo sapiens]
Length = 580
Score = 86.7 bits (213), Expect = 4e-18
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 18/124 (14%)
Query: 7 AAAVEELVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLPDYRDPPDGSG------- 59
A V E +S + A + E R E++K W+ R +F+LR+ D P G+
Sbjct: 2 AQEVSEYLSQNPRVAAWVEALRCDGETDKHWRHRRDFLLRNAGDLA-PAGGAASASTDEA 60
Query: 60 ----------RLDQLLSLSMVWANHLFLGCSYNKDLLDKVMEMADGIEVEDLPQFTTRSE 109
+L QL+S SM WANH+FLGC Y + ++DK++ MA+GI+V D P +TTR E
Sbjct: 61 ADAESGTRNRQLQQLISFSMAWANHVFLGCRYPQKVMDKILSMAEGIKVTDAPTYTTRDE 120
Query: 110 LMKK 113
L+ K
Sbjct: 121 LVAK 124
>gi|150378520 zinc finger protein 594 [Homo sapiens]
Length = 807
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 6 AAAAVEELVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLP 49
A AA E+L + Q + E S K W + ++ +RHLP
Sbjct: 17 ARAASEKLQRQITQECELVETSNSEDRLLKHWVSPLKDAMRHLP 60
>gi|239047795 pleckstrin homology domain containing, family A member
7 [Homo sapiens]
Length = 1121
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 18 RQAADFAEQFRSYSESEKQWKARMEFILRHLPDYRDPP 55
R D ++ R+ E++ Q ++ +E + R + YRD P
Sbjct: 703 RVLQDLEDKIRALKENKDQLESVLEVLHRQMEQYRDQP 740
>gi|149158702 major histocompatibility complex, class I, F isoform 1
precursor [Homo sapiens]
Length = 442
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 6 AAAAVEELVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLPDYR------DPP 55
AA V ++ +A ++AE+FR+Y E E +E + R+L + + DPP
Sbjct: 156 AADTVAQITQRFYEAEEYAEEFRTYLEGE-----CLELLRRYLENGKETLQRADPP 206
>gi|149158698 major histocompatibility complex, class I, F isoform 2
precursor [Homo sapiens]
Length = 346
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 6 AAAAVEELVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLPDYR------DPP 55
AA V ++ +A ++AE+FR+Y E E +E + R+L + + DPP
Sbjct: 156 AADTVAQITQRFYEAEEYAEEFRTYLEGE-----CLELLRRYLENGKETLQRADPP 206
>gi|149158700 major histocompatibility complex, class I, F isoform 3
precursor [Homo sapiens]
Length = 254
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 6 AAAAVEELVSGVRQAADFAEQFRSYSESE 34
AA V ++ +A ++AE+FR+Y E E
Sbjct: 156 AADTVAQITQRFYEAEEYAEEFRTYLEGE 184
>gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isoform
b [Homo sapiens]
Length = 1173
Score = 26.2 bits (56), Expect = 5.9
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 35/113 (30%)
Query: 13 LVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLPDYRDPP----------------- 55
L+S Q + E + S E W A ++ + PD + P
Sbjct: 565 LISASLQGPEMYEIYTSSKEDRNAWMAHIQRAVESCPDEEEGPFSLPEEERKVVEARATR 624
Query: 56 --DGSGRL---DQLLSLSMVWANHLFLGCSYNKDLLDKVMEMADGIEVEDLPQ 103
D RL DQL++ S++ ++L EMA+ +EDLPQ
Sbjct: 625 LRDFQERLSMKDQLIAQSLLEKQQIYL-------------EMAEMGGLEDLPQ 664
>gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isoform a
[Homo sapiens]
Length = 1015
Score = 26.2 bits (56), Expect = 5.9
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 35/113 (30%)
Query: 13 LVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLPDYRDPP----------------- 55
L+S Q + E + S E W A ++ + PD + P
Sbjct: 407 LISASLQGPEMYEIYTSSKEDRNAWMAHIQRAVESCPDEEEGPFSLPEEERKVVEARATR 466
Query: 56 --DGSGRL---DQLLSLSMVWANHLFLGCSYNKDLLDKVMEMADGIEVEDLPQ 103
D RL DQL++ S++ ++L EMA+ +EDLPQ
Sbjct: 467 LRDFQERLSMKDQLIAQSLLEKQQIYL-------------EMAEMGGLEDLPQ 506
>gi|219555704 leucine rich repeat containing 27 isoform c [Homo
sapiens]
Length = 383
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 14 VSGVRQAADFAEQFRSYSESEKQWKARMEFI 44
+S +R++AD +E + S E + WK R E +
Sbjct: 240 LSELRKSADSSENWPSEEEIRRFWKLRQEIV 270
>gi|219555702 leucine rich repeat containing 27 isoform b [Homo
sapiens]
Length = 383
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 14 VSGVRQAADFAEQFRSYSESEKQWKARMEFI 44
+S +R++AD +E + S E + WK R E +
Sbjct: 240 LSELRKSADSSENWPSEEEIRRFWKLRQEIV 270
>gi|219555700 leucine rich repeat containing 27 isoform a [Homo
sapiens]
Length = 530
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 14 VSGVRQAADFAEQFRSYSESEKQWKARMEFI 44
+S +R++AD +E + S E + WK R E +
Sbjct: 240 LSELRKSADSSENWPSEEEIRRFWKLRQEIV 270
>gi|55741567 leucine rich repeat containing 27 isoform a [Homo
sapiens]
Length = 530
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 14 VSGVRQAADFAEQFRSYSESEKQWKARMEFI 44
+S +R++AD +E + S E + WK R E +
Sbjct: 240 LSELRKSADSSENWPSEEEIRRFWKLRQEIV 270
>gi|95089461 discs large homolog 5 [Homo sapiens]
Length = 1919
Score = 25.8 bits (55), Expect = 7.7
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Query: 5 EAAAAVEELVSGVRQAADFAEQFRSYSESEKQWKARMEFILRHLPDYRDPPDGSGRLDQL 64
E AV EL +R D +Q S K+ K +ME L +R S +
Sbjct: 550 ERDRAVSELAEALRSLDDTRKQKNDVSRELKELKEQMESQLEKEARFRQLMAHSSHDSAI 609
Query: 65 LSLSMVWANHL--FLGCSYNKDLLDKVMEMADGIEVEDLP 102
+ SM W + F + + DL +MA+G+ P
Sbjct: 610 DTDSMEWETEVVEFERETEDIDLKALGFDMAEGVNEPCFP 649
>gi|63003897 transcription factor NRF [Homo sapiens]
Length = 690
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Query: 86 LDKVMEMADGIEVEDLPQF----TTRSELMKKHQS 116
++K+++MA+GI++ ++P + + S+ K+H S
Sbjct: 1 MEKILQMAEGIDIGEMPSYDLVLSKPSKGQKRHLS 35
>gi|91984775 regulator of telomere elongation helicase 1 isoform 2
[Homo sapiens]
Length = 1300
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 27 FRSYSESEKQWKARMEFILRHLPDYRDPPDGSGRLDQLLSLSMVWANHLFLGCSYNK 83
F+ Y ++ +E + + + + P G+G+ LL ++ W HL G S K
Sbjct: 15 FQPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLRDGISARK 71
>gi|7706541 regulator of telomere elongation helicase 1 isoform 1
[Homo sapiens]
Length = 1219
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 27 FRSYSESEKQWKARMEFILRHLPDYRDPPDGSGRLDQLLSLSMVWANHLFLGCSYNK 83
F+ Y ++ +E + + + + P G+G+ LL ++ W HL G S K
Sbjct: 15 FQPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLRDGISARK 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,446,064
Number of Sequences: 37866
Number of extensions: 168084
Number of successful extensions: 401
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 17
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.