Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 17865797
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17865797 TM2 domain containing 2 isoform a [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17865797 TM2 domain containing 2 isoform a [Homo sapiens] 457 e-129
gi|66932897 TM2 domain containing 2 isoform b [Homo sapiens] 306 7e-84
gi|66932895 TM2 domain containing 2 isoform b [Homo sapiens] 306 7e-84
gi|66932893 TM2 domain containing 2 isoform b [Homo sapiens] 306 7e-84
gi|91807119 TM2 domain containing 3 isoform b [Homo sapiens] 65 4e-11
gi|91807117 TM2 domain containing 3 isoform a [Homo sapiens] 65 4e-11
gi|14042945 beta-amyloid binding protein precursor [Homo sapiens] 50 2e-06
gi|108773804 Fraser syndrome 1 [Homo sapiens] 31 0.69
gi|110349717 titin isoform novex-2 [Homo sapiens] 29 3.4
gi|110349713 titin isoform novex-1 [Homo sapiens] 29 3.4
gi|110349715 titin isoform N2-B [Homo sapiens] 29 3.4
gi|94680985 cyclin J-like [Homo sapiens] 29 3.4
gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo sapi... 28 4.5
gi|239757051 PREDICTED: hypothetical protein [Homo sapiens] 28 5.8
gi|239751563 PREDICTED: hypothetical protein XP_002347903 [Homo ... 28 5.8
gi|239746077 PREDICTED: hypothetical protein XP_002343640 [Homo ... 28 5.8
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 28 5.8
gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 28 5.8
gi|19923084 polycystin-1L1 [Homo sapiens] 28 5.8
gi|167466252 transmembrane protease, serine 11A isoform 2 [Homo ... 28 7.6
gi|167466250 transmembrane protease, serine 11A isoform 1 [Homo ... 28 7.6
gi|117606347 F-box protein 43 isoform a [Homo sapiens] 28 7.6
gi|117606351 F-box protein 43 isoform b [Homo sapiens] 28 7.6
gi|30089935 transmembrane protein 132A isoform a [Homo sapiens] 28 7.6
gi|116063556 G-protein coupled receptor 88 [Homo sapiens] 28 7.6
gi|30089937 transmembrane protein 132A isoform b [Homo sapiens] 28 7.6
gi|14591924 Sec23 homolog B [Homo sapiens] 27 10.0
gi|14591926 Sec23 homolog B [Homo sapiens] 27 10.0
gi|14591928 Sec23 homolog B [Homo sapiens] 27 10.0
gi|93102401 hypothetical protein LOC84326 isoform g [Homo sapiens] 27 10.0
>gi|17865797 TM2 domain containing 2 isoform a [Homo sapiens]
Length = 214
Score = 457 bits (1176), Expect = e-129
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MVLGGCPVSYLLLCGQAALLLGNLLLLHCVSRSHSQNATAEPELTSAGAAQPEGPGGAAS 60
MVLGGCPVSYLLLCGQAALLLGNLLLLHCVSRSHSQNATAEPELTSAGAAQPEGPGGAAS
Sbjct: 1 MVLGGCPVSYLLLCGQAALLLGNLLLLHCVSRSHSQNATAEPELTSAGAAQPEGPGGAAS 60
Query: 61 WEYGDPHSPVILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQ 120
WEYGDPHSPVILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQ
Sbjct: 61 WEYGDPHSPVILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQ 120
Query: 121 CHALDGIECASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKL 180
CHALDGIECASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKL
Sbjct: 121 CHALDGIECASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKL 180
Query: 181 LTLGGLGIWWFVDLILLITGGLMPSDGSNWCTVY 214
LTLGGLGIWWFVDLILLITGGLMPSDGSNWCTVY
Sbjct: 181 LTLGGLGIWWFVDLILLITGGLMPSDGSNWCTVY 214
>gi|66932897 TM2 domain containing 2 isoform b [Homo sapiens]
Length = 171
Score = 306 bits (785), Expect = 7e-84
Identities = 140/145 (96%), Positives = 143/145 (98%)
Query: 70 VILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIEC 129
++L +Y PDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIEC
Sbjct: 27 ILLVNYRPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIEC 86
Query: 130 ASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLLTLGGLGIW 189
ASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLLTLGGLGIW
Sbjct: 87 ASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLLTLGGLGIW 146
Query: 190 WFVDLILLITGGLMPSDGSNWCTVY 214
WFVDLILLITGGLMPSDGSNWCTVY
Sbjct: 147 WFVDLILLITGGLMPSDGSNWCTVY 171
>gi|66932895 TM2 domain containing 2 isoform b [Homo sapiens]
Length = 171
Score = 306 bits (785), Expect = 7e-84
Identities = 140/145 (96%), Positives = 143/145 (98%)
Query: 70 VILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIEC 129
++L +Y PDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIEC
Sbjct: 27 ILLVNYRPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIEC 86
Query: 130 ASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLLTLGGLGIW 189
ASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLLTLGGLGIW
Sbjct: 87 ASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLLTLGGLGIW 146
Query: 190 WFVDLILLITGGLMPSDGSNWCTVY 214
WFVDLILLITGGLMPSDGSNWCTVY
Sbjct: 147 WFVDLILLITGGLMPSDGSNWCTVY 171
>gi|66932893 TM2 domain containing 2 isoform b [Homo sapiens]
Length = 171
Score = 306 bits (785), Expect = 7e-84
Identities = 140/145 (96%), Positives = 143/145 (98%)
Query: 70 VILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIEC 129
++L +Y PDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIEC
Sbjct: 27 ILLVNYRPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIEC 86
Query: 130 ASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLLTLGGLGIW 189
ASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLLTLGGLGIW
Sbjct: 87 ASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKLLTLGGLGIW 146
Query: 190 WFVDLILLITGGLMPSDGSNWCTVY 214
WFVDLILLITGGLMPSDGSNWCTVY
Sbjct: 147 WFVDLILLITGGLMPSDGSNWCTVY 171
>gi|91807119 TM2 domain containing 3 isoform b [Homo sapiens]
Length = 221
Score = 65.1 bits (157), Expect = 4e-11
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 121 CHALDGIECASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKL 180
C D + C RTF + C G+ + T L S LG FG DRF LG +GKL
Sbjct: 132 CTVRDHVHCLGNRTFPKMLY-CNWTGGYKWSTALALSITLGGFGADRFYLGQWREGLGKL 190
Query: 181 LTLGGLGIWWFVDLILLITGGLMPSDGS 208
+ GGLGIW +D++L+ G + P+DGS
Sbjct: 191 FSFGGLGIWTLIDVLLIGVGYVGPADGS 218
>gi|91807117 TM2 domain containing 3 isoform a [Homo sapiens]
Length = 247
Score = 65.1 bits (157), Expect = 4e-11
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 121 CHALDGIECASPRTFLRENKPCIKYTGHYFITTLLYSFFLGCFGVDRFCLGHTGTAVGKL 180
C D + C RTF + C G+ + T L S LG FG DRF LG +GKL
Sbjct: 158 CTVRDHVHCLGNRTFPKMLY-CNWTGGYKWSTALALSITLGGFGADRFYLGQWREGLGKL 216
Query: 181 LTLGGLGIWWFVDLILLITGGLMPSDGS 208
+ GGLGIW +D++L+ G + P+DGS
Sbjct: 217 FSFGGLGIWTLIDVLLIGVGYVGPADGS 244
>gi|14042945 beta-amyloid binding protein precursor [Homo sapiens]
Length = 207
Score = 49.7 bits (117), Expect = 2e-06
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
Query: 54 GPGGAASWEYGDPHSPVILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSD 113
GP GA + G S + C L C+DP + +AT C + S
Sbjct: 31 GPWGAVATSAGGEES--LKCEDLKVGQYICKDP--KINDATQEP---VNCTNYTAHV-SC 82
Query: 114 VEHTSVQCHALDGIECASPRTFLRENKP--CIKYTGHYFITTLLYSFFLGCFGVDRFCLG 171
++ C G E + KP C G+ + + S FLG G DRF LG
Sbjct: 83 FPAPNITCKDSSGNETHFTGNEVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLG 142
Query: 172 HTGTAVGKLLTLGGLGIWWFVDLILLITGGLMPSDGSNWCTVY 214
+ + K T+G GI +D IL+ + PSDGS++ Y
Sbjct: 143 YPALGLLKFCTVGFCGIGSLIDFILISMQIVGPSDGSSYIIDY 185
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 31.2 bits (69), Expect = 0.69
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 12/112 (10%)
Query: 67 HSPVILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHALDG 126
H + CS PD C+DP + N G G + G + S G
Sbjct: 422 HPDCLTCSQSPDHCDLCQDPTKLLQNGWCVHSCGLGFYQAGSLCLACQPQCST---CTSG 478
Query: 127 IECAS--PRTFLRENKPCIKYTGHYFI-----TTLLYSFFLGCFG-VDRFCL 170
+EC+S P +R + C+ G F + + GC+G ++ CL
Sbjct: 479 LECSSCQPPLLMRHGQ-CVPTCGDGFYQDRHSCAVCHESCAGCWGPTEKHCL 529
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 28.9 bits (63), Expect = 3.4
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 64 GDPHSPVILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHA 123
GD HS +IL + L DE + G S Y + G+ + D E S +
Sbjct: 3701 GDDHSLIILFTKLEDEGEYTCMASNDYGKTICS---AYLKINSKGEGHKDTETESAVAKS 3757
Query: 124 LDGIECASPRTFLRENKP 141
L+ + P FL+E KP
Sbjct: 3758 LEKLGGPCPPHFLKELKP 3775
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 28.9 bits (63), Expect = 3.4
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 64 GDPHSPVILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHA 123
GD HS +IL + L DE + G S Y + G+ + D E S +
Sbjct: 3634 GDDHSLIILFTKLEDEGEYTCMASNDYGKTICS---AYLKINSKGEGHKDTETESAVAKS 3690
Query: 124 LDGIECASPRTFLRENKP 141
L+ + P FL+E KP
Sbjct: 3691 LEKLGGPCPPHFLKELKP 3708
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 28.9 bits (63), Expect = 3.4
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 64 GDPHSPVILCSYLPDEFIECEDPVDHVGNATASQELGYGCLKFGGQAYSDVEHTSVQCHA 123
GD HS +IL + L DE + G S Y + G+ + D E S +
Sbjct: 3509 GDDHSLIILFTKLEDEGEYTCMASNDYGKTICS---AYLKINSKGEGHKDTETESAVAKS 3565
Query: 124 LDGIECASPRTFLRENKP 141
L+ + P FL+E KP
Sbjct: 3566 LEKLGGPCPPHFLKELKP 3583
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 28.9 bits (63), Expect = 3.4
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 132 PRTFLRENKPCIKYTGHYFITTLL-----YSF-----FLGCFGVDRFCL 170
P T R+ K C+K HYF+ L Y F C G R CL
Sbjct: 218 PTTCPRKTKECLKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICL 266
>gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo
sapiens]
Length = 450
Score = 28.5 bits (62), Expect = 4.5
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 18 ALLLGNLLLLHCV-SRSHSQNATAEPELTSAGAAQPEGPGGAASWEYGDPHSPVILC 73
ALLLG+L CV R + PEL+ + P+ P G A G H P LC
Sbjct: 338 ALLLGHLARGLCVRERGEPCGQSRPPELSPS----PQSPEGGAGPPAGPCHEPRCLC 390
>gi|239757051 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 28.1 bits (61), Expect = 5.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 22 GNLLLLHCVSRSHSQNATAEPELTSAGAAQPEGPGGAASWEYG 64
G + L+ RS A EPE +G PGG+ W G
Sbjct: 4 GTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAG 46
>gi|239751563 PREDICTED: hypothetical protein XP_002347903 [Homo
sapiens]
Length = 121
Score = 28.1 bits (61), Expect = 5.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 22 GNLLLLHCVSRSHSQNATAEPELTSAGAAQPEGPGGAASWEYG 64
G + L+ RS A EPE +G PGG+ W G
Sbjct: 4 GTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAG 46
>gi|239746077 PREDICTED: hypothetical protein XP_002343640 [Homo
sapiens]
Length = 121
Score = 28.1 bits (61), Expect = 5.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 22 GNLLLLHCVSRSHSQNATAEPELTSAGAAQPEGPGGAASWEYG 64
G + L+ RS A EPE +G PGG+ W G
Sbjct: 4 GTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAG 46
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 28.1 bits (61), Expect = 5.8
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 41 EPELTSAGAAQP---EGPGGAASWEYGDPHSPVILCSYLPDEFIECEDP--VDHVGNATA 95
EP+ GA P GP ++ W P SP+ CS ++ C + A
Sbjct: 329 EPDPQHPGAWLPLLSNGPHASSLWSLFAPSSPIPRCSGESEQLRACSQAPCPPEQPDPRA 388
Query: 96 SQELGYGCLKFGGQAYSDVEHTSVQCHALDGIECASPRTF 135
Q + +F GQ Y T VQ + C PR F
Sbjct: 389 LQCAAFNSQEFMGQLYQWEPFTEVQGSQRCELNC-RPRGF 427
>gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo
sapiens]
Length = 877
Score = 28.1 bits (61), Expect = 5.8
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 41 EPELTSAGAAQP---EGPGGAASWEYGDPHSPVILCSYLPDEFIECEDP--VDHVGNATA 95
EP+ GA P GP ++ W P SP+ CS ++ C + A
Sbjct: 329 EPDPQHPGAWLPLLSNGPHASSLWSLFAPSSPIPRCSGESEQLRACSQAPCPPEQPDPRA 388
Query: 96 SQELGYGCLKFGGQAYSDVEHTSVQCHALDGIECASPRTF 135
Q + +F GQ Y T VQ + C PR F
Sbjct: 389 LQCAAFNSQEFMGQLYQWEPFTEVQGSQRCELNC-RPRGF 427
>gi|19923084 polycystin-1L1 [Homo sapiens]
Length = 2849
Score = 28.1 bits (61), Expect = 5.8
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 12 LLCGQAALLLGNLLLLHCVSRSHSQNATAEPELTSAGAAQPEGPGGAASW 61
LL A LL LL +S+ +A EP G AQ E P G SW
Sbjct: 2001 LLASPGAQLLS---LLFRLSKEAPGSARVEPHSPLRGGAQTEAPHGPNSW 2047
>gi|167466252 transmembrane protease, serine 11A isoform 2 [Homo
sapiens]
Length = 418
Score = 27.7 bits (60), Expect = 7.6
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 100 GYGCLKFGGQAYSDVEHTSVQCHALDGIECASPRTFLRENKPCIKYTGHYFITTLLYSFF 159
G+G L +GG++ +D+ V+ + D C P+ + + KP + G+
Sbjct: 310 GFGALYYGGESQNDLREARVKIISDD--VCKQPQVYGNDIKPGMFCAGY----------- 356
Query: 160 LGCFGVDRFCLGHTGTAVGKLLTLGGLGIWWFVDLI 195
G+ C G +G G L+T W+ + ++
Sbjct: 357 --MEGIYDACRGDSG---GPLVTRDLKDTWYLIGIV 387
>gi|167466250 transmembrane protease, serine 11A isoform 1 [Homo
sapiens]
Length = 421
Score = 27.7 bits (60), Expect = 7.6
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 100 GYGCLKFGGQAYSDVEHTSVQCHALDGIECASPRTFLRENKPCIKYTGHYFITTLLYSFF 159
G+G L +GG++ +D+ V+ + D C P+ + + KP + G+
Sbjct: 313 GFGALYYGGESQNDLREARVKIISDD--VCKQPQVYGNDIKPGMFCAGY----------- 359
Query: 160 LGCFGVDRFCLGHTGTAVGKLLTLGGLGIWWFVDLI 195
G+ C G +G G L+T W+ + ++
Sbjct: 360 --MEGIYDACRGDSG---GPLVTRDLKDTWYLIGIV 390
>gi|117606347 F-box protein 43 isoform a [Homo sapiens]
Length = 674
Score = 27.7 bits (60), Expect = 7.6
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 35 SQNATAEPELTSAGAAQPEGPGGAASWEYGDPHSPVILCSYLPDEFIECEDPVDHVGNAT 94
SQN++ E ++ + P A+ + + SP++ + +E C
Sbjct: 137 SQNSSLESSISQVINLEKNIPSSASGFSRANNFSPLVTSTLKTEEVTSC----------- 185
Query: 95 ASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIECASP 132
SQ+L L F Q S ++ + C +L +EC SP
Sbjct: 186 -SQKLR---LNFSQQKTSTIDDSKDDC-SLFEVECISP 218
>gi|117606351 F-box protein 43 isoform b [Homo sapiens]
Length = 708
Score = 27.7 bits (60), Expect = 7.6
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 35 SQNATAEPELTSAGAAQPEGPGGAASWEYGDPHSPVILCSYLPDEFIECEDPVDHVGNAT 94
SQN++ E ++ + P A+ + + SP++ + +E C
Sbjct: 171 SQNSSLESSISQVINLEKNIPSSASGFSRANNFSPLVTSTLKTEEVTSC----------- 219
Query: 95 ASQELGYGCLKFGGQAYSDVEHTSVQCHALDGIECASP 132
SQ+L L F Q S ++ + C +L +EC SP
Sbjct: 220 -SQKLR---LNFSQQKTSTIDDSKDDC-SLFEVECISP 252
>gi|30089935 transmembrane protein 132A isoform a [Homo sapiens]
Length = 1024
Score = 27.7 bits (60), Expect = 7.6
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 27 LHCVSRSHSQNATAEPELTSAGAAQPEGPGGAASWEYGDP 66
L S SQ +T EL EGPGG S E DP
Sbjct: 188 LELPSHWFSQASTTRAELAYTLEPAAEGPGGCGSGEENDP 227
>gi|116063556 G-protein coupled receptor 88 [Homo sapiens]
Length = 384
Score = 27.7 bits (60), Expect = 7.6
Identities = 26/83 (31%), Positives = 27/83 (32%), Gaps = 19/83 (22%)
Query: 8 VSYLLLCGQAALLLGNLLLLHC-----------VSR--------SHSQNATAEPELTSAG 48
V Y L AALL LLLHC V R H A G
Sbjct: 190 VHYPALLAAAALLAQTALLLHCYLGIVRRVRVSVKRVSVLNFHLLHQLPGCAAAAAAFPG 249
Query: 49 AAQPEGPGGAASWEYGDPHSPVI 71
A GPGGAA P P +
Sbjct: 250 AQHAPGPGGAAHPAQAQPLPPAL 272
>gi|30089937 transmembrane protein 132A isoform b [Homo sapiens]
Length = 1023
Score = 27.7 bits (60), Expect = 7.6
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 27 LHCVSRSHSQNATAEPELTSAGAAQPEGPGGAASWEYGDP 66
L S SQ +T EL EGPGG S E DP
Sbjct: 188 LELPSHWFSQASTTRAELAYTLEPAAEGPGGCGSGEENDP 227
>gi|14591924 Sec23 homolog B [Homo sapiens]
Length = 767
Score = 27.3 bits (59), Expect = 10.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 117 TSVQCHALDGIECASPRTFLRENKPCIKYTGHYFI 151
T+ H +D CA +T L E K C TG Y +
Sbjct: 340 TAANGHCIDIYACALDQTGLLEMKCCANLTGGYMV 374
>gi|14591926 Sec23 homolog B [Homo sapiens]
Length = 767
Score = 27.3 bits (59), Expect = 10.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 117 TSVQCHALDGIECASPRTFLRENKPCIKYTGHYFI 151
T+ H +D CA +T L E K C TG Y +
Sbjct: 340 TAANGHCIDIYACALDQTGLLEMKCCANLTGGYMV 374
>gi|14591928 Sec23 homolog B [Homo sapiens]
Length = 767
Score = 27.3 bits (59), Expect = 10.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 117 TSVQCHALDGIECASPRTFLRENKPCIKYTGHYFI 151
T+ H +D CA +T L E K C TG Y +
Sbjct: 340 TAANGHCIDIYACALDQTGLLEMKCCANLTGGYMV 374
>gi|93102401 hypothetical protein LOC84326 isoform g [Homo sapiens]
Length = 185
Score = 27.3 bits (59), Expect = 10.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 19 LLLGNLLLLHCVSRSHSQ--NATAEPELTSAGAAQPEGPG 56
+L +L LL C++ +H T EP + ++G + P GPG
Sbjct: 97 ILPQSLDLLLCINMAHVSPLRCTEEPRMGASGHSPPGGPG 136
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,624,710
Number of Sequences: 37866
Number of extensions: 460061
Number of successful extensions: 1212
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 35
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.