Guide to the Human Genome
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Name: TM2D3 Sequence: fasta or formatted (221aa) NCBI GI: 91807119
Description:

TM2 domain containing 3 isoform b

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [247aa] TM2 domain containing 3 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          9           1
 C cysteine            7.7         17           1
 D aspartate           4.5         10           1
 E glutamate           2.3          5           1
 F phenylalanine       5.4         12           1
 G glycine            10.4         23           2
 H histidine           0.9          2           1
 I isoleucine          4.5         10           2
 K lysine              3.6          8           1
 L leucine            10.9         24           2
 M methionine          2.3          5           1
 N asparagine          3.6          8           1
 P proline             5.4         12           2
 Q glutamine           2.7          6           1
 R arginine            5.0         11           1
 S serine              6.8         15           1
 T threonine           7.7         17           2
 V valine              5.9         13           1
 W tryptophan          2.3          5           1
 Y tyrosine            4.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TM2 domain containing 3 isoform b 
TM2D3                 0.969   TM2 domain containing 3 isoform a 
TM2D1                 0.115   beta-amyloid binding protein precursor 
TM2D2                 0.088   TM2 domain containing 2 isoform b 
TM2D2                 0.088   TM2 domain containing 2 isoform b 
TM2D2                 0.088   TM2 domain containing 2 isoform b 
TM2D2                 0.088   TM2 domain containing 2 isoform a 
GRN                   0.020   granulin precursor 
NELL2                 0.015   NEL-like protein 2 isoform d 
NELL2                 0.015   NEL-like protein 2 isoform c 
NELL2                 0.015   NEL-like protein 2 isoform b precursor 
NELL2                 0.015   NEL-like protein 2 isoform a 
NELL2                 0.015   NEL-like protein 2 isoform b precursor 
EPHA2                 0.009   ephrin receptor EphA2 
TNFRSF10C             0.009   tumor necrosis factor receptor superfamily, member 1...
INSRR                 0.007   insulin receptor-related receptor precursor 
OR6C4                 0.007   olfactory receptor, family 6, subfamily C, member 4 ...
SNED1                 0.007   6720455I24Rik homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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