Guide to the Human Genome
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Name: SEC23B Sequence: fasta or formatted (767aa) NCBI GI: 14591926
Description:

Sec23 homolog B

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [767aa] Sec23 homolog B
alt mRNA [767aa] Sec23 homolog B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         53           3
 C cysteine            2.2         17           2
 D aspartate           5.1         39           2
 E glutamate           5.1         39           2
 F phenylalanine       5.2         40           2
 G glycine             6.3         48           2
 H histidine           2.3         18           2
 I isoleucine          5.0         38           1
 K lysine              3.8         29           2
 L leucine            10.6         81           2
 M methionine          3.1         24           1
 N asparagine          3.5         27           2
 P proline             6.5         50           2
 Q glutamine           6.9         53           2
 R arginine            5.7         44           2
 S serine              6.4         49           3
 T threonine           5.5         42           2
 V valine              5.6         43           2
 W tryptophan          1.3         10           1
 Y tyrosine            3.0         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sec23 homolog B 
SEC23B                1.000   Sec23 homolog B 
SEC23B                1.000   Sec23 homolog B 
SEC23A                0.862   SEC23-related protein A 
SEC24B                0.038   SEC24 (S. cerevisiae) homolog B isoform b 
SEC24B                0.038   SEC24 (S. cerevisiae) homolog B isoform a 
SEC24A                0.032   SEC24 related gene family, member A 
SEC24C                0.032   SEC24-related protein C 
SEC24C                0.032   SEC24-related protein C 
SEC24D                0.025   Sec24-related protein D 
HUWE1                 0.005   HECT, UBA and WWE domain containing 1 
EGF                   0.003   epidermal growth factor (beta-urogastrone) 
VWA5B2                0.003   von Willebrand factor A domain containing 5B2 [Homo...
GCNT2                 0.003   glucosaminyl (N-acetyl) transferase 2, I-branching en...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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