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Search of human proteins with 17738287
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17738287 secretory carrier membrane protein 4 [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17738287 secretory carrier membrane protein 4 [Homo sapiens] 492 e-139
gi|20373183 secretory carrier membrane protein 5 [Homo sapiens] 300 9e-82
gi|116256358 secretory carrier membrane protein 1 [Homo sapiens] 214 4e-56
gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo... 214 5e-56
gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo... 214 5e-56
gi|5730031 secretory carrier membrane protein 2 [Homo sapiens] 209 2e-54
gi|145864459 diacylglycerol O-acyltransferase 1 [Homo sapiens] 32 0.45
gi|52856424 olfactory receptor, family 5, subfamily H, member 1 ... 31 1.0
gi|188219575 putative homeodomain transcription factor 2 isoform... 30 1.7
gi|188219573 putative homeodomain transcription factor 2 isoform... 30 1.7
gi|188219571 putative homeodomain transcription factor 2 isoform... 30 1.7
gi|188219569 putative homeodomain transcription factor 2 isoform... 30 1.7
gi|188219565 putative homeodomain transcription factor 2 isoform... 30 1.7
gi|53933276 olfactory receptor, family 5, subfamily H, member 14... 30 1.7
gi|239750823 PREDICTED: hypothetical LOC645212 [Homo sapiens] 29 3.8
gi|239745185 PREDICTED: hypothetical protein [Homo sapiens] 29 3.8
gi|53828732 olfactory receptor, family 5, subfamily H, member 6 ... 29 3.8
gi|31542845 gap junction protein, alpha 9, 59kDa [Homo sapiens] 28 5.0
gi|53933284 olfactory receptor, family 5, subfamily H, member 15... 28 5.0
gi|41349499 proteolipid protein 1 isoform 1 [Homo sapiens] 28 6.5
gi|192449447 proteolipid protein 1 isoform 1 [Homo sapiens] 28 6.5
gi|57977305 G protein-coupled receptor 151 [Homo sapiens] 28 6.5
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 28 8.5
>gi|17738287 secretory carrier membrane protein 4 [Homo sapiens]
Length = 229
Score = 492 bits (1266), Expect = e-139
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MSEKENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLA 60
MSEKENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLA
Sbjct: 1 MSEKENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLA 60
Query: 61 WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV 120
WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV
Sbjct: 61 WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV 120
Query: 121 IQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAG 180
IQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAG
Sbjct: 121 IQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAG 180
Query: 181 GSFQKAQTEWNTGTWRNPPSREAQYNNFSGNSLPEYPTVPSYPGSGQWP 229
GSFQKAQTEWNTGTWRNPPSREAQYNNFSGNSLPEYPTVPSYPGSGQWP
Sbjct: 181 GSFQKAQTEWNTGTWRNPPSREAQYNNFSGNSLPEYPTVPSYPGSGQWP 229
>gi|20373183 secretory carrier membrane protein 5 [Homo sapiens]
Length = 235
Score = 300 bits (767), Expect = 9e-82
Identities = 134/234 (57%), Positives = 167/234 (71%), Gaps = 7/234 (2%)
Query: 1 MSEKENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLA 60
M+EK NNFPPLPKFIP+KPCFYQ+F +IP +H + KR+Y LWM TL VNL+ CLA
Sbjct: 1 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLA 60
Query: 61 WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV 120
W IGGG TNFGLAF+WL+LFTPC YVCWFRP+YKAF+ DSSF+FMAFFF F AQ V+++
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 121 IQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAG 180
IQA+G GWG CGW++ I FF + G+AVVML+P +MF+V A IA+ VH+ YRG+G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 181 GSFQKAQTEWNTGTWRNPPSREAQYNNFSG-------NSLPEYPTVPSYPGSGQ 227
GSF KAQ EW TG W+NP ++A N G +Y P+Y S +
Sbjct: 181 GSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSATPNYTYSNE 234
>gi|116256358 secretory carrier membrane protein 1 [Homo sapiens]
Length = 338
Score = 214 bits (546), Expect = 4e-56
Identities = 96/204 (47%), Positives = 134/204 (65%), Gaps = 1/204 (0%)
Query: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWW- 62
++NN+PPLP PV PCFYQ+FS +IPVE Q VK +Y LWMF+ TL +N+ CLAW+
Sbjct: 116 RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFC 175
Query: 63 IGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQ 122
+ +FGL+ +W LLFTPC +VCW+RP+Y AFR+DSSF F FFF++ QF + V+Q
Sbjct: 176 VDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQ 235
Query: 123 AIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGGS 182
A GF WG CGW+S++ + ++M++ A +F+ SA + + KVH +YR G S
Sbjct: 236 AAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGAS 295
Query: 183 FQKAQTEWNTGTWRNPPSREAQYN 206
F+KAQ E+ TG N + A N
Sbjct: 296 FEKAQQEFATGVMSNKTVQTAAAN 319
>gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo
sapiens]
Length = 321
Score = 214 bits (545), Expect = 5e-56
Identities = 102/208 (49%), Positives = 140/208 (67%), Gaps = 1/208 (0%)
Query: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLA-WW 62
++NN+PPLP F PV+PCF+Q+ S EIP E Q V +Y LWM L +N +ACLA +
Sbjct: 105 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFC 164
Query: 63 IGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQ 122
+ +G FGL+ +W+LLFTPC +VCW+RP+YKAFR+DSSFNF FFFIF Q VL V+Q
Sbjct: 165 VETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVLFVLQ 224
Query: 123 AIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGGS 182
AIG GWG GW+SA+ + + +V+MLL A++F+ A + + + ++H +YR G S
Sbjct: 225 AIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTGAS 284
Query: 183 FQKAQTEWNTGTWRNPPSREAQYNNFSG 210
FQKAQ E+ G + NP R A N +G
Sbjct: 285 FQKAQQEFAAGVFSNPAVRTAAANAAAG 312
>gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo
sapiens]
Length = 347
Score = 214 bits (545), Expect = 5e-56
Identities = 102/208 (49%), Positives = 140/208 (67%), Gaps = 1/208 (0%)
Query: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLA-WW 62
++NN+PPLP F PV+PCF+Q+ S EIP E Q V +Y LWM L +N +ACLA +
Sbjct: 131 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFC 190
Query: 63 IGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQ 122
+ +G FGL+ +W+LLFTPC +VCW+RP+YKAFR+DSSFNF FFFIF Q VL V+Q
Sbjct: 191 VETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVLFVLQ 250
Query: 123 AIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGGS 182
AIG GWG GW+SA+ + + +V+MLL A++F+ A + + + ++H +YR G S
Sbjct: 251 AIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTGAS 310
Query: 183 FQKAQTEWNTGTWRNPPSREAQYNNFSG 210
FQKAQ E+ G + NP R A N +G
Sbjct: 311 FQKAQQEFAAGVFSNPAVRTAAANAAAG 338
>gi|5730031 secretory carrier membrane protein 2 [Homo sapiens]
Length = 329
Score = 209 bits (531), Expect = 2e-54
Identities = 97/215 (45%), Positives = 143/215 (66%), Gaps = 8/215 (3%)
Query: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWI 63
++NN+PPLP + PVKPCFYQ+FS EIP ++Q + K +Y LWM + TL +NL+ACLAW+
Sbjct: 116 RQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFS 175
Query: 64 GGGS-GTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQ 122
G S G +FGL+ +W L+FTPC ++CW+RP+YKAFR+D+SF+F FFF+F Q + +IQ
Sbjct: 176 GNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQ 235
Query: 123 AIGFSGWGACGWLSAIGFF-QYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGG 181
+G G G GW++A+ +S +V+M++ A F++ A + + +VH +YR G
Sbjct: 236 LVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGA 295
Query: 182 SFQKAQTEWNTG-----TWRNPPSREAQYNNFSGN 211
SFQ+AQ E++ G T+ S AQ F GN
Sbjct: 296 SFQQAQEEFSQGIFSSRTFHRAASSAAQ-GAFQGN 329
>gi|145864459 diacylglycerol O-acyltransferase 1 [Homo sapiens]
Length = 488
Score = 32.0 bits (71), Expect = 0.45
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 33 HQVLVK---RIYRLWMFYCATLGVNLIACLAWWIGGGSGTNFGLAFVWLLL 80
H+ LV R++RLW F G+ LAW++G N+G A VWL L
Sbjct: 415 HEYLVSVPLRMFRLWAF----TGMMAQIPLAWFVGRFFQGNYGNAAVWLSL 461
>gi|52856424 olfactory receptor, family 5, subfamily H, member 1
[Homo sapiens]
Length = 313
Score = 30.8 bits (68), Expect = 1.0
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 14/130 (10%)
Query: 6 NNFPPLPKFIPVKPCFYQNFSDEIPVEHQ--VLVKRIYRLWMFYCATL--------GVNL 55
NNF K I + C Q FS I V + +L Y ++ C L G+ +
Sbjct: 83 NNFLAKSKMISLSECKIQFFSFAISVTTECFLLATMAYDRYVAICKPLLYPAIMTNGLCI 142
Query: 56 IACLAWWIGGGSGTNFGLAFVWLLLFTPCGYV----CWFRPVYKAFRADSSFNFMAFFFI 111
+ ++GG F++ L F V C P+ K DSS NF+ F
Sbjct: 143 RLLILSYVGGILHALIHEGFLFRLTFCNSNIVHHIYCDTIPLSKISCTDSSINFLMVFIF 202
Query: 112 FGAQFVLTVI 121
G+ V +++
Sbjct: 203 SGSIQVFSIV 212
>gi|188219575 putative homeodomain transcription factor 2 isoform 4
[Homo sapiens]
Length = 352
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 187 QTEWNTGTWRNPPSREAQ 204
+T WNTGT RN PS++ Q
Sbjct: 269 ETAWNTGTLRNGPSKDTQ 286
>gi|188219573 putative homeodomain transcription factor 2 isoform 3
[Homo sapiens]
Length = 356
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 187 QTEWNTGTWRNPPSREAQ 204
+T WNTGT RN PS++ Q
Sbjct: 273 ETAWNTGTLRNGPSKDTQ 290
>gi|188219571 putative homeodomain transcription factor 2 isoform 2
[Homo sapiens]
Length = 747
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 187 QTEWNTGTWRNPPSREAQ 204
+T WNTGT RN PS++ Q
Sbjct: 269 ETAWNTGTLRNGPSKDTQ 286
>gi|188219569 putative homeodomain transcription factor 2 isoform 1
[Homo sapiens]
Length = 751
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 187 QTEWNTGTWRNPPSREAQ 204
+T WNTGT RN PS++ Q
Sbjct: 273 ETAWNTGTLRNGPSKDTQ 290
>gi|188219565 putative homeodomain transcription factor 2 isoform 2
[Homo sapiens]
Length = 747
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 187 QTEWNTGTWRNPPSREAQ 204
+T WNTGT RN PS++ Q
Sbjct: 269 ETAWNTGTLRNGPSKDTQ 286
>gi|53933276 olfactory receptor, family 5, subfamily H, member 14
[Homo sapiens]
Length = 310
Score = 30.0 bits (66), Expect = 1.7
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 14/128 (10%)
Query: 7 NFPPLPKFIPVKPCFYQNFSDEIPVEHQ--VLVKRIYRLWMFYCATL--------GVNLI 56
NF K I + C Q FS I V + +L Y ++ C L G+ +
Sbjct: 84 NFLAKSKMISLSECKIQLFSFAISVTTECFLLATMAYDRYVAICKPLLYPAIMTNGLCIR 143
Query: 57 ACLAWWIGGGSGTNFGLAFVWLLLFTPCGYV----CWFRPVYKAFRADSSFNFMAFFFIF 112
+ ++GG F++ L F + C P+ K DSS NF+ F
Sbjct: 144 LLILSYVGGLLHALIHEGFLFRLTFCNSNIIQHFYCDIIPLLKISYTDSSINFLMVFIFA 203
Query: 113 GAQFVLTV 120
G+ V T+
Sbjct: 204 GSIQVFTI 211
>gi|239750823 PREDICTED: hypothetical LOC645212 [Homo sapiens]
Length = 149
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 173 HRIYRGAGGSFQKAQTEWNT---GTWRNPPSREAQYNNFSGNSLPEY 216
HR R AG FQ T+ +T G R PP + N S L E+
Sbjct: 29 HRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEW 75
>gi|239745185 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 173 HRIYRGAGGSFQKAQTEWNT---GTWRNPPSREAQYNNFSGNSLPEY 216
HR R AG FQ T+ +T G R PP + N S L E+
Sbjct: 29 HRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEW 75
>gi|53828732 olfactory receptor, family 5, subfamily H, member 6
[Homo sapiens]
Length = 325
Score = 28.9 bits (63), Expect = 3.8
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 14/128 (10%)
Query: 7 NFPPLPKFIPVKPCFYQNFS--DEIPVEHQVLVKRIYRLWMFYCATLGVNLIA----CLA 60
NF K I + C Q FS + E +L Y ++ C L +I C+
Sbjct: 100 NFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQ 159
Query: 61 W----WIGGGSGTNFGLAFVWLLLFTPCGYV----CWFRPVYKAFRADSSFNFMAFFFIF 112
+IGG AF + L F + C P+ K DSS NF+ F
Sbjct: 160 LLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFA 219
Query: 113 GAQFVLTV 120
G+ V T+
Sbjct: 220 GSVQVFTI 227
>gi|31542845 gap junction protein, alpha 9, 59kDa [Homo sapiens]
Length = 515
Score = 28.5 bits (62), Expect = 5.0
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 138 IGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVH-----RIYRGAGGSFQKAQTEWNT 192
I F P + LL M S++ + + I+++ +I RG G + K + E N
Sbjct: 198 IDCFVSRPTEKTIFLL--FMQSIATISLFLNILEIFHLGFKKIKRGLWGKY-KLKKEHNE 254
Query: 193 GTWRNPPSREAQYNNFSGNSLPEYPTVPSY 222
A+Y + S NSL P+ P Y
Sbjct: 255 FHANKAKQNVAKYQSTSANSLKRLPSAPDY 284
>gi|53933284 olfactory receptor, family 5, subfamily H, member 15
[Homo sapiens]
Length = 313
Score = 28.5 bits (62), Expect = 5.0
Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 6 NNFPPLPKFIPVKPCFYQNFSDEIPVEHQ--VLVKRIYRLWMFYCATL--------GVNL 55
NNF K I + C Q FS I V + +L Y ++ C L G+ +
Sbjct: 83 NNFLAKSKMISLSECKIQFFSIAIGVTTECFLLATMAYDRYVAICKPLLYPAIMTNGLCI 142
Query: 56 IACLAWWIGGGSGTNFGLAFVWLLLFTPCGYV----CWFRPVYKAFRADSSFNFMAFFFI 111
+ +I G F++ L F V C P+ K DSS NF+ F
Sbjct: 143 RLLILSYIAGILHALIHEGFLFRLTFCNSNIVHHIYCDTIPLSKISCTDSSINFLMVFIF 202
Query: 112 FGAQFVLTVI 121
G+ V +++
Sbjct: 203 SGSIQVFSIV 212
>gi|41349499 proteolipid protein 1 isoform 1 [Homo sapiens]
Length = 277
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 58 CLAWWIGGGS---GTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAF 108
CL W+G G + L VWLL+F C PVY F ++ +AF
Sbjct: 141 CLGKWLGHPDKFVGITYALTVVWLLVF-----ACSAVPVYIYFNTWTTCQSIAF 189
>gi|192449447 proteolipid protein 1 isoform 1 [Homo sapiens]
Length = 277
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 58 CLAWWIGGGS---GTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAF 108
CL W+G G + L VWLL+F C PVY F ++ +AF
Sbjct: 141 CLGKWLGHPDKFVGITYALTVVWLLVF-----ACSAVPVYIYFNTWTTCQSIAF 189
>gi|57977305 G protein-coupled receptor 151 [Homo sapiens]
Length = 419
Score = 28.1 bits (61), Expect = 6.5
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 129 WGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGGSFQKAQT 188
W A W+ + +P + L +MFS+S+A I ++ G G
Sbjct: 267 WVAWLWVWHLKAAGPAPPQGFIALSQVLMFSISSANPLIFLVMSEEFREGLKG------- 319
Query: 189 EWNTGTWRNPPSREAQYNNFSGNS--LPEYPTVPSYPGS 225
W + PP+ +GNS LP+ P P S
Sbjct: 320 VWKWMITKKPPTVSESQETPAGNSEGLPDKVPSPESPAS 358
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 27.7 bits (60), Expect = 8.5
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 39 RIYRLWMFYCATLGVNLIACLA-------WWIGGGSGTNFGLAFVWLLLFTPCG-YVCW 89
RI+ L +F C TL + + CL W + +GT A + L CG YVCW
Sbjct: 632 RIFLLIVFMCITLLIASLICLTLPVFAGRWLMSFWTGT----AKIHELYTAACGLYVCW 686
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.141 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,547,002
Number of Sequences: 37866
Number of extensions: 390911
Number of successful extensions: 1175
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 23
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.