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Search of human proteins with 171906593
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|171906593 branched chain ketoacid dehydrogenase kinase
isoform b [Homo sapiens]
(365 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|171906593 branched chain ketoacid dehydrogenase kinase isofor... 738 0.0
gi|171906589 branched chain ketoacid dehydrogenase kinase isofor... 738 0.0
gi|19923736 pyruvate dehydrogenase kinase 2 [Homo sapiens] 127 2e-29
gi|4505689 pyruvate dehydrogenase kinase 1 [Homo sapiens] 124 2e-28
gi|4505693 pyruvate dehydrogenase kinase 4 [Homo sapiens] 119 4e-27
gi|215422338 pyruvate dehydrogenase kinase 3 isoform 1 [Homo sap... 115 6e-26
gi|4885545 pyruvate dehydrogenase kinase 3 isoform 2 [Homo sapiens] 115 6e-26
gi|169165066 PREDICTED: hypothetical protein [Homo sapiens] 33 0.53
gi|169165483 PREDICTED: hypothetical protein [Homo sapiens] 32 0.69
gi|169165882 PREDICTED: hypothetical protein [Homo sapiens] 32 0.69
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 32 0.90
gi|4505941 DNA directed RNA polymerase II polypeptide B [Homo sa... 32 1.2
gi|18921093 transient receptor potential cation channel, subfami... 31 2.0
gi|148596957 myosin binding protein C, cardiac [Homo sapiens] 30 2.6
gi|66773086 SH3-binding kinase 1 [Homo sapiens] 29 7.6
gi|9506611 guanine nucleotide binding protein-like 3 (nucleolar)... 29 7.6
gi|148922920 DENN/MADD domain containing 4B [Homo sapiens] 29 7.6
gi|169169855 PREDICTED: similar to hCG34808 [Homo sapiens] 28 9.9
gi|169168879 PREDICTED: similar to hCG34808 [Homo sapiens] 28 9.9
gi|169169326 PREDICTED: similar to hCG34808 [Homo sapiens] 28 9.9
gi|8923009 non-SMC element 4 homolog A [Homo sapiens] 28 9.9
>gi|171906593 branched chain ketoacid dehydrogenase kinase isoform b
[Homo sapiens]
Length = 365
Score = 738 bits (1904), Expect = 0.0
Identities = 365/365 (100%), Positives = 365/365 (100%)
Query: 1 MILASVLRSGPGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAID 60
MILASVLRSGPGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAID
Sbjct: 1 MILASVLRSGPGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAID 60
Query: 61 AAAEKPSVRLTPTMMLYAGRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNP 120
AAAEKPSVRLTPTMMLYAGRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNP
Sbjct: 61 AAAEKPSVRLTPTMMLYAGRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNP 120
Query: 121 TILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI 180
TILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI
Sbjct: 121 TILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI 180
Query: 181 EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARR 240
EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARR
Sbjct: 181 EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARR 240
Query: 241 LCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVI 300
LCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVI
Sbjct: 241 LCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVI 300
Query: 301 TIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQS 360
TIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQS
Sbjct: 301 TIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQS 360
Query: 361 GPMHG 365
GPMHG
Sbjct: 361 GPMHG 365
>gi|171906589 branched chain ketoacid dehydrogenase kinase isoform a
[Homo sapiens]
Length = 412
Score = 738 bits (1904), Expect = 0.0
Identities = 365/365 (100%), Positives = 365/365 (100%)
Query: 1 MILASVLRSGPGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAID 60
MILASVLRSGPGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAID
Sbjct: 1 MILASVLRSGPGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAID 60
Query: 61 AAAEKPSVRLTPTMMLYAGRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNP 120
AAAEKPSVRLTPTMMLYAGRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNP
Sbjct: 61 AAAEKPSVRLTPTMMLYAGRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNP 120
Query: 121 TILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI 180
TILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI
Sbjct: 121 TILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI 180
Query: 181 EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARR 240
EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARR
Sbjct: 181 EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARR 240
Query: 241 LCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVI 300
LCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVI
Sbjct: 241 LCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVI 300
Query: 301 TIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQS 360
TIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQS
Sbjct: 301 TIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGAQS 360
Query: 361 GPMHG 365
GPMHG
Sbjct: 361 GPMHG 365
>gi|19923736 pyruvate dehydrogenase kinase 2 [Homo sapiens]
Length = 407
Score = 127 bits (318), Expect = 2e-29
Identities = 83/279 (29%), Positives = 145/279 (51%), Gaps = 20/279 (7%)
Query: 90 SARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADE- 148
S +L+QELPVR+A+ +K LP + P++ V Y+++ + +F KD D
Sbjct: 49 SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHR 107
Query: 149 --AQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKL----VRYFLDKTLTSRLGIRM 202
+Q+ + + + H DVV +A+G+ E + D+ + ++YFLD+ SR+ IRM
Sbjct: 108 TLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM 167
Query: 203 LATHHLALHEDK-----PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRI--- 254
L H + + P +G I + ++++ D A+ LC+ Y +P + I
Sbjct: 168 LINQHTLIFDGSTNPAHPKHIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEI 227
Query: 255 ---NGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLII 311
N ++P L ++L EL KNAMRAT+ESH ++ +P + + +A + DL I
Sbjct: 228 NAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESH-ESSLILPPIKVMVALGEEDLSI 286
Query: 312 RISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFG 350
++SDRGGG+ + ++R+ Y ++TA +PL G
Sbjct: 287 KMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAG 325
>gi|4505689 pyruvate dehydrogenase kinase 1 [Homo sapiens]
Length = 436
Score = 124 bits (310), Expect = 2e-28
Identities = 91/283 (32%), Positives = 149/283 (52%), Gaps = 25/283 (8%)
Query: 90 SARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEA 149
S +L+QELPVR+A+ +K LP + P++ V YI++ Q+L DF + +A
Sbjct: 75 SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKA 134
Query: 150 QY--CQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKL----VRYFLDKTLTSRLGIRML 203
Y V ++ + H DV+ +A+G+ E ++ + + V+YFLD+ SR+ IRML
Sbjct: 135 IYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRML 194
Query: 204 ATHHLALHEDKPD-------FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRING 256
H L K +G I + ++I+ + ARRLC+ Y N+P + +
Sbjct: 195 LNQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELE- 253
Query: 257 HVAARFP-------FIPMPLDYILPELLKNAMRATMESHLDTPYNVP-DVVITIANNDVD 308
+ A+ P ++P L +++ EL KNAMRATME H + P V +T+ N D
Sbjct: 254 ELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNED-- 311
Query: 309 LIIRISDRGGGIAHKDLDRVMDYHFTTA-EASTQDPRISPLFG 350
L +++SDRGGG+ + +DR+ +Y ++TA + R PL G
Sbjct: 312 LTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAG 354
>gi|4505693 pyruvate dehydrogenase kinase 4 [Homo sapiens]
Length = 411
Score = 119 bits (298), Expect = 4e-27
Identities = 83/279 (29%), Positives = 143/279 (51%), Gaps = 20/279 (7%)
Query: 90 SARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIK--DQAD 147
S +L+QELPVR+A+ +K LP + ++ V YI++ L +F DQ
Sbjct: 53 SFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKA 112
Query: 148 EAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKL----VRYFLDKTLTSRLGIRML 203
+ + + ++ + H +VV +A+G+ E + + + ++YFLD+ +R+ RML
Sbjct: 113 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRML 172
Query: 204 ATHHLALHEDK----PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA 259
H+ + D P +G I +++ + +R LC+ Y ++P +++ V
Sbjct: 173 MNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLT-QVN 231
Query: 260 ARFP-------FIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIR 312
+FP ++P L ++L EL KNAMRAT+E + P P VI + + DL I+
Sbjct: 232 GKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKE-DLTIK 290
Query: 313 ISDRGGGIAHKDLDRVMDYHFTTAEASTQD-PRISPLFG 350
ISDRGGG+ + +DR+ Y ++TA D R +PL G
Sbjct: 291 ISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAG 329
>gi|215422338 pyruvate dehydrogenase kinase 3 isoform 1 [Homo
sapiens]
Length = 415
Score = 115 bits (288), Expect = 6e-26
Identities = 79/279 (28%), Positives = 144/279 (51%), Gaps = 18/279 (6%)
Query: 90 SARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEA 149
S +L++ELPVR+A+ ++ LP + P++ V Y+++F +L ++ + +
Sbjct: 45 SYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQV 104
Query: 150 --QYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLV----RYFLDKTLTSRLGIRML 203
+ Q++ ++ + H DVV +A+G+ E ++ + + +YFLD+ T+R+ RML
Sbjct: 105 LDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRML 164
Query: 204 ATHHLAL-----HEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV 258
H L + P +G I + +++ + A+ LCE Y AP + +
Sbjct: 165 INQHTLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFN 224
Query: 259 AA------RFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIR 312
A + ++P L ++L EL KN+MRAT+E + D P V + DL I+
Sbjct: 225 AKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIK 284
Query: 313 ISDRGGGIAHKDLDRVMDYHFTTAEASTQDP-RISPLFG 350
ISD GGG+ + +DR+ +Y ++TA + +P R +PL G
Sbjct: 285 ISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAG 323
>gi|4885545 pyruvate dehydrogenase kinase 3 isoform 2 [Homo sapiens]
Length = 406
Score = 115 bits (288), Expect = 6e-26
Identities = 79/279 (28%), Positives = 144/279 (51%), Gaps = 18/279 (6%)
Query: 90 SARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEA 149
S +L++ELPVR+A+ ++ LP + P++ V Y+++F +L ++ + +
Sbjct: 45 SYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQV 104
Query: 150 --QYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLV----RYFLDKTLTSRLGIRML 203
+ Q++ ++ + H DVV +A+G+ E ++ + + +YFLD+ T+R+ RML
Sbjct: 105 LDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRML 164
Query: 204 ATHHLAL-----HEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV 258
H L + P +G I + +++ + A+ LCE Y AP + +
Sbjct: 165 INQHTLLFGGDTNPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFN 224
Query: 259 AA------RFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIR 312
A + ++P L ++L EL KN+MRAT+E + D P V + DL I+
Sbjct: 225 AKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIK 284
Query: 313 ISDRGGGIAHKDLDRVMDYHFTTAEASTQDP-RISPLFG 350
ISD GGG+ + +DR+ +Y ++TA + +P R +PL G
Sbjct: 285 ISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAG 323
>gi|169165066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 32.7 bits (73), Expect = 0.53
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 19 PLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAIDAAAEKPSVRLTPTMMLYA 78
P G A R R HV E VTS + QSA PS R+ P + L+A
Sbjct: 41 PTAGATSAARCRPR-----RHVAARSELRHFVTSHHRQSACSFRFLAPS-RIPPRLGLFA 94
Query: 79 GRSQDGSHL 87
GR + G H+
Sbjct: 95 GRGEAGCHV 103
>gi|169165483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 32.3 bits (72), Expect = 0.69
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 19 PLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAIDAAAEKPSVRLTPTMMLYA 78
P G A R R HV E VTS + QSA PS R+ P + L+A
Sbjct: 41 PTAGATSAARCRPR-----RHVAARSELRHFVTSHHRQSACSFRFLAPS-RIPPRLGLFA 94
Query: 79 GRSQDGSHL 87
GR + G H+
Sbjct: 95 GRGEAGYHV 103
>gi|169165882 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 32.3 bits (72), Expect = 0.69
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 19 PLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAIDAAAEKPSVRLTPTMMLYA 78
P G A R R HV E VTS + QSA PS R+ P + L+A
Sbjct: 41 PTAGATSAARCRPR-----RHVAARSELRHFVTSHHRQSACSFRFLAPS-RIPPRLGLFA 94
Query: 79 GRSQDGSHL 87
GR + G H+
Sbjct: 95 GRGEAGYHV 103
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.0 bits (71), Expect = 0.90
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 8 RSGPGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAIDAAAEKPS 67
R+ P GGLP PL GPAL R S + +R S + S + + AA+ +P+
Sbjct: 791 RTSPYGGLPAAPLAGPALPARRLSRA---------SRPLSASQPSLPHGAPGPAASTRPA 841
Query: 68 VRLTPTM 74
TP +
Sbjct: 842 SSSTPRL 848
>gi|4505941 DNA directed RNA polymerase II polypeptide B [Homo
sapiens]
Length = 1174
Score = 31.6 bits (70), Expect = 1.2
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 31/197 (15%)
Query: 11 PGGGLPLRPLLGPALALRARSTSATDTHHVEMARERSKTVTSFYNQSAIDAAAEKPSVRL 70
PGG + G L A+ AT+T +V A++ SK + +S ++ ++ +P+ +
Sbjct: 181 PGGYFIIN---GSEKVLIAQEKMATNTVYV-FAKKDSKYAYTGECRSCLENSS-RPTSTI 235
Query: 71 TPTMMLYAG----RSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVH 126
+M+ G +S G ++ + Y++QE+P+ I R GF + + H+
Sbjct: 236 WVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGF------VSDRDILEHI- 288
Query: 127 ELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLV 186
I F+ +K DEA Q + V L G R ++ + EK +
Sbjct: 289 ---IYDFEDPEMMEMVKPSLDEAFVIQ---------EQNVALNFIGSRGAKPGVTKEKRI 336
Query: 187 RY---FLDKTLTSRLGI 200
+Y L K + +G+
Sbjct: 337 KYAKEVLQKEMLPHVGV 353
>gi|18921093 transient receptor potential cation channel, subfamily
M, member 6 [Homo sapiens]
Length = 2022
Score = 30.8 bits (68), Expect = 2.0
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 28 RARSTSATDTHHVEMARERSKTVTSFYNQSAID--AAAEKPSVRLTPTMMLYAGRSQDGS 85
RA + A ++H V+ A E K + + Q A+D A K + R+ T++ Y R+ S
Sbjct: 646 RAMAHEAKESHMVDDASEELKNYSKQFGQLALDLLEKAFKQNERMAMTLLTYELRNWSNS 705
Query: 86 HLLKSA 91
LK A
Sbjct: 706 TCLKLA 711
>gi|148596957 myosin binding protein C, cardiac [Homo sapiens]
Length = 1274
Score = 30.4 bits (67), Expect = 2.6
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 257 HVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRIS 314
+++A+ F+ + +D++ + + HLD P +PD ++ +A N + L + IS
Sbjct: 624 NLSAKLHFMEVKIDFV-------PRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS 674
>gi|66773086 SH3-binding kinase 1 [Homo sapiens]
Length = 424
Score = 28.9 bits (63), Expect = 7.6
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 10 GPGGGLPLRPLLGPALALRARSTSATD-THHVEMARERSK 48
GPG G+PL L AL R+ +A+D T H E+ RE K
Sbjct: 24 GPGAGVPL--LTEDMQALTLRTLAASDVTKHYELVRELGK 61
>gi|9506611 guanine nucleotide binding protein-like 3
(nucleolar)-like [Homo sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 7.6
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 25/108 (23%)
Query: 134 QKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKT 193
Q+L FP + D+A Y +E RK +E ++ LD
Sbjct: 107 QELNMFPQLDDEATRKAY---------------------YKEFRKVVEYSDVILEVLDAR 145
Query: 194 LTSRLGIRMLATHHLALHEDKPDFVGIICTRLS--PKKIIEKWVDFAR 239
LG R L + ++ ++ PK+++EKW+D+ R
Sbjct: 146 --DPLGCRCFQMEEAVLRAQGNKKLVLVLNKIDLVPKEVVEKWLDYLR 191
>gi|148922920 DENN/MADD domain containing 4B [Homo sapiens]
Length = 1496
Score = 28.9 bits (63), Expect = 7.6
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Query: 190 LDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYG-- 247
L L L + +L H L +H +PD + +C L W LC
Sbjct: 405 LGPELAITLLLAVLTEHKLLVHSLRPDLLTSVCEALVSMIFPLHWQCPYIPLCPLVLADV 464
Query: 248 -NAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVP 296
+AP I G ++ F P D I +L N + T E L +P +P
Sbjct: 465 LSAPVPFIVGIHSSYFDLHDPPADVICVDLDTNTLFQTEEKKLLSPRTLP 514
>gi|169169855 PREDICTED: similar to hCG34808 [Homo sapiens]
Length = 483
Score = 28.5 bits (62), Expect = 9.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 297 DVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEAST 340
D+ + + NND+ L I++ IAH+D D+++ AE +T
Sbjct: 55 DIKVQVKNNDLGLQATINNEANWIAHQD-----DFNWLLAELNT 93
>gi|169168879 PREDICTED: similar to hCG34808 [Homo sapiens]
Length = 483
Score = 28.5 bits (62), Expect = 9.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 297 DVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEAST 340
D+ + + NND+ L I++ IAH+D D+++ AE +T
Sbjct: 55 DIKVQVKNNDLGLQATINNEANWIAHQD-----DFNWLLAELNT 93
>gi|169169326 PREDICTED: similar to hCG34808 [Homo sapiens]
Length = 483
Score = 28.5 bits (62), Expect = 9.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 297 DVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEAST 340
D+ + + NND+ L I++ IAH+D D+++ AE +T
Sbjct: 55 DIKVQVKNNDLGLQATINNEANWIAHQD-----DFNWLLAELNT 93
>gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
Length = 385
Score = 28.5 bits (62), Expect = 9.9
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 158 LLDDHKDVVT--LLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKP 215
+LD H V+ L E ++ R + ++RY +TL + +G+ L L ED P
Sbjct: 131 VLDAHFLVLASDLGIEKAKQLRSDLSSFDMLRYV--ETLLTHMGVNPLEAEELIRDEDSP 188
Query: 216 DFVGII 221
DF I+
Sbjct: 189 DFEFIV 194
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,928,850
Number of Sequences: 37866
Number of extensions: 594469
Number of successful extensions: 1432
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 23
length of query: 365
length of database: 18,247,518
effective HSP length: 104
effective length of query: 261
effective length of database: 14,309,454
effective search space: 3734767494
effective search space used: 3734767494
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.